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This does not\u000aeffect the default ADG1 closure.\u000a\u000aThe results in GrADS output files from the this revision are an exact match to\u000athe results in GrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7899 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b74c29c8fdd46473694efb1b2c91a66bd22a85c2\u000a", "date" : "2015-09-18 16:29:31 +0000", "id" : "0f34241b7bbf1ccf0805b6357bea04573a51d5c1", "msg" : "I updated pdf_closure_module.F90 by integrating changes I made in the", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "ab2e38486b0a1adf323e8b58922473771113f37a", "timestamp" : 1446161772000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:36:\u000a\u000aI meant to apply clubb:r7916 to the trunk.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7917 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4d6ddb360ce0a8fdd50b24bc2d19e0522f2c8bf8\u000a", "date" : "2015-10-29 23:36:12 +0000", "id" : "ab2e38486b0a1adf323e8b58922473771113f37a", "msg" : "For cam:ticket:36:", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "e917230571da0d9992cebe933575a3a0f058bc41", "timestamp" : 1446496362000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:36#comment:132, I removed `gr` from the use statement in `setup_grid_heights_api`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7918 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c625a4f22f57a4ae514f60a2aa8769a678a855c3\u000a", "date" : "2015-11-02 20:32:42 +0000", "id" : "e917230571da0d9992cebe933575a3a0f058bc41", "msg" : "For cam:ticket:36#comment:132, I removed `gr` from the use statement in `setup_grid_heights_api`.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "endian.F90", "parameters_model.F90" ], "commitId" : "0f06bb5311bde1161de7347d363d3a57d551faf1", "timestamp" : 1446868880000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:773, I fixed some unsoundness in our code regarding kinds, specifically in `parameters_model.F90` and `endian.F90`.\u000a\u000aGrADS output is bin-diff identical for all priority cases!\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7920 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 64a44bab443b257dc08482146a99a9f3b701a694\u000a", "date" : "2015-11-07 04:01:20 +0000", "id" : "0f06bb5311bde1161de7347d363d3a57d551faf1", "msg" : "For clubb:ticket:773, I fixed some unsoundness in our code regarding kinds, specifically in `parameters_model.F90` and `endian.F90`.", "paths" : [ { "editType" : "edit", "file" : "parameters_model.F90" }, { "editType" : "edit", "file" : "endian.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "e6bacda8d9b14bf0886c9c840ae2a9892a46188e", "timestamp" : 1448063758000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:41, the change in clubb:r7921 should be applied to the trunk as well.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7931 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a44255272b0264ffa148779ae06623ea74a061d3\u000a", "date" : "2015-11-20 23:55:58 +0000", "id" : "e6bacda8d9b14bf0886c9c840ae2a9892a46188e", "msg" : "For cam:ticket:41, the change in clubb:r7921 should be applied to the trunk as well.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "code_timer_module.F90" ], "commitId" : "e48ac26999cd9b7c4cd6df95028cf842693bbee7", "timestamp" : 1448328589000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:775:\u000a\u000aI dug up some old timing code from an obsolete CLUBB branch and found that it gives accurate results. Therefore, I am committing it to the trunk of CLUBB, inside the `CLUBB_core` directory. It is not used right now; it is simply designed to be a utility for code analysis.\u000a\u000aI cleaned up the code and added comments to make it suitable for the \"official\" CLUBB.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7934 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 10dcb3e8aaf7b5d36530bcbbb34e3787686f6403\u000a", "date" : "2015-11-24 01:29:49 +0000", "id" : "e48ac26999cd9b7c4cd6df95028cf842693bbee7", "msg" : "For clubb:ticket:775:", "paths" : [ { "editType" : "add", "file" : "code_timer_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "code_timer_module.F90" ], "commitId" : "de48143312d64ba3c84d8363ed7c164ec1edb73d", "timestamp" : 1448654722000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:775:\u000a\u000aI found a better (more precise) way to time code using `cpu_time`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7939 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ba495771c41d466065d79323fcb3e2065ea870e1\u000a", "date" : "2015-11-27 20:05:22 +0000", "id" : "de48143312d64ba3c84d8363ed7c164ec1edb73d", "msg" : "For clubb:ticket:775:", "paths" : [ { "editType" : "edit", "file" : "code_timer_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "code_timer_module.F90" ], "commitId" : "dd1186e7c5f4efe426972dc7634d8549de4414b4", "timestamp" : 1448654880000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Misc. code cleanup\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7940 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: d06b87ca91e3cbb735187dc2534e6a736e46f557\u000a", "date" : "2015-11-27 20:08:00 +0000", "id" : "dd1186e7c5f4efe426972dc7634d8549de4414b4", "msg" : "Misc. code cleanup", "paths" : [ { "editType" : "edit", "file" : "code_timer_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "precipitation_fraction.F90" ], "commitId" : "6915abd02fc590a68cf65e0b1f078fb9044461e5", "timestamp" : 1451599338000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating default CLUBB to use the same hydrometeor PDF parameters that are\u000aused in the Brian_special_input_fields_r7465 branch as well as in the paper on\u000aHydrometeor PDF shapes.\u000a\u000aThere are small changes to all cases that use analytic microphysics or SILHS.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7963 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 92187f595acfabf21a05e04d24a46688c868e428\u000a", "date" : "2015-12-31 22:02:18 +0000", "id" : "6915abd02fc590a68cf65e0b1f078fb9044461e5", "msg" : "I am updating default CLUBB to use the same hydrometeor PDF parameters that are", "paths" : [ { "editType" : "edit", "file" : "precipitation_fraction.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "b52d3abbdcfaf6908711a08b85a1c64097ceac75", "timestamp" : 1454030468000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:50:\u000a\u000aI added some fool-proofing to the code that stops the run with an error if the user sets `l_Lscale_plume_centered = .true.` and `l_avg_Lscale = .false.`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7972 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f11ede285a96bf2c04bdd7471bc0f7359b194a80\u000a", "date" : "2016-01-29 01:21:08 +0000", "id" : "b52d3abbdcfaf6908711a08b85a1c64097ceac75", "msg" : "For cam:ticket:50:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90" ], "commitId" : "c4366bf950382ebbc45905a6a961de1df29c3d7c", "timestamp" : 1455745962000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:52:\u000a\u000aI moved `l_stability_correct_tau_zm` to `model_flags.F90`, and made it a variable instead of a compile-time constant. This should be the only change we need to make to CLUBB to do away with the branch.\u000a\u000aCLUBB standalone output is bin-diff identical for a fine selection of CLUBB cases.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7978 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 25a8690cba226668f8eb62e75b86b6a43782a8c2\u000a", "date" : "2016-02-17 21:52:42 +0000", "id" : "c4366bf950382ebbc45905a6a961de1df29c3d7c", "msg" : "For cam:ticket:52:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "afd352985083952f77c4cbcfc616f482aa434671", "timestamp" : 1455747785000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:52, I added some parameter indices to the API.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7980 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6e6fa65c78c57c47d118dc5825f370b620bb56cd\u000a", "date" : "2016-02-17 22:23:05 +0000", "id" : "afd352985083952f77c4cbcfc616f482aa434671", "msg" : "For cam:ticket:52, I added some parameter indices to the API.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "cd647d184035d2add22118d108274fe8e330b12c", "timestamp" : 1455748595000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "I forgot a parameter!\u000a\u000acam:ticket:52.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7982 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 2f2dc8e11b099c5aea3986de77b291e945720ec7\u000a", "date" : "2016-02-17 22:36:35 +0000", "id" : "cd647d184035d2add22118d108274fe8e330b12c", "msg" : "I forgot a parameter!", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "stats_variables.F90" ], "commitId" : "61f401a444b13eb465b007134bbfe7ed44706035", "timestamp" : 1456103321000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:753:\u000a\u000aI added statistical output for the SILHS estimates of `rtp2_mc`, `thlp2_mc`, `wprtp_mc`, `wpthlp_mc`, and `rtpthlp_mc`.\u000a\u000aOutput ought to be bin-diff identical for all cases, aside from the new outputs (which are not output by default).\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7987 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a8e9a4db95398ec9024a1e17f0763969a102fc36\u000a", "date" : "2016-02-22 01:08:41 +0000", "id" : "61f401a444b13eb465b007134bbfe7ed44706035", "msg" : "For clubb:ticket:753:", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "interpolation.F90", "model_flags.F90" ], "commitId" : "5de08c8becc16a5b83c3bf0a6908bcaeb6cdecd6", "timestamp" : 1456190792000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:782:\u000a\u000aI merged in NCAR's changes to `advance_clubb_core_module.F90` and `interpolation.F90`. This is probably at least half the battle.\u000a\u000aI added some flags to `model_flags.F90`. They are set to the values that preserve answers in CLUBB standalone. Output is bin-diff identical for a comprehensive selection of test cases.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7989 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 09326d9dfe1aaff864a12cd1c7c0773002d912f4\u000a", "date" : "2016-02-23 01:26:32 +0000", "id" : "5de08c8becc16a5b83c3bf0a6908bcaeb6cdecd6", "msg" : "For clubb:ticket:782:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "interpolation.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "1e6552e61c15a0c39c0a556625694c2dc50d00c6", "timestamp" : 1456190930000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "I forgot a flag.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7990 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 36100d67534c0bce1c278b7bd6da1e9e8b3931a7\u000a", "date" : "2016-02-23 01:28:50 +0000", "id" : "1e6552e61c15a0c39c0a556625694c2dc50d00c6", "msg" : "I forgot a flag.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "saturation.F90", "model_flags.F90", "clubb_api_module.F90", "mt95.f90", "csr_matrix_module.F90", "stats_variables.F90", "pdf_parameter_module.F90", "parameters_tunable.F90", "sponge_layer_damping.F90", "parameters_model.F90", "gmres_cache.F90", "variables_prognostic_module.F90" ], "commitId" : "5d190297215985f31583c4a206fc173b56bc52e8", "timestamp" : 1456259763000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:782:\u000a\u000aI completed merging in NCAR's changes. The changes include a LOT of missing `!$omp threadprivate` directives. I wonder how they manage to find these. Maybe they have a script?\u000a\u000aI also eliminated all CAM preprocessors from `parameters_tunable.F90`!!\u000a\u000aOutput is bin-diff identical for a selection of cases.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7991 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 7ac98ef43fe88b5c9936db4becc53e2579b172a7\u000a", "date" : "2016-02-23 20:36:03 +0000", "id" : "5d190297215985f31583c4a206fc173b56bc52e8", "msg" : "For clubb:ticket:782:", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "variables_prognostic_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "mt95.f90" }, { "editType" : "edit", "file" : "parameters_model.F90" }, { "editType" : "edit", "file" : "gmres_cache.F90" }, { "editType" : "edit", "file" : "saturation.F90" }, { "editType" : "edit", "file" : "sponge_layer_damping.F90" }, { "editType" : "edit", "file" : "pdf_parameter_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "csr_matrix_module.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "68c38299b84040772fd03108779fc63f5c0e3485", "timestamp" : 1456268330000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:55, I added some parameters to CLUBB's API.\u000a\u000aOutput is highly unlikely to change in any configuration.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7992 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 328e2a42184ddd72b4d584391edef45de2285526\u000a", "date" : "2016-02-23 22:58:50 +0000", "id" : "68c38299b84040772fd03108779fc63f5c0e3485", "msg" : "For cam:ticket:55, I added some parameters to CLUBB's API.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "26ad189a39a78c215af30e67ac15fd2369ed9091", "timestamp" : 1456269331000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:55:\u000a\u000aApprarently, I had some indices declared twice. Also apparently, `gfortran` accepts this but Intel doesn't.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@7993 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a47cfe4bd86442b727ba24412b5a52f48e798945\u000a", "date" : "2016-02-23 23:15:31 +0000", "id" : "26ad189a39a78c215af30e67ac15fd2369ed9091", "msg" : "For cam:ticket:55:", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_clubb_utilities.F90", "clubb_api_module.F90", "corr_varnce_module.F90" ], "commitId" : "56f87be8850c283ce00a8d858ec00d2f6b4af11c", "timestamp" : 1457044956000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "I cleaned up some warnings from the Mac compiler. (build:14977)\u000a\u000aOutput ought to be bin-diff identical for all cases.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8001 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9b7d4d071dbdd3704e5fe09b274aa82de9b146fd\u000a", "date" : "2016-03-03 22:42:36 +0000", "id" : "56f87be8850c283ce00a8d858ec00d2f6b4af11c", "msg" : "I cleaned up some warnings from the Mac compiler. (build:14977)", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "corr_varnce_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "parameter_indices.F90" ], "commitId" : "8025ab1342a7a1b3e085b1783856426c1a92a89e", "timestamp" : 1457567876000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:785, I renamed `initvars` to `clubb_params_nl`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8010 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: bd3995e594614e659c8491539a29167fbd4cb318\u000a", "date" : "2016-03-09 23:57:56 +0000", "id" : "8025ab1342a7a1b3e085b1783856426c1a92a89e", "msg" : "For clubb:ticket:785, I renamed `initvars` to `clubb_params_nl`.", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "1889cc7cdabe616805708d52c269b35192b3ec77", "timestamp" : 1457568472000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:785:\u000a\u000aI renamed `silhs_flags_nl` to `configurable_silhs_flags_nl` and `configurable_model_flags` (only the namelist) to `configurable_clubb_flags_nl`.\u000a\u000aThe output from this revision is bin-for-diff identical to the output from clubb:r8007.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8011 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 3e443cf08251c8b4b090c622ad44c54933323ea3\u000a", "date" : "2016-03-10 00:07:52 +0000", "id" : "1889cc7cdabe616805708d52c269b35192b3ec77", "msg" : "For clubb:ticket:785:", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_grads.F90", "input_reader.F90", "stats_type.F90", "stat_file_module.F90", "stats_type_utilities.F90", "csr_matrix_module.F90", "stats_clubb_utilities.F90", "grid_class.F90", "sponge_layer_damping.F90", "gmres_cache.F90" ], "commitId" : "c44ad4365657039db80b07ad3e2240211c9c8064", "timestamp" : 1457744058000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:779:\u000a\u000aI replaced `pointer` with `allocatable` in (almost) the entirety of `CLUBB_core`.\u000a\u000aAll compilers in `compiler_tests.bash` can compile this version of CLUBB and none emit any warnings related to these changes. Further, with `gfortran`, output is bin-diff identical for all cases.\u000a\u000aCLUBB has officially joined the 21st century!\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8014 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b0a141cc435acc5e0343523eb79307d33da7a711\u000a", "date" : "2016-03-12 00:54:18 +0000", "id" : "c44ad4365657039db80b07ad3e2240211c9c8064", "msg" : "For clubb:ticket:779:", "paths" : [ { "editType" : "edit", "file" : "stats_type.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "output_grads.F90" }, { "editType" : "edit", "file" : "stat_file_module.F90" }, { "editType" : "edit", "file" : "stats_type_utilities.F90" }, { "editType" : "edit", "file" : "input_reader.F90" }, { "editType" : "edit", "file" : "sponge_layer_damping.F90" }, { "editType" : "edit", "file" : "csr_matrix_module.F90" }, { "editType" : "edit", "file" : "gmres_cache.F90" }, { "editType" : "edit", "file" : "grid_class.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_clubb_utilities.F90", "variables_diagnostic_module.F90", "variables_prognostic_module.F90" ], "commitId" : "cac8541445e3db6df096fc04655670471a646ae9", "timestamp" : 1458599317000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:786:\u000a\u000aI am attempting to fix two related problems in CLUBB:\u000a1. We need to make sure CLUBB is completely cleaned up before exiting `run_clubb`, otherwise we have memory leaks and potential errors.\u000a2. We should make sure variables are allocated before we attempt to deallocate them.\u000a\u000aFor (1), I refactored CLUBB's cleanup code into a single subroutine and am calling it in some places that a \"return\" statement appears. For (2), I attempted to add some appropriate conditions to look for before deallocating variables.\u000a\u000aOutput ought to be bin-diff identical.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8020 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 224a4ecb0e3aebba959a50ffb56f2975de192aff\u000a", "date" : "2016-03-21 22:28:37 +0000", "id" : "cac8541445e3db6df096fc04655670471a646ae9", "msg" : "For clubb:ticket:786:", "paths" : [ { "editType" : "edit", "file" : "variables_diagnostic_module.F90" }, { "editType" : "edit", "file" : "variables_prognostic_module.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_clubb_utilities.F90" ], "commitId" : "2be0615c817b980139e9df1bbc39b5bd91285cfb", "timestamp" : 1458850471000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:786:\u000a\u000aI fixed two tuner related problems.\u000a\u000aI made the SILHS parameters namelist optional, so that a warning message is simply printed if the namelist is not found. I'm not particularly fond of this solution, but the difficult alternative is to track down the places in the tuner where the SILHS namelist needs to be placed. Maybe some other day.\u000a\u000aI also deallocated a variable in SILHS that wasn't deallocated before.\u000a\u000aOutput ought not to change.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8023 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ccef9fe7bcd6531d3a6903fbe2c6a8db763830ea\u000a", "date" : "2016-03-24 20:14:31 +0000", "id" : "2be0615c817b980139e9df1bbc39b5bd91285cfb", "msg" : "For clubb:ticket:786:", "paths" : [ { "editType" : "edit", "file" : "stats_clubb_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "76ffc1e665c4e26d1668c2efc9df9cdb5bbc142f", "timestamp" : 1459894240000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:782, I added all CLUBB's parameter indices to the API.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8029 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 129197ab3782d5708e97fa61b72e3e1d6bc29cdd\u000a", "date" : "2016-04-05 22:10:40 +0000", "id" : "76ffc1e665c4e26d1668c2efc9df9cdb5bbc142f", "msg" : "For clubb:ticket:782, I added all CLUBB's parameter indices to the API.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "3a6793ec01bbe473ddf6d0583c662432bbbc4507", "timestamp" : 1459899281000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "helpful note\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8030 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f1a1a51bab997a8957a9878542c03b55d2eae5ac\u000a", "date" : "2016-04-05 23:34:41 +0000", "id" : "3a6793ec01bbe473ddf6d0583c662432bbbc4507", "msg" : "helpful note", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "4d2d0eb0e397482dacaa804e257fdad814b540fc", "timestamp" : 1459899376000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "more helpful note\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8031 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 24e0650cb14be00b26b35e9314c0886b249a6099\u000a", "date" : "2016-04-05 23:36:16 +0000", "id" : "4d2d0eb0e397482dacaa804e257fdad814b540fc", "msg" : "more helpful note", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "ee33663d3cd6174fe4feefaec16f7a837f227bcb", "timestamp" : 1459899640000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "most helpful note\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8032 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: fa7f961b7b520e654a30096415d1ba60fd4f1807\u000a", "date" : "2016-04-05 23:40:40 +0000", "id" : "ee33663d3cd6174fe4feefaec16f7a837f227bcb", "msg" : "most helpful note", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "stats_zt_module.F90" ], "commitId" : "72529d6d77d14863829ec0b2dd173e88561e8ac7", "timestamp" : 1460749629000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:56:\u000a\u000aWhile looking through plots, I noticed that for some reason, CLUBB output files list `cloud_frac` as having units of \"count\", which in fact it is a fraction between 0 and 1. I have changed the units to be \"-\", as is done elsewhere.\u000a\u000aNote that this commit is BIT_CHANGING, but only because of the metadata change. Numerical values of all variables should be identical.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8039 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 386dd79390ff0720658e567be846b45f1267b596\u000a", "date" : "2016-04-15 19:47:09 +0000", "id" : "72529d6d77d14863829ec0b2dd173e88561e8ac7", "msg" : "For cam:ticket:56:", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "c6500cfe559a78be80cba8e53e2fdd19ca853f3b", "timestamp" : 1461627613000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "While working on cam:ticket:59, I noticed that `tau_N2_zm` is computed twice. I removed one computation.\u000a\u000aThis shouldn't change answers.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8051 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 56c350b1b4e1bd8cbc7337c7f3d3b5d5b6a7f7b3\u000a", "date" : "2016-04-25 23:40:13 +0000", "id" : "c6500cfe559a78be80cba8e53e2fdd19ca853f3b", "msg" : "While working on cam:ticket:59, I noticed that `tau_N2_zm` is computed twice. I removed one computation.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "cb412fb54cc283d26552c72d98c21a225df26cc8", "timestamp" : 1461629167000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Dat crazy indentation, though...\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8052 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: bbb1955eaad91f06f5fea34e40eb6ea168b7d959\u000a", "date" : "2016-04-26 00:06:07 +0000", "id" : "cb412fb54cc283d26552c72d98c21a225df26cc8", "msg" : "Dat crazy indentation, though...", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "fb63f2634b6063fef6e6aaa7cd11a2c017516501", "timestamp" : 1461698001000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59, I refactored the calculation of `brunt_vaisala_freq` into a subroutine, and renamed it `brunt_vaisala_freq_sqd`.\u000a\u000aOutput is bin-diff identical for a test case.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8053 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e6131eda3cc0829d2900c24ffeac3e1cfdf9196f\u000a", "date" : "2016-04-26 19:13:21 +0000", "id" : "fb63f2634b6063fef6e6aaa7cd11a2c017516501", "msg" : "For cam:ticket:59, I refactored the calculation of `brunt_vaisala_freq` into a subroutine, and renamed it `brunt_vaisala_freq_sqd`.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "42e5348649c5fe2849b9f3f4f75a64cee941e842", "timestamp" : 1461713891000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI added an option to compute `C7_Skw_fnc` based on the Richardson number. This change is wrapped in a flag, `l_use_C7_Richardson`, which is false by default.\u000a\u000aOutput is bin-diff identical in the default configuration.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8056 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f545aa262b505691bcbc7a6a0dff5a6561bdb64d\u000a", "date" : "2016-04-26 23:38:11 +0000", "id" : "42e5348649c5fe2849b9f3f4f75a64cee941e842", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "model_flags.F90" ], "commitId" : "185167896321573e6a27bb1994ac28aa75203fed", "timestamp" : 1461880889000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI am incorporating Vince's changes into the trunk.\u000a\u000aThis commit introduces a new flag, `l_damp_wp2_using_em`, which, if true, will use a dissipation formula based on `em` in the `wp2` equation.\u000a\u000aThe flag is false by default, and output is bin-diff identical in the default configuration.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8066 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 39fb65cf92cbd275653e062e6e5603abc28dd1bd\u000a", "date" : "2016-04-28 22:01:29 +0000", "id" : "185167896321573e6a27bb1994ac28aa75203fed", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "29d9ce8ac3458638923b4ac461a5a569774cd604", "timestamp" : 1461883559000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI added a check that ensures `C1=C14` and `l_stability_correct_tau_zm=F` if `l_damp_wp2_using_em=T`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8067 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 90a2faf25065f00bda5220403e7cdb654c114f50\u000a", "date" : "2016-04-28 22:45:59 +0000", "id" : "29d9ce8ac3458638923b4ac461a5a569774cd604", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "stats_zm_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "c32284c78f7aa9070afc4f0b61bed73ccf7ccdf3", "timestamp" : 1461896081000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59, I added a new output for Richardson number.\u000a\u000aIt is not added to the default output file, so output is bin-diff identical in the default configuration.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8068 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: cad331d6bd01ccc55b8b797a5f502ed45477530f\u000a", "date" : "2016-04-29 02:14:41 +0000", "id" : "c32284c78f7aa9070afc4f0b61bed73ccf7ccdf3", "msg" : "For cam:ticket:59, I added a new output for Richardson number.", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "advance_xm_wpxp_module.F90", "advance_helper_module.F90" ], "commitId" : "9d61a8bf2a1f6989dec2ad8c2b9d5d4454b4bfe6", "timestamp" : 1461965345000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI am adding an option to use a different formulation of `brunt_vaisala_frequency_sqd` in saturated air. This formula comes from Durran and Klemp (1982).\u000a\u000aAs always, the change is wrapped in a flag, and output is bin-diff identical in the default configuration.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8069 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 41dcf2571aeebbf3725a54ad3c0da5e062769577\u000a", "date" : "2016-04-29 21:29:05 +0000", "id" : "9d61a8bf2a1f6989dec2ad8c2b9d5d4454b4bfe6", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "9e607955d0c529d4ef6b36f9378b6d08fa21137c", "timestamp" : 1461965528000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Per cam:ticket:59#comment:21, using `T_in_K_zm` in \"the formula\".\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8070 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 56b84fdb1a791cbe02cc4c810a8bac7f49c7704e\u000a", "date" : "2016-04-29 21:32:08 +0000", "id" : "9e607955d0c529d4ef6b36f9378b6d08fa21137c", "msg" : "Per cam:ticket:59#comment:21, using `T_in_K_zm` in \"the formula\".", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "7682bbc205b4cd2c20021752e41e29fc76a4a8d0", "timestamp" : 1461966004000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59.\u000a\u000aAlso, `rsat` should be `rsat_zm` where it appears in the formula, ''except'' when it appears inside of `ddzt()`. Right?\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8071 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 3f69d0d4521af585b55d8462f1eaa98e180189d6\u000a", "date" : "2016-04-29 21:40:04 +0000", "id" : "7682bbc205b4cd2c20021752e41e29fc76a4a8d0", "msg" : "For cam:ticket:59.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "stats_variables.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "f82218e2933997790453ec1d4f6990fdda8415e5", "timestamp" : 1462207493000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59 I renamed `Richardson_no` to `Richardson_num`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8072 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: fdb08f1446b21bf3ba54158aac38d49e4d5ef7bd\u000a", "date" : "2016-05-02 16:44:53 +0000", "id" : "f82218e2933997790453ec1d4f6990fdda8415e5", "msg" : "For cam:ticket:59 I renamed `Richardson_no` to `Richardson_num`.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "stats_variables.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "c74225d16f9673c358f062b6f1e77a2c7cbd0638", "timestamp" : 1462231736000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59, I added kludgy statistical output for `brunt_vaisala_freq_sqd`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8074 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8fc0610745db2bf6e686f9d315b46fc8395c1cb9\u000a", "date" : "2016-05-02 23:28:56 +0000", "id" : "c74225d16f9673c358f062b6f1e77a2c7cbd0638", "msg" : "For cam:ticket:59, I added kludgy statistical output for `brunt_vaisala_freq_sqd`.", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "604739065495ff559f032f191e99e9837e667106", "timestamp" : 1462569196000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI added functionality to vertically average Richardson number based on Lscale. The option is turned off by default, so output should be bin-diff identical by default.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8083 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6821e86becfff5f3144b4398a27ba261903f486d\u000a", "date" : "2016-05-06 21:13:16 +0000", "id" : "604739065495ff559f032f191e99e9837e667106", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "197f846d43da2f87e5f6f03a1862bd2ceeecc7cf", "timestamp" : 1462570298000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aOops.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8084 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e452ee71e4c3a0ec7bbb1dae710efe4b1209806f\u000a", "date" : "2016-05-06 21:31:38 +0000", "id" : "197f846d43da2f87e5f6f03a1862bd2ceeecc7cf", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "193b2356409331ff90c897b93d468ed501771a77", "timestamp" : 1462843057000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aWhile reading through the code, I found an important bug in the moist Brunt-Vaisala code. Inside a `where` statement, I had calls to functions that take in an entire profile as input, such as `zt2zm` and `ddzt`. But the arguments to these functions where themselves initialized in the `where` statement! Therefore, much of the input profiles to these functions were likely uninitialized. Not good.\u000a\u000aThis change affects only the case where `l_brunt_vaisala_freq_moist = T`, which is not the default.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8085 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8ca078a9223a3a07a90e115f1f1d3296ea196896\u000a", "date" : "2016-05-10 01:17:37 +0000", "id" : "193b2356409331ff90c897b93d468ed501771a77", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "c7d55c72919e58648dae4e5003586d2100876571", "timestamp" : 1463004560000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59.\u000a\u000aRefactoring: I renamed function `Richardson_num_vert_avg` to `Lscale_width_vert_avg` to make it clear it can be used for other variables.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8086 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f56b3f11144798216e670da4f77fcd1579428676\u000a", "date" : "2016-05-11 22:09:20 +0000", "id" : "c7d55c72919e58648dae4e5003586d2100876571", "msg" : "For cam:ticket:59.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "0522c9f194d6b51ad08844e40e84d5099e7820fc", "timestamp" : 1463018454000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI set `Richardson_num_max` to five, and enabled by default code that vertically averages `C7_Skw_fnc` over a distance of `Lscale_zm`, as this seems to be closer to what we want.\u000a\u000aThis only affects results when `l_use_C7_Richardson = T`, which is not the default.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8087 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 087970848c0e815d6b87a84d5d538e720ed6e95b\u000a", "date" : "2016-05-12 02:00:54 +0000", "id" : "0522c9f194d6b51ad08844e40e84d5099e7820fc", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "4f0028b1d246bd6d16b5435fc172ecb34a354fc9", "timestamp" : 1463018684000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Apparently, I didn't have to jump through the hoop of declaring a separate profile to use in the `max` statement.\u000a\u000aRef: cam:ticket:59.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8088 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: d3a45797366bc238c5b19441707cc0c9f7d99883\u000a", "date" : "2016-05-12 02:04:44 +0000", "id" : "4f0028b1d246bd6d16b5435fc172ecb34a354fc9", "msg" : "Apparently, I didn't have to jump through the hoop of declaring a separate profile to use in the `max` statement.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "33af548fec392e63dabb9e2adc048c7c70c9fb86", "timestamp" : 1463086723000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI am adding exciting support for density-weighted vertical averaging (using function `fill_holes`) in averaging `C7_Skw_fnc`.\u000a\u000aThis affects output if and only if `l_use_C7_Richardson = T`, which is not default. Changes are fairly minor.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8089 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e37640c3132cadc52f0385ba3c8c3c832bccdf28\u000a", "date" : "2016-05-12 20:58:43 +0000", "id" : "33af548fec392e63dabb9e2adc048c7c70c9fb86", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "d685dd943a6c479c2997e19bb4e8726eb947042b", "timestamp" : 1463089066000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aRefactoring: Virtual levels!!! I am refactoring the code to make use of \"virtual levels\". This lays the framework to allow below-ground levels to affect the vertical averaging.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8090 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a6bdc7a8634bcac9b9caf5beb7f47313d515a0c6\u000a", "date" : "2016-05-12 21:37:46 +0000", "id" : "d685dd943a6c479c2997e19bb4e8726eb947042b", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "c48216a85ed26f6c6f973e7e9bfad6ae6f6ff173", "timestamp" : 1463093570000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI have set up the `l_use_C7_Richardson = T` code to include \"virtual\" vertical levels below ground in the vertical averaging of `C7_Skw_fnc`.\u000a\u000aOutput shouldn't change in the default configuration.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8091 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 54d6826625f5e603cd3e348f3fd91c90a578ff83\u000a", "date" : "2016-05-12 22:52:50 +0000", "id" : "c48216a85ed26f6c6f973e7e9bfad6ae6f6ff173", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "advance_clubb_core_module.F90", "parameter_indices.F90", "clubb_api_module.F90", "advance_windm_edsclrm_module.F90" ], "commitId" : "0f756d77d387e7bbf34196f019648ffd85583460", "timestamp" : 1463518449000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:782:\u000a\u000aI merged NCAR's tag, !^/tags/ncar_tags/clubb_cK10_tags/clubb_cK10_n05_r8096, into the trunk. This commit mainly adds a new tuning parameter, `c_K10h`, which is related to `c_K10` but `c_K10h` is for thermodynamic levels. Keeping `c_K10 = c_K10h = 1.0` maintains current results.\u000a\u000aThis commit is BIT_CHANGING, but only because a new tuning parameter was added, and apparently we are in the habit of outputting all tunable parameters in our NetCDF files. Numerically, NetCDF results should be identical. GrADS results are bin-diff identical for all (priority) cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8099 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 06bb00ff2f9e355d4115f2d3b0023e628fec704a\u000a", "date" : "2016-05-17 20:54:09 +0000", "id" : "0f756d77d387e7bbf34196f019648ffd85583460", "msg" : "For clubb:ticket:782:", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "stats_zm_module.F90", "advance_clubb_core_module.F90", "model_flags.F90", "advance_xm_wpxp_module.F90", "advance_helper_module.F90" ], "commitId" : "fabce99c9f3c6239be758f17fa091f1615b44d17", "timestamp" : 1463527741000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI am bringing in the latest and greatest features from the `diag` branch back into the trunk. The changes are enhancements to the case where `l_use_C7_Richardson = T` (not default).\u000a\u000aOutput is bin-diff identical in the default configuration.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8106 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 71595a55488b9463768ec15182052bbe4c767470\u000a", "date" : "2016-05-17 23:29:01 +0000", "id" : "fabce99c9f3c6239be758f17fa091f1615b44d17", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90" ], "commitId" : "d47e9225511e6b87d16e1a95e6aaec700ef71fdd", "timestamp" : 1463590697000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI had to increase `nvarmax_zm` due to new statistics being added.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8108 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 50ad45cdc9d10b94c9245b6007e09262696c43c5\u000a", "date" : "2016-05-18 16:58:17 +0000", "id" : "d47e9225511e6b87d16e1a95e6aaec700ef71fdd", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "cc7ff036228d237f5777ed263151c838cd0a3d1b", "timestamp" : 1463604255000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI reintroduced the ability to use `turb_freq_sqd` in the denominator of `Richardson_num` as a option set to false. I suppose this is better than commented out code.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8109 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4de028682e1994f0206331aba28c9b3ac14c5ab7\u000a", "date" : "2016-05-18 20:44:15 +0000", "id" : "cc7ff036228d237f5777ed263151c838cd0a3d1b", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "2107752e392902007942d6fdf4b344f1f10bdf8e", "timestamp" : 1463605180000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI am introducing a new option (non-default) to vertically average clipped `Richardson_num`.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8110 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f5efc2c4006252b3d5f5278dab026c7f2a8ffdd6\u000a", "date" : "2016-05-18 20:59:40 +0000", "id" : "2107752e392902007942d6fdf4b344f1f10bdf8e", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "97c842511dae89f61397c68fe463edda9a62d84e", "timestamp" : 1463625758000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:782:\u000a\u000aThese changes augment clubb:r8099. I confined the declaration of `RHpostPDF` in a `CLUBB_CAM` preprocessor directive to resolve a compiler warning. I also added `c_K10h` to some error_*.in files for the tuner. This resolves the failure of the nightly FIRE tuner test last night.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8111 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a3e3d9ef33520631972c02276aac7cd4df1459b8\u000a", "date" : "2016-05-19 02:42:38 +0000", "id" : "97c842511dae89f61397c68fe463edda9a62d84e", "msg" : "For clubb:ticket:782:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "491b13f63db3f99e5095c89562ecf4065fc69a18", "timestamp" : 1463700393000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI am committing parameter changes to the `l_use_C7_Richardson = T` code:\u000a* `Richardson_num_max = 200`\u000a* Vertical averaging of `Richardson_num` is enabled.\u000a* `Richardson_num` below ground is `0.5 * Richardson_num_max`.\u000a\u000aOutput should be bin-diff identical in the default configuration.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8112 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c4131f9f29baedbd678035f8d8aadecb08b68358\u000a", "date" : "2016-05-19 23:26:33 +0000", "id" : "491b13f63db3f99e5095c89562ecf4065fc69a18", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "78b1837f3871084d821505278bbb3f493870d6ed", "timestamp" : 1464124838000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59, I fixed bugs in the `l_use_C7_Richardson=T` vertical averaging code:\u000a\u000a1. The averaging levels should be within 0.5*Lscale, not Lscale.\u000a2. The equation for the number of \"below ground\" levels was totally wrong. I must have been half asleep when I wrote that equation.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8113 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 0d38c52c98c6060f95ccb6e35be4b497ff8fff56\u000a", "date" : "2016-05-24 21:20:38 +0000", "id" : "78b1837f3871084d821505278bbb3f493870d6ed", "msg" : "For cam:ticket:59, I fixed bugs in the `l_use_C7_Richardson=T` vertical averaging code:", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "922aa61598b0b75ff0e72446efbc31737cd5b5e7", "timestamp" : 1464127537000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "I adjusted a comment.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8114 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: da6f1c25f65f4f89af732ac5081fe1ea932915c3\u000a", "date" : "2016-05-24 22:05:37 +0000", "id" : "922aa61598b0b75ff0e72446efbc31737cd5b5e7", "msg" : "I adjusted a comment.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "model_flags.F90" ], "commitId" : "0fceb83bc012d5304422b23d42dd3b5ab083a919", "timestamp" : 1464137943000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:788:\u000a\u000aI am adding support for \"pressure term 3\" (pr3) in wp3's equation set. `wp3_pr3` will be included in the equation only if `l_use_wp3_pr3 = T` (default false).\u000a\u000aThe magnitude of `wp3_pr3` is dependent on `C16_fnc`. Currently, `C16_fnc` is hardcoded to be 0.5. In the near future, `wp3_pr3` will instead be based on `Richardson_num`, analogously to `C7_Skw_fnc`.\u000a\u000aOutput is bin-diff identical in the default configuration.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8115 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 216c85147d343dad788bd34689f333e854ffb660\u000a", "date" : "2016-05-25 00:59:03 +0000", "id" : "0fceb83bc012d5304422b23d42dd3b5ab083a919", "msg" : "For clubb:ticket:788:", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90" ], "commitId" : "65085f8ad1cd4a0a49f60d764d36faa0d47d1869", "timestamp" : 1464201509000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aMinor correction to units: the Skw_fnc variables should have units of \"-\", not \"count\".\u000a\u000aOf course, this commit is BIT_CHANGING because units, which are written to the NetCDF files, have been changed.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8116 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e7d892a1ae271bf6e3c6f8a20ff0ca2046b2b215\u000a", "date" : "2016-05-25 18:38:29 +0000", "id" : "65085f8ad1cd4a0a49f60d764d36faa0d47d1869", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "stats_variables.F90", "stats_zt_module.F90" ], "commitId" : "f6f7a5aa8bc79938d9294f1d0d79c93f885daa48", "timestamp" : 1464315410000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:788:\u000a\u000aAfter a long battle, I finally got successful statistics outputting of the `wp3_pr3` term!!!\u000a\u000aTests run:\u000a1. Output is bin-diff if `l_use_wp3_pr3 = F` (default).\u000a2. Output is bin-diff if `l_use_wp3_pr3 = T` and `C16_fnc(:) = 0.0`.\u000a3. If `C16_fnc(:) = 1.0`, then the `wp3_pr3` term exactly opposes the sum of the `wp3_ta` and `wp3_tp` terms when overplotted. Furthermore, after adding `wp3_pr3` into the `wp3_residual` equation, `wp3_residual` is zero! (That is, the bu\u000adget balances.)\u000a\u000aThat code in `advance_wp2_wp3_module.F90` is pretty intricate, eh?\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8117 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 313f0faf6a0fc63ab241027943c8498096bbe599\u000a", "date" : "2016-05-27 02:16:50 +0000", "id" : "f6f7a5aa8bc79938d9294f1d0d79c93f885daa48", "msg" : "For clubb:ticket:788:", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90", "advance_helper_module.F90" ], "commitId" : "11fdf543bc3a7f58254d8fbe13b5153b70823f43", "timestamp" : 1464625455000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:788:\u000a\u000aRefactoring: I moved `compute_C7_Skw_fnc_Richardson` and `Lscale_width_vert_avg` to `advance_helper_module.F90`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8118 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 0811835821202839f23ac52b2703a7ef1fc95472\u000a", "date" : "2016-05-30 16:24:15 +0000", "id" : "11fdf543bc3a7f58254d8fbe13b5153b70823f43", "msg" : "For clubb:ticket:788:", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90", "advance_helper_module.F90" ], "commitId" : "206f04854099eb063ed1693d2920c0c7645630c0", "timestamp" : 1464628703000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:788:\u000a\u000aRefactoring: I renamed `compute_C7_Skw_fnc_Richardson` to `compute_Cx_fnc_Richardson`. I pulled out the computation of `Cx_fnc_Richardson` to `advance_clubb_core_module` and passed `Cx_fnc_Richardson` to `advance_xm_wpxp`, where it is used to set `C7_Skw_fnc`.\u000a\u000aOutput is bin-diff identical for some test cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8119 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e9d6955c8a6dff6139dbc4945304625a4477c0d1\u000a", "date" : "2016-05-30 17:18:23 +0000", "id" : "206f04854099eb063ed1693d2920c0c7645630c0", "msg" : "For clubb:ticket:788:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_clubb_core_module.F90" ], "commitId" : "4e1247dd422e18086b059476e7133b703d36ac81", "timestamp" : 1464629432000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:788:\u000a\u000aI am using `Cx_fnc_Richardson` to set `C16_fnc` in subroutine `advance_wp2_wp3`.\u000a\u000aThis should affect output if and only if `l_use_wp3_pr3 = T` (default `F`).\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8120 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 918f896b3a551678cf5c156adfd2c04000958a12\u000a", "date" : "2016-05-30 17:30:32 +0000", "id" : "4e1247dd422e18086b059476e7133b703d36ac81", "msg" : "For clubb:ticket:788:", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "43a1c71b99857c13815467fcdacd4d0cc18253f7", "timestamp" : 1464747298000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:788:\u000a\u000aDamage control: I am adding lines that clip `C7_Skw_fnc` (which should now be renamed to `Cx_fnc_Richardson` in this context) to be within the range [0,1]. Apparently, on at least Intel (see build:15667), roundoff error can leave `C7_Skw_fnc` slightly outside this range.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8129 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4675048a0d54c86064366ca667174c5a403d6462\u000a", "date" : "2016-06-01 02:14:58 +0000", "id" : "43a1c71b99857c13815467fcdacd4d0cc18253f7", "msg" : "For clubb:ticket:788:", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "a962121436c1d8fe111f625513733b6e28d5c983", "timestamp" : 1465496116000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Renamed C7 to Cx in appropriate places.\u000a\u000aRef: cam:ticket:59\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8130 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9db4228a9996907f46488ec7e6733cdf28e58ab0\u000a", "date" : "2016-06-09 18:15:16 +0000", "id" : "a962121436c1d8fe111f625513733b6e28d5c983", "msg" : "Renamed C7 to Cx in appropriate places.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "71e67a099e4ecd80abfd3d6e0d25acfa5c6334cb", "timestamp" : 1465587760000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI am effectively disabling the use of `shear_sqd` in computing `Richardson_num` in the default code.\u000a\u000aOutput should be affected only in non-default code.\u000a\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8131 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6f10cf99569442c0bfb8b4814d6528669e5f1b00\u000a", "date" : "2016-06-10 19:42:40 +0000", "id" : "71e67a099e4ecd80abfd3d6e0d25acfa5c6334cb", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "d49aa6e935a68e226ab41d125afb5e1a8c68d052", "timestamp" : 1465606774000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:59:\u000a\u000aI am committing various changes to the `Richardson_num` code, such as increasing the averaging width and the `Richardson_num` below-ground value.\u000a\u000aOutput changes only in non-default (i.e., esoteric) configurations of CLUBB.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8132 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 0fb298192f03271b416be42967f0283db679eade\u000a", "date" : "2016-06-11 00:59:34 +0000", "id" : "d49aa6e935a68e226ab41d125afb5e1a8c68d052", "msg" : "For cam:ticket:59:", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "b5cf8ffd94155c1b1eb83dc383b8adffc62e150a", "timestamp" : 1465758756000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "I made it a default to use 0 instead of cloud_frac_min in the B.V. frequency calculation.\u000a\u000aI also changed `Richardson_num_max` to 400.\u000a\u000aThis commit will affect CLUBB output only in non-default configurations.\u000a\u000aRef: cam:ticket:61.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8133 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 5e9cf12eca6b97bf81881796ef7f1ebcde68a4e7\u000a", "date" : "2016-06-12 19:12:36 +0000", "id" : "b5cf8ffd94155c1b1eb83dc383b8adffc62e150a", "msg" : "I made it a default to use 0 instead of cloud_frac_min in the B.V. frequency calculation.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90" ], "commitId" : "be1c3106832fe19595c6446e12a254d55b452fc1", "timestamp" : 1467930965000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:67:\u000a\u000aI refactored the computation of rsatl_par_j into a function.\u000a\u000aOutput is bin-diff identical. In the future, this function will do many exciting things.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8180 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6939bd1b43cee733a2028da7bbb654f5427a106f\u000a", "date" : "2016-07-07 22:36:05 +0000", "id" : "be1c3106832fe19595c6446e12a254d55b452fc1", "msg" : "For cam:ticket:67:", "paths" : [ { "editType" : "edit", "file" : "mixing_length.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90" ], "commitId" : "9241d3160bc3f08cea06a367363bac429b0a4801", "timestamp" : 1467933236000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:67:\u000a\u000aI added the ability to use ice in the computation of rsatl_par.\u000a\u000aThis is wrapped in a flag, `l_include_ice`, which is F by default, keeping output bin-diff.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8182 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f69754e5f7c966f12ce435d22662adcb41959f50\u000a", "date" : "2016-07-07 23:13:56 +0000", "id" : "9241d3160bc3f08cea06a367363bac429b0a4801", "msg" : "For cam:ticket:67:", "paths" : [ { "editType" : "edit", "file" : "mixing_length.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90" ], "commitId" : "a65a2716e9a84c14d8ce00274c7d8ceb64cec15b", "timestamp" : 1467934375000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Code improvements.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8183 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 784a92ac88af2f4b23ccd2a75d95f6044beef1d5\u000a", "date" : "2016-07-07 23:32:55 +0000", "id" : "a65a2716e9a84c14d8ce00274c7d8ceb64cec15b", "msg" : "Code improvements.", "paths" : [ { "editType" : "edit", "file" : "mixing_length.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90" ], "commitId" : "1241c9306c125114c5e2cf74fa5ddf3c0c575ce2", "timestamp" : 1467935024000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Vince noticed that `sat_mixrat_liq` or `sat_mixrat_ice` will be left uninitialized if `sat_ice_ratio == 0` or `sat_ice_ratio == 1`. No more!\u000a\u000aFor cam:ticket:67.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8185 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 1a2d64da0eaa23681153f9377c943ba076f6f7d9\u000a", "date" : "2016-07-07 23:43:44 +0000", "id" : "1241c9306c125114c5e2cf74fa5ddf3c0c575ce2", "msg" : "Vince noticed that `sat_mixrat_liq` or `sat_mixrat_ice` will be left uninitialized if `sat_ice_ratio == 0` or `sat_ice_ratio == 1`. No more!", "paths" : [ { "editType" : "edit", "file" : "mixing_length.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "bb6808a33f9a42df19a9d0a3f2d28fe1e7df96bb", "timestamp" : 1468432966000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:32, I made `hydrometp2` `intent(out)` in CLUBB, since the input value is not used.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8195 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4bfa90e34669bb3e6b15b9b4307a62567624763a\u000a", "date" : "2016-07-13 18:02:46 +0000", "id" : "bb6808a33f9a42df19a9d0a3f2d28fe1e7df96bb", "msg" : "For cam:ticket:32, I made `hydrometp2` `intent(out)` in CLUBB, since the input value is not used.", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "aa8a3d9da135f520be59cdf4a39b6835519350ab", "timestamp" : 1468433903000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Fixed a comment.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8196 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8551b37c3d21f0eefe0678cb265e12d0d7546021\u000a", "date" : "2016-07-13 18:18:23 +0000", "id" : "aa8a3d9da135f520be59cdf4a39b6835519350ab", "msg" : "Fixed a comment.", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90" ], "commitId" : "4457ce79704986f96788b965685a759a6a14654d", "timestamp" : 1468627919000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:788:\u000a\u000aI made sure `wp3_pr3_rhs` was initialized when `l_use_wp3_pr3 = F`, so that zero is output to stats, rather than an uninitialized variable. This should resolve the failures of the Nightly Uninitialized Variables Test (build:15959) and the Nightly OpenMP Test (build:15953) last night.\u000a\u000aThis commit is BIT_CHANGING because a variable which was output as uninitialized (usually NaN) before is now output as zero. However, answers remain unchanged as long as `l_use_wp3_pr3 = F`.\u000a\u000aIt is worth noting that clubb:r8198 also caused the Nightly Bin Diff Regression Test (build:15948) to fail because it added a stats output and was not marked with a BIT_CHANGING tag. Including the tag in this commit will resolve that failure, and we should see a lovely shade of spring green tomorrow morning.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8199 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 88ee4f1f9682fbaf959972a78008162165f1b04f\u000a", "date" : "2016-07-16 00:11:59 +0000", "id" : "4457ce79704986f96788b965685a759a6a14654d", "msg" : "For clubb:ticket:788:", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "942ecdc6d4c071de7a24f6eb24c549ec417eddb4", "timestamp" : 1468876031000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:792:\u000a\u000aI changed some CLUBB parameters:\u000a{{{\u000al_vert_avg_closure = .false.\u000al_trapezoidal_rule_zt = .false.\u000al_trapezoidal_rule_zm = .false.\u000al_call_pdf_closure_twice = .false.\u000al_use_cloud_cover = .false.\u000a}}}\u000a\u000aThis commit is BIT_CHANGING: answers will be changed in all cases.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8200 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8b469e885afa1be9b6055abc2a7d52ae6fe7d8fe\u000a", "date" : "2016-07-18 21:07:11 +0000", "id" : "942ecdc6d4c071de7a24f6eb24c549ec417eddb4", "msg" : "For clubb:ticket:792:", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "842f4771aae526e1c2614eecca67aa77b12ac1ce", "timestamp" : 1468888712000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:792:\u000a\u000aI initialized some variables that were before uninitialized when `l_vert_avg_closure = F`. These uninitialized variables were used only for stats.\u000a\u000aThis commit is BIT_CHANGING in the \"_zm\" output file because some variables, such as `cloud_frac_zm`, that were output as undefined before are now output as zero. However, the simulation result does not change as a result of this commit.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8201 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 21ad814bfcfd439dd5faf226745d30aad397a9f7\u000a", "date" : "2016-07-19 00:38:32 +0000", "id" : "842f4771aae526e1c2614eecca67aa77b12ac1ce", "msg" : "For clubb:ticket:792:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "5097bb3b46bc376688d970c63fcfc2b2dbe81ea5", "timestamp" : 1468951858000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:792, I added more initializations for uninitialized variables.\u000a\u000aThis commit is probably BIT_CHANGING, because output variables that were uninitialized are now output as zero.\u000a\u000aWith this commit, CLUBB runs to completion with the Oracle compiler, resolving build:15997. Hopefully the OpenMP test (build:15991) will follow suit.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8202 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e37f06af1cecae4ccd91298942c3fc3c9bb3780f\u000a", "date" : "2016-07-19 18:10:58 +0000", "id" : "5097bb3b46bc376688d970c63fcfc2b2dbe81ea5", "msg" : "For clubb:ticket:792, I added more initializations for uninitialized variables.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "afa64ca95f3398b1df10f9d3159711a052d12a6b", "timestamp" : 1468957085000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "When l_avg_Lscale is turned on but the plume-centered calculation is disabled,\u000aI changed the \"sample points\" chosen to pick the theta-l point associated with\u000athe rt point based on the sign of rtpthlp.\u000a\u000aSince the l_avg_Lscale flag is turned off my default, the results found in\u000aGrADS output files from this revision are an exact match to the results found in\u000aGrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8203 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a98b05fd3e2d332d890fbdf8130ed339f2238b09\u000a", "date" : "2016-07-19 19:38:05 +0000", "id" : "afa64ca95f3398b1df10f9d3159711a052d12a6b", "msg" : "When l_avg_Lscale is turned on but the plume-centered calculation is disabled,", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "output_grads.F90" ], "commitId" : "eb0be9200bae51409573b16aaab4d40821477003", "timestamp" : 1468966137000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:792:\u000a\u000aI removed the `CLUBB_CAM` preprocessor directive surrounding the RH_postPDF fix, and instead added a new flag, `l_rcm_supersat_adj`, set to false by default.\u000a\u000aThis changeset produces bin-diff identical output.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8204 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: d2869a87f94e19e634e8eaaf6ca296f21994506f\u000a", "date" : "2016-07-19 22:08:57 +0000", "id" : "eb0be9200bae51409573b16aaab4d40821477003", "msg" : "For clubb:ticket:792:", "paths" : [ { "editType" : "edit", "file" : "output_grads.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_clubb_utilities.F90", "stats_variables.F90", "advance_clubb_core_module.F90", "stats_zt_module.F90" ], "commitId" : "3137b73c6c8a14a6eec8eee3cf7c53ae38420b2e", "timestamp" : 1468967755000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:792, I added a new stats output, `rcm_supersat_adj`, to record the degree of rcm adjustment. It is not output by default. This changeset does not change output.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8205 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c399236ebfe9a2691198f3f87952e0a757833a2e\u000a", "date" : "2016-07-19 22:35:55 +0000", "id" : "3137b73c6c8a14a6eec8eee3cf7c53ae38420b2e", "msg" : "For clubb:ticket:792, I added a new stats output, `rcm_supersat_adj`, to record the degree of rcm adjustment. It is not output by default. This changeset does not change output.", "paths" : [ { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "f61e9048127a441fc4fce451ecf7a25f4a3eb9c5", "timestamp" : 1468971135000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "I renamed RH_postPDF to rel_humidity.\u000a\u000aFor clubb:ticket:792.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8206 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c3a4c87b8438e6b3bd9404e5b16a5fb09d05e391\u000a", "date" : "2016-07-19 23:32:15 +0000", "id" : "f61e9048127a441fc4fce451ecf7a25f4a3eb9c5", "msg" : "I renamed RH_postPDF to rel_humidity.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "2b9c0abf5f05672f14e2ffc9c479ec51c03eb187", "timestamp" : 1468977586000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:792. rsat actually should be recomputed here before output, because it will change if `l_rcm_supersat_adj = T`.\u000a\u000aThis commit doesn't change output by default, because `l_rcm_supersat_adj = F`.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8207 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 424d83775df122fb2114c6dc7a3276a63690a881\u000a", "date" : "2016-07-20 01:19:46 +0000", "id" : "2b9c0abf5f05672f14e2ffc9c479ec51c03eb187", "msg" : "For clubb:ticket:792. rsat actually should be recomputed here before output, because it will change if `l_rcm_supersat_adj = T`.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "b5e36c5cc98bee2a71b6e1aac647ef04740481ca", "timestamp" : 1468977936000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:792. I am reusing the `rel_humidity` variable for output, for no particular reason.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8208 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c3aef1ca27eb0b5ce179c9910fe52cea575dbb33\u000a", "date" : "2016-07-20 01:25:36 +0000", "id" : "b5e36c5cc98bee2a71b6e1aac647ef04740481ca", "msg" : "For clubb:ticket:792. I am reusing the `rel_humidity` variable for output, for no particular reason.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "f0c489f1ec91fede9e93674f5ad8da5adcc72ff2", "timestamp" : 1468978272000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:792!!!! I set `l_rcm_supersat_adj = T` by default, in both source code and namelist.\u000a\u000aThis commit is BIT_CHANGING. For most cases, results do not change because `l_vert_avg_closure = F`. However, at least twp_ice changes slightly.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8209 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e6bc9207fc8f2130454a06cbca7fbcffe4860805\u000a", "date" : "2016-07-20 01:31:12 +0000", "id" : "f0c489f1ec91fede9e93674f5ad8da5adcc72ff2", "msg" : "For clubb:ticket:792!!!! I set `l_rcm_supersat_adj = T` by default, in both source code and namelist.", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "85557a043ebf71d33df4cb766e602ecc4a507346", "timestamp" : 1468979135000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "As requested, I am adding a warning message (debug level 1) when spurious supersaturation is removed.\u000a\u000aFor clubb:ticket:792.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8210 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a2c8d6b5c2bfd632c12e47335b95d5fba6e9dc1a\u000a", "date" : "2016-07-20 01:45:35 +0000", "id" : "85557a043ebf71d33df4cb766e602ecc4a507346", "msg" : "As requested, I am adding a warning message (debug level 1) when spurious supersaturation is removed.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "5a524a2d05c67e5b0eba255e0804760871ccbca6", "timestamp" : 1468979203000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "Comment.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8211 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: d58325cd8606f6c4461777a20d0d1b0c3f13a68d\u000a", "date" : "2016-07-20 01:46:43 +0000", "id" : "5a524a2d05c67e5b0eba255e0804760871ccbca6", "msg" : "Comment.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90" ], "commitId" : "421941ece8fe45eff7e5382bf99596c2c681e527", "timestamp" : 1469028463000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For clubb:ticket:788, I added a threadprivate entry for `iwp3_pr3`, which will hopefully resolve the failure of the OpenMP test (build:16010).\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8212 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 41002aa1be883eea7f5cee997cf5384d81c4a333\u000a", "date" : "2016-07-20 15:27:43 +0000", "id" : "421941ece8fe45eff7e5382bf99596c2c681e527", "msg" : "For clubb:ticket:788, I added a threadprivate entry for `iwp3_pr3`, which will hopefully resolve the failure of the OpenMP test (build:16010).", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_grads.F90" ], "commitId" : "3cd78611e048d03e25589bae4bd6d754156d9a99", "timestamp" : 1469031826000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "I removed a spurious print statement.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8216 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: d0b98149fb8261c773b77d91b7feada06c134e41\u000a", "date" : "2016-07-20 16:23:46 +0000", "id" : "3cd78611e048d03e25589bae4bd6d754156d9a99", "msg" : "I removed a spurious print statement.", "paths" : [ { "editType" : "edit", "file" : "output_grads.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "parameters_tunable.F90", "model_flags.F90", "parameter_indices.F90", "clubb_api_module.F90", "surface_varnce_module.F90" ], "commitId" : "e20752ab491ab93d8c23011bad3f73e6c914a7c9", "timestamp" : 1469126912000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/raut", "fullName" : "raut" }, "authorEmail" : "raut@uwm.edu", "comment" : "For cam:ticket:73:\u000a\u000aTo facilitate committing tuning changes to CAM, I added a new tuning parameter, `up2_vp2_factor`, and a new flag, `l_use_C11_Richardson`. I made various other changes.\u000a\u000aOutput is bin-diff identical for all cases.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8220 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: adaa047dde0e71089e9f336095fa038de4fb2a6d\u000a", "date" : "2016-07-21 18:48:32 +0000", "id" : "e20752ab491ab93d8c23011bad3f73e6c914a7c9", "msg" : "For cam:ticket:73:", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "surface_varnce_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "sponge_layer_damping.F90", "advance_windm_edsclrm_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "644805cc11020c09f7f7341fac1620b7cdb6200e", "timestamp" : 1470267879000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am beginning to generalize the sponge damping code so that it can be applied to\u000afields such as wp2, up2, and vp2.\u000a\u000aAs part of this change, I am reverting the interpolation of sponge damping time\u000ascale, tau_sponge_damp, from linear interpolation to the kind of interpolation that\u000ais used in SAM LES.\u000a\u000aSince the CGILS cases use sponge damping for mean fields toward the top of the\u000adomain, the results of this change will be BIT_CHANGING. However, the effect is\u000aminor.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8228 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 23464bb22b7d8a9ce22bd69c0495c047bb5cc36c\u000a", "date" : "2016-08-03 23:44:39 +0000", "id" : "644805cc11020c09f7f7341fac1620b7cdb6200e", "msg" : "I am beginning to generalize the sponge damping code so that it can be applied to", "paths" : [ { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "sponge_layer_damping.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "stats_variables.F90", "stats_zm_module.F90", "sponge_layer_damping.F90", "stats_zt_module.F90" ], "commitId" : "0c83ceeaa0aa916808a262473b8df43bb02fdfb3", "timestamp" : 1470353741000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added all the coding infrastructure to perform sponge damping (and record\u000aits effects on the budgets) for wp2, wp3, up2, and vp2. This code is turned off\u000aby default. Additionally, I haven't added the stats to stats.in files yet.\u000a\u000aAs a result, the results found in GrADS output files from this revision are an\u000aexact match to the results found in GrADS output files from the previous\u000arevision for all cases.\u000a\u000aLarson Group Internal Trac System Reference: papers:ticket:14.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8229 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: abe95893a6e5716d55769a9090c78f29be20d886\u000a", "date" : "2016-08-04 23:35:41 +0000", "id" : "0c83ceeaa0aa916808a262473b8df43bb02fdfb3", "msg" : "I have added all the coding infrastructure to perform sponge damping (and record", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "sponge_layer_damping.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "index_mapping.F90" ], "commitId" : "bde6e65ded8cec97c1df34c94091e882b55408e4", "timestamp" : 1475159422000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "\u000aI added comments about the two sets of indices in CLUBB,\u000athe ii indices and the iiPDF indices. These are used\u000ato index the hydrometeors and PDF variates, respectively.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8255 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9657730a0639973c1006be330637e3d9fcc56150\u000a", "date" : "2016-09-29 14:30:22 +0000", "id" : "bde6e65ded8cec97c1df34c94091e882b55408e4", "msg" : "", "paths" : [ { "editType" : "edit", "file" : "index_mapping.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "stats_lh_sfc_module.F90" ], "commitId" : "b6c2764136da24f7734273fe582d1021db667c10", "timestamp" : 1476799815000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/roessle9", "fullName" : "roessle9" }, "authorEmail" : "roessle9@uwm.edu", "comment" : "clubb:ticket:796\u000a\u000aI added the sum and the average of the sample point weights to the lh surface output.\u000aThe variables are called lh_sample_weights_sum and lh_sample_weights_avg and will be \u000awritten with the standard_stats output configuration.\u000a\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8261 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 367b148899348e1a912288af135c165818fab7e9\u000a", "date" : "2016-10-18 14:10:15 +0000", "id" : "b6c2764136da24f7734273fe582d1021db667c10", "msg" : "clubb:ticket:796", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_lh_sfc_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "a3ffb88e1500efe97673ee2d43487617c0a0ff24", "timestamp" : 1476822775000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added some parameter value checking in subroutine setup_parameters.\u000a\u000aWhen l_clip_semi_implicit is set to .false. (which it is by default),\u000athe new code enforces C6rt = C6thl, C6rtb = C6thlb, C6rtc = C6thlc,\u000aand C6rt_Lscale0 = C6thl_Lscale0. This will prevent an inconsistent\u000acalculation of wpthlp_pr1 in this scenario, while preventing the user\u000afrom thinking that the C6thl set of parameters do anything in this\u000ascenario.\u000a\u000aLarson Group Internal Trac System Reference: clubb:ticket:794.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8262 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: bf2c9cc9ecbd57d0b8023e100f1d73156d055b65\u000a", "date" : "2016-10-18 20:32:55 +0000", "id" : "a3ffb88e1500efe97673ee2d43487617c0a0ff24", "msg" : "I added some parameter value checking in subroutine setup_parameters.", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "c0f71070adf163ea058fe79592c6d476aadc2aa6", "timestamp" : 1480576433000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I finally have a standalone version of the new subroutine, generate_pdf_params,\u000athat compiles. It is not currently called from any point in the code. Just\u000agetting this ready has been an accomplishment.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8281 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f8d6c7c4529e72e216b9de62b7dfe2aedf44f438\u000a", "date" : "2016-12-01 07:13:53 +0000", "id" : "c0f71070adf163ea058fe79592c6d476aadc2aa6", "msg" : "I finally have a standalone version of the new subroutine, generate_pdf_params,", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "f5ee4a59559816b441a43d16faeb8b458ea8065a", "timestamp" : 1480577925000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Some code within advance_clubb_core that is found within CAM_CLUBB preprocessor\u000aflags requests rcp2_zt and thlprcp as output.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8282 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 198ec6e782719c2321a23acf48820ea841761e1c\u000a", "date" : "2016-12-01 07:38:45 +0000", "id" : "f5ee4a59559816b441a43d16faeb8b458ea8065a", "msg" : "Some code within advance_clubb_core that is found within CAM_CLUBB preprocessor", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "33092de95e77d84d9857adebcf870b293cb613cd", "timestamp" : 1480581434000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "The perturbation Lscale code requires rtm_frz, thlm_frz, and pdf_params_frz to\u000abe output from generate_pdf_params, and the stats_accumulate code requires that\u000arcm_supersat_adj is output as well.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8283 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 1cb9f8be3845cc6a7aa6cf3c372cdf9491c02d19\u000a", "date" : "2016-12-01 08:37:14 +0000", "id" : "33092de95e77d84d9857adebcf870b293cb613cd", "msg" : "The perturbation Lscale code requires rtm_frz, thlm_frz, and pdf_params_frz to", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "617c5f2a850ab442bd934af221554ae218fcccbb", "timestamp" : 1480581973000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a missing intent(out) statement.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8284 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b5482df6be9a1bf3edac10c606dfb183ca5c6cd6\u000a", "date" : "2016-12-01 08:46:13 +0000", "id" : "617c5f2a850ab442bd934af221554ae218fcccbb", "msg" : "I added a missing intent(out) statement.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "7cc27e32c42a7c9441b678648e3aa91f8280d038", "timestamp" : 1480615444000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have interfaced the new subroutine containing all of the PDF closure-related\u000astuff with the code. When the subroutine call is made from the location of\u000athe code it is replacing, the results in GrADS output files from the new\u000arevision are an exact match to the results in GrADS output files from the\u000aprevious revision for all cases using CLUBB's default configuration.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8285 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ce07a9d5a621c43d084c67071fa3f694be010651\u000a", "date" : "2016-12-01 18:04:04 +0000", "id" : "7cc27e32c42a7c9441b678648e3aa91f8280d038", "msg" : "I have interfaced the new subroutine containing all of the PDF closure-related", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "1cece97462a9a5d534b5130012ed38d5b9e23d66", "timestamp" : 1480616963000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I got rid of some variables that were brought into advance_clubb_core by use statements\u000athat are no longer necessary. This eliminates new compiler warnings.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8286 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 48e38f266be67c2ef7af997b682505434d7541c3\u000a", "date" : "2016-12-01 18:29:23 +0000", "id" : "1cece97462a9a5d534b5130012ed38d5b9e23d66", "msg" : "I got rid of some variables that were brought into advance_clubb_core by use statements", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "74d4f7f23ddc2d22d680a6c63cd3fedd86ab83f9", "timestamp" : 1480617705000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I cleaned up more compiler warnings for unused variables. The warnings came from g95.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8287 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ae7227875369b954d7e996e6ba845fb0cf8e6fdb\u000a", "date" : "2016-12-01 18:41:45 +0000", "id" : "74d4f7f23ddc2d22d680a6c63cd3fedd86ab83f9", "msg" : "I cleaned up more compiler warnings for unused variables. The warnings came from g95.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "65844eccfd6e78d303f9e2b529eabf24f0e95fd6", "timestamp" : 1480696738000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added a second call to subroutine generate_pdf_params. This one occurs\u000aafter predictive fields have been advanced.\u000a\u000aI have also added code to call generate_pdf_params at its original location, at\u000athe new location, or at both locations. The appropriate anti-idiot code is\u000acurrently located in advance_clubb_core, but will be moved in the future.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8288 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: da44da508e6af8609aa44a634f1a8a8ecfef9fd5\u000a", "date" : "2016-12-02 16:38:58 +0000", "id" : "65844eccfd6e78d303f9e2b529eabf24f0e95fd6", "msg" : "I have added a second call to subroutine generate_pdf_params. This one occurs", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "652b8ad1bd732665a1c5e813186c434fe84ef4f4", "timestamp" : 1480701998000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I moved the setting of qclvar and thlprcp_out to after the second call to\u000asubroutine generate_pdf_params. This way, rcp2_zt and thlprcp don't need to be\u000apassed in and out of subroutine advance_clubb_core.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8289 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b0697278dc51c875d2131da2dd818c6566983029\u000a", "date" : "2016-12-02 18:06:38 +0000", "id" : "652b8ad1bd732665a1c5e813186c434fe84ef4f4", "msg" : "I moved the setting of qclvar and thlprcp_out to after the second call to", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "f2b2a33f8d2799df9309411d6a38c945f6e0d69d", "timestamp" : 1480704149000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have declared the l_use_ice_latent option and the l_call_pdf_closure_twice\u000aoption to be imcompatible with the ipdf_post_advance_fields option. This\u000aprevents seldom-used variables, such as rtm_frz, thlm_prz, pdf_params_frz, and\u000apdf_params_zm, from having to be passed in and out of subroutine\u000aadvance_clubb_core when the PDF is only called after predictive fields have\u000abeen advanced.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8290 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 7fd1cf79fe8112f1d96b0e8eb56b700190daef28\u000a", "date" : "2016-12-02 18:42:29 +0000", "id" : "f2b2a33f8d2799df9309411d6a38c945f6e0d69d", "msg" : "I have declared the l_use_ice_latent option and the l_call_pdf_closure_twice", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "66ed30caf14d248db6cf1fcdf4f13abb1a2ec053", "timestamp" : 1480705448000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a local cslculation of sigma_sqd_w near the top of subroutine\u000aadvance_clubb_core in a scenario when the PDF is not called until after the\u000aadvancement of the predictive fields (in other words, when\u000aipdf_post_advance_fields is selected).\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8291 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b8c687375bd2a3ba9f8f113597ee02e6a66b440b\u000a", "date" : "2016-12-02 19:04:08 +0000", "id" : "66ed30caf14d248db6cf1fcdf4f13abb1a2ec053", "msg" : "I added a local cslculation of sigma_sqd_w near the top of subroutine", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "5d635a9256509ec7a5a327a323966cc64f5c58a4", "timestamp" : 1480710048000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am changing the inputs and outputs of subroutine advance_clubb_core so that\u000arcm, cloud_frac, wpthvp, wp2thvp, rtpthvp, thlpthvp, sclrpthvp, and pdf_params\u000aare all passed through as intent(inout) variables.\u000a\u000aThis change allows for CLUBB's PDF to be called after the predictive fields are\u000aadvanced when the appropriate option is set.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases. The\u000adefault option is still to call CLUBB's PDF in its historical location, which\u000ais prior to the advancement of the predictive fields.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8293 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9e49c5e8030cb7838d4a1582f3a6c2aa3ee93f05\u000a", "date" : "2016-12-02 20:20:48 +0000", "id" : "5d635a9256509ec7a5a327a323966cc64f5c58a4", "msg" : "I am changing the inputs and outputs of subroutine advance_clubb_core so that", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "090114c800f5dbd574978c07c4d5558ca86c69ee", "timestamp" : 1480785769000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added code so that stats that are internal to subroutine generate_pdf_params\u000aare only called once every model timestep when the ipdf_pre_post_advance_fields\u000aoption, which calls the aforementioned subroutine twice, is called.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8294 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 1b25e9166559c4323fc8182969a948e9397c9c39\u000a", "date" : "2016-12-03 17:22:49 +0000", "id" : "090114c800f5dbd574978c07c4d5558ca86c69ee", "msg" : "I added code so that stats that are internal to subroutine generate_pdf_params", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "582c3bf747b2fa69443e8f75e18dae7c861ecb4c", "timestamp" : 1481662775000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have updated subroutine advance_clubb_core so that pdf_params_zm is now passed\u000ainto and out of it as an intent(inout) variables. This enables it to be\u000apreserved from timestep to timestep. This also removes the flag\u000al_call_pdf_closure_twice from being blacklisted when ipdf_post_advance_fields\u000ais used as the ipdf_call_placement option.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision of this\u000abranch for all cases (with the default configuration of\u000aipdf_call_placement = ipdf_pre_advance_fields).\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/branches/reorder_advance_clubb_core@8314 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 7326a7a09d64f47ad1738b2f42b3752f9ccc1bcf\u000a", "date" : "2016-12-13 20:59:35 +0000", "id" : "582c3bf747b2fa69443e8f75e18dae7c861ecb4c", "msg" : "I have updated subroutine advance_clubb_core so that pdf_params_zm is now passed", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "index_mapping.F90", "diagnose_correlations_module.F90", "setup_clubb_pdf_params.F90", "array_index.F90", "clubb_api_module.F90", "corr_varnce_module.F90" ], "commitId" : "cdaeea61eda638c5b85824407830ec4b16a5abe5", "timestamp" : 1484122852000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/savva", "fullName" : "savva" }, "authorEmail" : "savva@uwm.edu", "comment" : "Ticket #799 -- Moved iiPDF_... module variables from module corr_varnce_module to module array_index -- The results of the priority cases are bin-diff identical\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8339 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: eebc4d9c6aec2d6a54b9769d4dbac2a14ee20c8f\u000a", "date" : "2017-01-11 08:20:52 +0000", "id" : "cdaeea61eda638c5b85824407830ec4b16a5abe5", "msg" : "Ticket #799 -- Moved iiPDF_... module variables from module corr_varnce_module to module array_index -- The results of the priority cases are bin-diff identical", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "corr_varnce_module.F90" }, { "editType" : "edit", "file" : "array_index.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "index_mapping.F90" }, { "editType" : "edit", "file" : "diagnose_correlations_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "diagnose_correlations_module.F90", "index_mapping.F90", "setup_clubb_pdf_params.F90", "clubb_api_module.F90", "corr_varnce_module.F90", "matrix_operations.F90" ], "commitId" : "2d21676fa45bca8e71ae19a0844aba77789b4127", "timestamp" : 1484287146000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/savva", "fullName" : "savva" }, "authorEmail" : "savva@uwm.edu", "comment" : "Ticket #798 -- Renamed d_variables to pdf_dim -- The results of the priority cases are bin-diff identical\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8341 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 94b0bd96aa64476c342b0fa90bbf9c28df1fb468\u000a", "date" : "2017-01-13 05:59:06 +0000", "id" : "2d21676fa45bca8e71ae19a0844aba77789b4127", "msg" : "Ticket #798 -- Renamed d_variables to pdf_dim -- The results of the priority cases are bin-diff identical", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "diagnose_correlations_module.F90" }, { "editType" : "edit", "file" : "corr_varnce_module.F90" }, { "editType" : "edit", "file" : "matrix_operations.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "index_mapping.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "729952dc7d1cce36a1243a7968fc10b1f9d5e482", "timestamp" : 1484944004000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "\u000aI added a blank line, which will not change answers.\u000aHowever, it will test if the AUTO_COMMIT feature is still\u000aworking after other:r537.\u000a\u000aFor other:ticket:439.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8346 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b9caa5a3e8936342fc662afee698c65f32fe02cb\u000a", "date" : "2017-01-20 20:26:44 +0000", "id" : "729952dc7d1cce36a1243a7968fc10b1f9d5e482", "msg" : "", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "129209e51573452d8eef3328cff95a1aa34db1e9", "timestamp" : 1485187160000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "\u000aI added a blank line merely to trigger the AUTO_COMMIT updater.\u000aIt won't change answers.\u000a\u000aFor other:ticket:439.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8347 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 15a16bb6e0e12fb0b4afa9e1f386936a471d7f93\u000a", "date" : "2017-01-23 15:59:20 +0000", "id" : "129209e51573452d8eef3328cff95a1aa34db1e9", "msg" : "", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_parameter_module.F90" ], "commitId" : "f613fb4ce5602b4624d4637df30dd3069057a94c", "timestamp" : 1485383631000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a new subroutine, init_pdf_params, to pdf_parameter_module.F90.\u000aThis allows for an easier way of initializing variables of type pdf_parameter.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8348 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 0411cc2ab856908a8153bc51bdcdc93638767e24\u000a", "date" : "2017-01-25 22:33:51 +0000", "id" : "f613fb4ce5602b4624d4637df30dd3069057a94c", "msg" : "I added a new subroutine, init_pdf_params, to pdf_parameter_module.F90.", "paths" : [ { "editType" : "edit", "file" : "pdf_parameter_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_parameter_module.F90", "setup_clubb_pdf_params.F90" ], "commitId" : "baeba5205aa0fdde1c16c1d735011a9d6eeb96fd", "timestamp" : 1485385275000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I renamed the subroutine pack_pdf_params found in setup_clubb_pdf_params.F90\u000aas subroutine pack_hydromet_pdf_params.\u000a\u000aI took out the ifdef CLUBB_CAM preprocessor flags around some declarations\u000aand subroutines in pdf_parameter_module.F90 because they are also going to\u000abe called by WRF-CLUBB (and possibly SAM-CLUBB).\u000a\u000aThe results in GrADS output files from this revision is an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8349 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e7fe6b09e563382cdf65378edd286fa3d6b9c7c9\u000a", "date" : "2017-01-25 23:01:15 +0000", "id" : "baeba5205aa0fdde1c16c1d735011a9d6eeb96fd", "msg" : "I renamed the subroutine pack_pdf_params found in setup_clubb_pdf_params.F90", "paths" : [ { "editType" : "edit", "file" : "pdf_parameter_module.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "variables_diagnostic_module.F90", "variables_prognostic_module.F90" ], "commitId" : "92d57479e3f56b93ba46a1773be93ab46078b8b8", "timestamp" : 1485386473000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am now using the new subroutine init_pdf_params to initialize the\u000avalues of the PDF parameters of type pdf_parameter.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision for\u000aall cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8350 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 24899b7617ce4e89fd6ba4406625230c9f18dfbb\u000a", "date" : "2017-01-25 23:21:13 +0000", "id" : "92d57479e3f56b93ba46a1773be93ab46078b8b8", "msg" : "I am now using the new subroutine init_pdf_params to initialize the", "paths" : [ { "editType" : "edit", "file" : "variables_prognostic_module.F90" }, { "editType" : "edit", "file" : "variables_diagnostic_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "149845b7ef749677b049d594d2e87e8fd4e0ce92", "timestamp" : 1485387548000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I removed the CAM_CLUBB preprocessor directives from pack_pdf_params_api,\u000aunpack_pdf_params_api, and num_pdf_params so that they can be accessed\u000afrom WRF-CLUBB.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision for\u000aall cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8351 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 749c0e32563c60a53b924f1ff350fbc0e82e03e3\u000a", "date" : "2017-01-25 23:39:08 +0000", "id" : "149845b7ef749677b049d594d2e87e8fd4e0ce92", "msg" : "I removed the CAM_CLUBB preprocessor directives from pack_pdf_params_api,", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90", "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90", "pdf_closure_module.F90", "advance_windm_edsclrm_module.F90", "matrix_operations.F90" ], "commitId" : "0e6ad4f7bd68117de009609e955a67219d396655", "timestamp" : 1486693085000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/savva", "fullName" : "savva" }, "authorEmail" : "savva@uwm.edu", "comment" : "clubb:ticket:800 -- Changed fatal errors statements to debug level 0.\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8355 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 842caa8112d9655db44e72c6906c8b6efd4e60fe\u000a", "date" : "2017-02-10 02:18:05 +0000", "id" : "0e6ad4f7bd68117de009609e955a67219d396655", "msg" : "clubb:ticket:800 -- Changed fatal errors statements to debug level 0.", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "mixing_length.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "matrix_operations.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "stats_clubb_utilities.F90" ], "commitId" : "8907a3787230cb9be6c3fea6254676a199330a13", "timestamp" : 1487706416000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated CLUBB stats so that wpthvp, wp2thvp, rtpthvp, and thlpthvp\u000aare passed into subroutine stats_accumulate rather than be brought in\u000aby USE statements. This will allow these variables to be output\u000acorrectly in the CLUBB stats grid column in WRF-CLUBB runs.\u000a\u000aThe results in GrADS output files from this revision are an exact\u000amatch to the results in GrADS output files from the previous\u000arevision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8361 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b7dbabdfea13cf54aa5d8f089ccbc780be0ddd1d\u000a", "date" : "2017-02-21 19:46:56 +0000", "id" : "8907a3787230cb9be6c3fea6254676a199330a13", "msg" : "I updated CLUBB stats so that wpthvp, wp2thvp, rtpthvp, and thlpthvp", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_clubb_utilities.F90", "stats_zm_module.F90", "advance_clubb_core_module.F90", "stats_variables.F90" ], "commitId" : "cf19b99a6421ab461a8aba9db5cffe0045a2c8c2", "timestamp" : 1487877183000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added the coding infrastructure to output additional statistics\u000aw_1_zm, w_2_zm, varnce_w_1_zm, varnce_w_2_zm, and mixt_frac_zm. These are\u000anecessary for CLUBB restarts if the ipdf_call_placement flag is set to\u000aipdf_post_advance_fields and the l_call_pdf_closure_twice flag is turned on.\u000a\u000aAdditionally, I have added all the necessary CLUBB fields to input fields and\u000ato CLUBB restarts so that restarts should be successful if the\u000aipdf_call_placement flag is set to ipdf_post_advance_fields.\u000a\u000aI have not added the new stats to the stats.in files yet. With that, the\u000aresults in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aLarson Group Internal Trac System Reference: cam:ticket:87.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8362 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4289d2475f8d595b9e6dc2bb91286da307b49241\u000a", "date" : "2017-02-23 19:13:03 +0000", "id" : "cf19b99a6421ab461a8aba9db5cffe0045a2c8c2", "msg" : "I have added the coding infrastructure to output additional statistics", "paths" : [ { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "797509049869e44636489bd02d8d7359dd85ed0d", "timestamp" : 1488057545000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "This is a bug fix for the Sun compiler. The variables pdf_params_zm and\u000apdf_params_frz, which aren't used with CLUBB's current default settings, are\u000aintent(out) of subroutine generate_pdf_params. While they are initialized in\u000aCLUBB, they were not initialized in subroutine generate_pdf_params, and since\u000athey weren't being used by default, NaN values were being passed out of\u000agenerate_pdf_params, overwriting the 0 values that they had been initialized to.\u000aThis bug fix initializes pdf_params_zm and pdf_params_frz locally within\u000asubroutine generate_pdf_params.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8366 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: dff11a1927e522b0c5ff0acb47da029ee6750ed5\u000a", "date" : "2017-02-25 21:19:05 +0000", "id" : "797509049869e44636489bd02d8d7359dd85ed0d", "msg" : "This is a bug fix for the Sun compiler. The variables pdf_params_zm and", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "da1e6e93f57c3b5937ce93743d13f2c8698fafe8", "timestamp" : 1488089851000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating the hydrometeor PDF code to set mu_hm_1 and\u000amu_hm_2 based on mu_thl_1 and mu_thl_2. This will help\u000aimprove the increase of thlp2 from evaporation of rain\u000anear ground in cases that use analytic microphysics or\u000aSILHS.\u000a\u000aThe results of this change are BIT_CHANGING for all\u000acases that use any type of microphysics.\u000a\u000aLarson Group Internal Trac System Reference: papers:ticket:14.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8368 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ec62851ec33aa701989b4a4cac6dee344a642277\u000a", "date" : "2017-02-26 06:17:31 +0000", "id" : "da1e6e93f57c3b5937ce93743d13f2c8698fafe8", "msg" : "I am updating the hydrometeor PDF code to set mu_hm_1 and", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "2849e9ec8d8be6daa3f5c9db5f17bf33290447f6", "timestamp" : 1488347866000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Running the Bitten tests.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8370 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6aaf5c5e07d2bc8e122b2a68f5d92bed5ae7bc78\u000a", "date" : "2017-03-01 05:57:46 +0000", "id" : "2849e9ec8d8be6daa3f5c9db5f17bf33290447f6", "msg" : "Running the Bitten tests.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "eb63cc3ecb36c7abf5b3dc60006f1285c707ffe1", "timestamp" : 1494005902000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I added some comments so that CLUBB-SILHS would be consistent with\u000athe CLUBB-SILHS overview document that I am writing.\u000a\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8375 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f3f8fc84aa3c36b96796c683052f3f443980e0a7\u000a", "date" : "2017-05-05 17:38:22 +0000", "id" : "eb63cc3ecb36c7abf5b3dc60006f1285c707ffe1", "msg" : "I added some comments so that CLUBB-SILHS would be consistent with", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "numerical_check.F90", "stats_zt_module.F90", "pdf_closure_module.F90", "pdf_parameter_module.F90", "stats_clubb_utilities.F90", "stats_variables.F90" ], "commitId" : "1bdf138739edb357345723bef5f76f60b0df026c", "timestamp" : 1500069477000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "As a first step, I changed all instances of rrtthl to corr_rt_thl_1.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8405 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 79fdfb7e6a2ee9170090af10d080d8d936a149c1\u000a", "date" : "2017-07-14 21:57:57 +0000", "id" : "1bdf138739edb357345723bef5f76f60b0df026c", "msg" : "As a first step, I changed all instances of rrtthl to corr_rt_thl_1.", "paths" : [ { "editType" : "edit", "file" : "pdf_parameter_module.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "numerical_check.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "stats_zt_module.F90", "numerical_check.F90", "pdf_closure_module.F90", "pdf_parameter_module.F90", "stats_clubb_utilities.F90", "stats_variables.F90" ], "commitId" : "2f64d7d1fad1935e490184a2f226e249b4dadeee", "timestamp" : 1500071690000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added corr_rt_thl_2 to the code to go along with corr_rt_thl_2.\u000a\u000aSince an additional stat has been added to output, this particular change\u000ais BIT_CHANGING. However, this is only for GrADS _zt output files. Results\u000ain GrADS _zm and _sfc output files remain the same.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8406 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b4b6c041f955df44b7e95fbcc72b4bfbfabf91a1\u000a", "date" : "2017-07-14 22:34:50 +0000", "id" : "2f64d7d1fad1935e490184a2f226e249b4dadeee", "msg" : "I have added corr_rt_thl_2 to the code to go along with corr_rt_thl_2.", "paths" : [ { "editType" : "edit", "file" : "pdf_parameter_module.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "numerical_check.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90", "pdf_parameter_module.F90", "advance_clubb_core_module.F90", "numerical_check.F90" ], "commitId" : "9e72781b4211e81e73b40cafe2fc4f0f0ad3a30d", "timestamp" : 1500529380000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added some code to add corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2\u000ato the pdf_parameter derived data type. The value of these variables is simply set\u000ato 0 for the ADG1 PDF. They have not yet been output to stats.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8407 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6a265cc291b093421e23178aaf0a2793a513fdbc\u000a", "date" : "2017-07-20 05:43:00 +0000", "id" : "9e72781b4211e81e73b40cafe2fc4f0f0ad3a30d", "msg" : "I have added some code to add corr_w_rt_1, corr_w_rt_2, corr_w_thl_1, and corr_w_thl_2", "paths" : [ { "editType" : "edit", "file" : "pdf_parameter_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "numerical_check.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "stats_clubb_utilities.F90", "stats_zt_module.F90" ], "commitId" : "5c7d2be0e9f62502f81ce75fe3741456dae750ed", "timestamp" : 1500601225000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added new statistics to the CLUBB _zt output files, specifically corr_w_rt_1, corr_w_rt_2,\u000acorr_w_thl_1, and corr_w_thl_2.\u000a\u000aThe results in GrADS _zt output files change, owing to additional statistics. This commit\u000ais BIT_CHANGING. Otherwise, all the other GrADS output files stay exactly the same.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8408 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 71c2743e87f125b0e60ccae83fc1fff07e69cb6f\u000a", "date" : "2017-07-21 01:40:25 +0000", "id" : "5c7d2be0e9f62502f81ce75fe3741456dae750ed", "msg" : "I added new statistics to the CLUBB _zt output files, specifically corr_w_rt_1, corr_w_rt_2,", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "d854c55ef50cfb617782f166fb066c43ceb8ada7", "timestamp" : 1501016894000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating the equations for wp2rtp, wp2thlp, wprtp2, and wpthlp2 to include\u000awithin-component correlations of w and rt or w and theta-l.\u000a\u000aI am also replacing the hardwired settng of corr_w_rt_1, corr_w_rt_2,\u000acorr_w_thl_1, and corr_w_thl_2 to 0 (for ADG1) with the equations that solve\u000afor these correlations. For the ADG1, the result of the equation is\u000awithin-component correlations that have a value of 0 --- well, within numerical\u000aroundoff error of 0 (such as 1.0e-14).\u000a\u000aSince this code change technically changes results, this commit is BIT_CHANGING.\u000aHowever, plotgen shows profiles exactly overlap for almost all cases. The\u000aultra-sensitive ARM 97 case is the most notable exception.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8409 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e5487001c112145b1f562684e41498d04ef27f89\u000a", "date" : "2017-07-25 21:08:14 +0000", "id" : "d854c55ef50cfb617782f166fb066c43ceb8ada7", "msg" : "I am updating the equations for wp2rtp, wp2thlp, wprtp2, and wpthlp2 to include", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_utilities.F90" ], "commitId" : "65c599a0a6b342524a4e151d6a5fe6b29f792af2", "timestamp" : 1501124070000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding a special function to calculate the within-component correlation of\u000aeta and variable x (such as w), which depends, in part, on the\u000awithin-component correlaton of rt and x and the within-component correlation of\u000atheta-l and x.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8410 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 7fb019f47f4446c226d298f7219d77628c879392\u000a", "date" : "2017-07-27 02:54:30 +0000", "id" : "65c599a0a6b342524a4e151d6a5fe6b29f792af2", "msg" : "I am adding a special function to calculate the within-component correlation of", "paths" : [ { "editType" : "edit", "file" : "pdf_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "ec0c789074314e3ce17bafe76ff0f03d46431f7c", "timestamp" : 1501134625000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added variables corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2\u000ato subroutine pdf_closure. They calculate the within-component correlations by\u000acalling utility functions in PDF utilities.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8411 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e9ca795e3b8d60784a00b76016f8b209c9a93203\u000a", "date" : "2017-07-27 05:50:25 +0000", "id" : "ec0c789074314e3ce17bafe76ff0f03d46431f7c", "msg" : "I added variables corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_parameter_module.F90", "pdf_closure_module.F90", "numerical_check.F90" ], "commitId" : "c5840a13dc0ebcb6ee34e88c8c56ba714373b312", "timestamp" : 1501709183000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 to type\u000apdf_parameter.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8412 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a43fc0230324a470f3d7ab7c3f1345b54994ad84\u000a", "date" : "2017-08-02 21:26:23 +0000", "id" : "c5840a13dc0ebcb6ee34e88c8c56ba714373b312", "msg" : "I am adding corr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 to type", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "pdf_parameter_module.F90" }, { "editType" : "edit", "file" : "numerical_check.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "setup_clubb_pdf_params.F90", "stats_zt_module.F90" ], "commitId" : "a1089add9c25d5324dde3dbd23e95e3b33821b08", "timestamp" : 1501714052000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Now that the PDF component correlations of w and chi, as well as w and eta,\u000awill be allowed to be something other than 0 when a new PDF is used, stats\u000aneeds to account for that.\u000a\u000aAlready in the code, corr_chi_eta_1 is the value calculated in PDF closure,\u000awhile corr_chi_eta_1_ca is the actual value used in the correlation array.\u000aThis depends on whether the calculated value or a prescribed value is used\u000ain the array. This code is now being mimicked for corr_w_chi_1, corr_w_chi_2,\u000acorr_w_eta_1, and corr_w_eta_2.\u000a\u000aThe first step is change the current stats output corr_w_chi_1 to\u000acorr_w_chi_1_ca, etc.\u000a\u000aThe results in GrADS *.dat output files from this revision are an exact match\u000ato the results in GrADS *.dat output files from the previous revision for all\u000acases. The GrADS *.ctl files differ because the stat names have changed.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8413 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8a0b4efb9a160adb315c099462bcc07dc5b9359e\u000a", "date" : "2017-08-02 22:47:32 +0000", "id" : "a1089add9c25d5324dde3dbd23e95e3b33821b08", "msg" : "Now that the PDF component correlations of w and chi, as well as w and eta,", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "stats_clubb_utilities.F90", "stats_zt_module.F90" ], "commitId" : "ab1a600e7f1f56ee0e69d72ca22eaba8e0e811f6", "timestamp" : 1501716478000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding statistical output for corr_w_chi_1, corr_w_chi_2, corr_w_eta_1,\u000aand corr_w_eta_2.\u000a\u000aThe results in GrADS output files differ because of the additional statistics,\u000aso this revision is BIT_CHANGING. However, this is only for the *_zt output\u000afiles. The results in GrADS *_zm and *_sfc output files from this revision are\u000aand exact match to the results in GrADS *_zm and *_sfc files from the previous\u000arevision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8414 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 309a5fed35104c5422cc4ad24efc8c0c241ad858\u000a", "date" : "2017-08-02 23:27:58 +0000", "id" : "ab1a600e7f1f56ee0e69d72ca22eaba8e0e811f6", "msg" : "I am adding statistical output for corr_w_chi_1, corr_w_chi_2, corr_w_eta_1,", "paths" : [ { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90", "setup_clubb_pdf_params.F90", "clubb_api_module.F90", "corr_varnce_module.F90" ], "commitId" : "8ca31ccec167f25a7f32ddbf3ca7b54d3a823032", "timestamp" : 1501719775000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am changing the name of the flag l_fix_chi_eta_correlations to\u000al_fix_w_chi_eta_correlations. This is because code will need to be introduced\u000ato fix the PDF component correlations of w and chi and w and eta for SILHS.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8415 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 32b0f55832325418462852f9fc611c2ed25a7b2c\u000a", "date" : "2017-08-03 00:22:55 +0000", "id" : "8ca31ccec167f25a7f32ddbf3ca7b54d3a823032", "msg" : "I am changing the name of the flag l_fix_chi_eta_correlations to", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "corr_varnce_module.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90", "advance_clubb_core_module.F90", "model_flags.F90", "clubb_api_module.F90" ], "commitId" : "5779b395cf8ca60cdd2b751d238da3b2c4542129", "timestamp" : 1501828308000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "The two component normal (double Gaussian) PDF used by CLUBB will now be\u000aselected by an integer index, rather than multiple logical flags. The PDF\u000atype used by CLUBB is called iiPDF_type. The value of iiPDF_type can be set to\u000aone of the following:\u000a\u000aiiPDF_ADG1 = 1: ADG1 PDF (default)\u000aiiPDF_ADG2 = 2: ADG2 PDF (can only be used with input fields)\u000aiiPDF_3D_Luhar = 3: 3D Luhar PDF (can only be used with input fields).\u000a\u000aAdditional PDF types will be added in the near future.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:770.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8416 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9b7157d59487b308c22704bc6f37dc39fb1acb0b\u000a", "date" : "2017-08-04 06:31:48 +0000", "id" : "5779b395cf8ca60cdd2b751d238da3b2c4542129", "msg" : "The two component normal (double Gaussian) PDF used by CLUBB will now be", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "8edb8709cbdb95f0e8ae17bf23a57d9863c9d77d", "timestamp" : 1501887618000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I moved the checking of the options for the PDF call placement to subroutine\u000asetup_clubb_core, which is the same place where the options for the PDF type\u000aare checked.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8418 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 7d2573b3d770b6f6f0b3a899a49f2ea17978e381\u000a", "date" : "2017-08-04 23:00:18 +0000", "id" : "8edb8709cbdb95f0e8ae17bf23a57d9863c9d77d", "msg" : "I moved the checking of the options for the PDF call placement to subroutine", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "26a1ae6570d7ca0c695eab9bd90bd6e66bb6f313", "timestamp" : 1502394562000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am altering setup PDF parameters to be able to read in the values of\u000acorr_w_chi_1, corr_w_chi_2, corr_w_eta_1, and corr_w_eta_2 calculated by\u000aCLUBB's PDF closure when l_fix_w_chi_eta_correlations is turned off.\u000a\u000aSince RICO and RICO SILHS have l_fix_w_chi_eta_correlations turned off by\u000adefault, and since the values of corr_w_chi_1 are within numerical roundoff\u000aof 0, but are not exactly 0 (since they aren't hardwired to 0 anymore in this\u000asituation), the GrADS output results for the RICO cases are technically\u000aBIT_CHANGING. However, for all other cases, the results in GrADS output files\u000afrom this revison are an exact match to the results in GrADS output files from\u000athe previous revison.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8420 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f78b2d5236cd3ee28677ab616d9a3189fb3e1cde\u000a", "date" : "2017-08-10 19:49:22 +0000", "id" : "26a1ae6570d7ca0c695eab9bd90bd6e66bb6f313", "msg" : "I am altering setup PDF parameters to be able to read in the values of", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "c07ab5ccd5a6e475db0719d161e28b3928b9331c", "timestamp" : 1502937779000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding the new file new_pdf.F90 to the CLUBB core directory. So far, it\u000abasically contains a few comments.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8424 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 907fafe42349a2f36c433b92f7e96fd9206a182f\u000a", "date" : "2017-08-17 02:42:59 +0000", "id" : "c07ab5ccd5a6e475db0719d161e28b3928b9331c", "msg" : "I am adding the new file new_pdf.F90 to the CLUBB core directory. So far, it", "paths" : [ { "editType" : "add", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "ce75f5ce98726c064acad7ff3b291699db00bf2e", "timestamp" : 1503201511000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding a large amount of code to the new PDF. I have filled in the driver\u000asubroutine, and I have added functions and subroutines for mixture fraction,\u000athe PDF component means and standard deviations for the \"setter\" variable, and\u000athe PDF component means and standard deviations for the \"responder\" variables.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8427 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 014bdf1009c7ade517a2a13b457a8d0dfcbc915e\u000a", "date" : "2017-08-20 03:58:31 +0000", "id" : "ce75f5ce98726c064acad7ff3b291699db00bf2e", "msg" : "I am adding a large amount of code to the new PDF. I have filled in the driver", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "85308f4beb5f735c34d9d8e875a722134919d6a7", "timestamp" : 1504037851000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding code to the new PDF that calculates the minimum and maximum\u000aallowable values of F_x for a responding variable.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8431 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 5e00f9da2367b8a8c40031b8d2f9817458ef1533\u000a", "date" : "2017-08-29 20:17:31 +0000", "id" : "85308f4beb5f735c34d9d8e875a722134919d6a7", "msg" : "I am adding code to the new PDF that calculates the minimum and maximum", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "11d7a9d84753ae52c284a70bf29849bc744ed9c4", "timestamp" : 1504043430000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a new iiPDF entry for the new PDF, and I neatened some of the current\u000acode.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8432 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8f478d6814c6a69b3677af8309f4a145fe85090e\u000a", "date" : "2017-08-29 21:50:30 +0000", "id" : "11d7a9d84753ae52c284a70bf29849bc744ed9c4", "msg" : "I added a new iiPDF entry for the new PDF, and I neatened some of the current", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "7ae91ab288665049bbef456846c14561ab3ac108", "timestamp" : 1504044268000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added an option to call the new PDF from subroutine pdf_closure.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8433 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 208d82318173789a7c7d6e09277832b2d5fb39f4\u000a", "date" : "2017-08-29 22:04:28 +0000", "id" : "7ae91ab288665049bbef456846c14561ab3ac108", "msg" : "I added an option to call the new PDF from subroutine pdf_closure.", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "df45d687af4c60ee9f4d8dc3ed58df880c4e90f1", "timestamp" : 1504045491000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I had to add checking for the new PDF so someone does not try to run it\u000ainteractively until it is ready for that.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8435 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ee48cae5f28e2184bf87cd80351fc1987fddb28d\u000a", "date" : "2017-08-29 22:24:51 +0000", "id" : "df45d687af4c60ee9f4d8dc3ed58df880c4e90f1", "msg" : "I had to add checking for the new PDF so someone does not try to run it", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "pdf_closure_module.F90" ], "commitId" : "250072e68b4e2047771089a721f91f5648f686ee", "timestamp" : 1504104485000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I made a couple changes to (1) initialize two variables that aren't used by the\u000anew PDF (alpha_rt and alpha_thl) to default values in order to avoid them being\u000aset to NaN and causing a runtime error, and (2) calculate skewness from thlp3\u000aand thlp2 (or rtp3 and rtp2) for the new PDF.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8437 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 7fb0580861183c3d696238bd7168d1cfbc97bcd3\u000a", "date" : "2017-08-30 14:48:05 +0000", "id" : "250072e68b4e2047771089a721f91f5648f686ee", "msg" : "I made a couple changes to (1) initialize two variables that aren't used by the", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "122a9c185ebc5211667fef6f3500c821a5036614", "timestamp" : 1504114265000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a conditional to the subroutine that sets the responder parameters.\u000aWhen both Skx and F_x are exactly 0 (and the only Skx that can be represented\u000awhen F_x is 0 is a Skx of 0), a couple of equations end up with an undefined\u000a0/0. In this scenario, the PDF is converging to a single Gaussian. When both\u000aSkx and F_x have a value of 0, the PDF of responder variable x is now defined to\u000abe a single Gaussian (which is the shape it was converging to).\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8439 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 816a6b607a2d470e1e21faaba2cae46905211943\u000a", "date" : "2017-08-30 17:31:05 +0000", "id" : "122a9c185ebc5211667fef6f3500c821a5036614", "msg" : "I added a conditional to the subroutine that sets the responder parameters.", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "7760911823e32928409cbe64bf70121141891a34", "timestamp" : 1504332693000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added the beginnings of a new unit test for the PDF parameters.\u000aCurrently, it tests the new PDF, but only the \"setter\" variable. It checks\u000abased on a variety of input values and loops over many different tunable\u000aparameter values. Once mu_w_1, mu_w_2, sigma_w_1, sigma_w_2, and mixt_frac have\u000abeen calculated, the values of wm, wp2, wp3, and Skw are recalculated using PDF\u000aparameters and compared to their original values. Additionally, the test also\u000achecks that sigma_w_1 >= 0, sigma_w_2 >= 0, and 0 < mixt_frac < 1.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8441 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 116cd507bfb549e1fd9678dc1207a98de3d8bb52\u000a", "date" : "2017-09-02 06:11:33 +0000", "id" : "7760911823e32928409cbe64bf70121141891a34", "msg" : "I have added the beginnings of a new unit test for the PDF parameters.", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "82a034dfa874b3e850244853312a754392e823bd", "timestamp" : 1504736013000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have updated the PDF parameter unit test to make a call to the full PDF (for\u000athe new PDF).\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8442 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b3c8936e8d546569a1877900dc53dcc7cffdb9a4\u000a", "date" : "2017-09-06 22:13:33 +0000", "id" : "82a034dfa874b3e850244853312a754392e823bd", "msg" : "I have updated the PDF parameter unit test to make a call to the full PDF (for", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "8e609886fe423733d4568c845d91d3847cc80874", "timestamp" : 1504766042000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added a feature to the PDF parameter unit tests which allows the user\u000ato declare which PDF is being tested.\u000a\u000aWith this, I have added some code to test the \"setter\" variable for ADG1 (which\u000ais always w). The test loops over incremental values of sigma_sqd_w for each\u000aof the PDF input parameter sets, calculates the PDF component means, component\u000avariances, and mixture fraction, and then recalculates wm, wp2, wp3, and Skw.\u000a\u000aI still have to add code to test the full PDF for ADG1.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8443 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 645ed2b73204952f8d3cc9193f516576d13ef6ae\u000a", "date" : "2017-09-07 06:34:02 +0000", "id" : "8e609886fe423733d4568c845d91d3847cc80874", "msg" : "I have added a feature to the PDF parameter unit tests which allows the user", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "df8d5977e025ede94c6b058b97856c0bed8cb326", "timestamp" : 1504842829000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "In the setter variable description and subprograms, I made a name change from\u000amu_w_1, etc., to mu_x_1, etc. This was done because other variables besides w\u000amight be used as the setter variable.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8444 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 04ecfc94c1d512f4815f332ea0d6271b413b7394\u000a", "date" : "2017-09-08 03:53:49 +0000", "id" : "df8d5977e025ede94c6b058b97856c0bed8cb326", "msg" : "In the setter variable description and subprograms, I made a name change from", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "f191465a17f26341952b058689a1d428c0a4bfdd", "timestamp" : 1504846771000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have updated the method of calculating the setter variable so that mu_x_1\u000aand mu_x_2 are set based on the sign of . This is described in the back\u000apages of the derivation of the method for the setting variable. In a nutshell,\u000asqrt(F_x) is replaced by sqrt(F_x) * sgn( ) in the entire equation set.\u000aMost equations use F_x (or an integer power of F_x). Even after the\u000areplacement, F_x remains F_x (because the square, etc., of sgn( ) is\u000aalways 1). The only equations that are altered are the equations for mu_x_1\u000aand mu_x_2. When the sign of is positive, mu_x_1 >= mu_x_2. Otherwise,\u000awhen the sign of is negative, mu_x_1 <= mu_x_2. When variable x is w,\u000athe sign of wp2 is always postive, and mu_w_1 >= mu_w_2, following previous\u000aconventions. This change allows for things such as mu_thl_1 <= mu_thl_2 when\u000a < 0 in the event that theta-l is the setting variable.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8445 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 733f5f36dad88f0ecaef746b8e01c4ffbff39ef5\u000a", "date" : "2017-09-08 04:59:31 +0000", "id" : "f191465a17f26341952b058689a1d428c0a4bfdd", "msg" : "I have updated the method of calculating the setter variable so that mu_x_1", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "2dcf994553dc649bcd496308117a8b6a97113d4b", "timestamp" : 1504933930000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added primarily some more documentation and notes.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8446 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e7b3f11bef3737730d2d558cff2e12e27c75b139\u000a", "date" : "2017-09-09 05:12:10 +0000", "id" : "2dcf994553dc649bcd496308117a8b6a97113d4b", "msg" : "I added primarily some more documentation and notes.", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "e81daa5f055f4c99b63bd444bce743bd8f92c897", "timestamp" : 1505141754000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added some more comments documenting the code.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8447 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 08c4a3ab5eebcd45cefffb401c35386c88a872b6\u000a", "date" : "2017-09-11 14:55:54 +0000", "id" : "e81daa5f055f4c99b63bd444bce743bd8f92c897", "msg" : "I added some more comments documenting the code.", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90", "pdf_closure_module.F90", "constants_clubb.F90" ], "commitId" : "46632b4b96b05fb8079924794420043194c5ee01", "timestamp" : 1505152039000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I got rid of some of the expressions that a script might try to flag as\u000a\"magic numbers\" by doing something that I started a while ago --- declaring\u000athose numbers as constant parameters in the code.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8448 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e99a65715204e9382dfb6357ac1a76ebf4517581\u000a", "date" : "2017-09-11 17:47:19 +0000", "id" : "46632b4b96b05fb8079924794420043194c5ee01", "msg" : "I got rid of some of the expressions that a script might try to flag as", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "constants_clubb.F90" }, { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "b7a9edf6cdf37b4d301a5426e8f7f787fac26ccc", "timestamp" : 1505255733000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added much more documentation about the responder variable. Specifically,\u000amuch of the new documentation is about how the limits of F_x are calculated.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8449 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: a8d6f95d883a38bf345324b717d3f1955d5688d5\u000a", "date" : "2017-09-12 22:35:33 +0000", "id" : "b7a9edf6cdf37b4d301a5426e8f7f787fac26ccc", "msg" : "I added much more documentation about the responder variable. Specifically,", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "original_pdf.F90" ], "commitId" : "96dd4a8d1759e5ed899571e92df95527e3995d87", "timestamp" : 1505371440000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding the new file, original_pdf.F90, as the new home for the ADG1, ADG2,\u000aand 3D Luhar PDF closures. As of right now, the original code still remains in\u000aPDF closure, and this code is not currently interface with any part of CLUBB.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8450 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4d83bf47bf1260f79b1584952743991e1d4af68a\u000a", "date" : "2017-09-14 06:44:00 +0000", "id" : "96dd4a8d1759e5ed899571e92df95527e3995d87", "msg" : "I am adding the new file, original_pdf.F90, as the new home for the ADG1, ADG2,", "paths" : [ { "editType" : "add", "file" : "original_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "original_pdf.F90", "pdf_closure_module.F90" ], "commitId" : "e45432703a561cdc6e81c106568c3cab71b56bba", "timestamp" : 1505406315000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have now switched the PDF closure code over to calling the code that had been\u000amoved to original_pdf.F90 in r8450. The code that remained in PDF closure has\u000anow been deleted.\u000a\u000aI have also moved the code to calculate the PDF parameters for passive scalars\u000ato inside the driver subroutines for ADG1 and ADG2.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8451 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 5b68933fc999bc8258625b0d9a3fd8c1b3128d46\u000a", "date" : "2017-09-14 16:25:15 +0000", "id" : "e45432703a561cdc6e81c106568c3cab71b56bba", "msg" : "I have now switched the PDF closure code over to calling the code that had been", "paths" : [ { "editType" : "edit", "file" : "original_pdf.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "1a2c52b7d840dea49e23776c4d9591929663b5bc", "timestamp" : 1505617261000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the documentation in the code comments for the setter method and\u000ageneralized the mixture fraction code so that any variable, x, can be used as\u000athe setter variable, not just w.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8453 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 319e3ff46c48a3a9efea5d7e7b977ddeb203ee4b\u000a", "date" : "2017-09-17 03:01:01 +0000", "id" : "1a2c52b7d840dea49e23776c4d9591929663b5bc", "msg" : "I updated the documentation in the code comments for the setter method and", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "1b93dd6436c3a08431325786bfc77e3a0ed10c5f", "timestamp" : 1505617722000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a comment.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8454 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 476d92833ba72680bb61cee9e1a5846e2df19a53\u000a", "date" : "2017-09-17 03:08:42 +0000", "id" : "1b93dd6436c3a08431325786bfc77e3a0ed10c5f", "msg" : "I added a comment.", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_utilities.F90", "new_pdf.F90", "pdf_closure_module.F90" ], "commitId" : "9638daee00cbed38db5adb3d64ec7cdba43206c5", "timestamp" : 1505856406000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a new function, calc_comp_corrs_binormal, to pdf_utilities.F90. This\u000afunction calculates the PDF component correlations of two variables that are\u000aboth distributed as part of a two component normal distribution. The code is\u000aa copy of code that was previously found in subroutine pdf_closure. Now,\u000apdf_closure calls this function multiple times over, rather than repeating the\u000asame code multiple times in a row.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8455 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ee93f6bfb3c984fdec7a851189dfc4c502aae5c0\u000a", "date" : "2017-09-19 21:26:46 +0000", "id" : "9638daee00cbed38db5adb3d64ec7cdba43206c5", "msg" : "I added a new function, calc_comp_corrs_binormal, to pdf_utilities.F90. This", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "pdf_utilities.F90" }, { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "512906b3f915322181776bee28aa6abd4bb7703a", "timestamp" : 1505887818000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added some more descriptive comments and a new function that calculates the\u000acoefficient of the wp4 equation (for implicit time stepping), where:\u000a\u000awp4 = coef_wp4_implicit * wp2^2^\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8456 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4336f01d26892857c38991297e10d652737d4754\u000a", "date" : "2017-09-20 06:10:18 +0000", "id" : "512906b3f915322181776bee28aa6abd4bb7703a", "msg" : "I added some more descriptive comments and a new function that calculates the", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "376bd21e269d7d0c874d2dc5fb12d05f99d8794f", "timestamp" : 1505965326000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the code so that coef_sigma_x_1_sqd and coef_sigma_x_2_sqd are passed\u000aout of the subroutine that calculates the PDF parameters for the setter\u000avariable.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8457 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: dd22397b49b2096afb51cdefa80f672f93bc5c50\u000a", "date" : "2017-09-21 03:42:06 +0000", "id" : "376bd21e269d7d0c874d2dc5fb12d05f99d8794f", "msg" : "I updated the code so that coef_sigma_x_1_sqd and coef_sigma_x_2_sqd are passed", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "ec87600ee30f3e74fb2037e0166318973b4b5416", "timestamp" : 1505965630000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I fixed a mistake.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8458 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 56c95f8615f28064b8a74c51c26d791616eb2cb4\u000a", "date" : "2017-09-21 03:47:10 +0000", "id" : "ec87600ee30f3e74fb2037e0166318973b4b5416", "msg" : "I fixed a mistake.", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "060c2e9f5a165d0db494d1fa22ead556ef6a717d", "timestamp" : 1506056092000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added code to call the new function that calculates wp4 implicitly from\u000athe unit testing code. I also added some more comments.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8459 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 98fe8bf67b016720bdc77236c765ea80c681ea57\u000a", "date" : "2017-09-22 04:54:52 +0000", "id" : "060c2e9f5a165d0db494d1fa22ead556ef6a717d", "msg" : "I have added code to call the new function that calculates wp4 implicitly from", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "a5753ccef073f127ffd2a0c7ea4fbd9026d8ebd5", "timestamp" : 1506058934000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I moved the calculations of wp2xp (wp2rtp and wp2thlp), wp4, and wpxp2 (wprtp2\u000aand wpthlp2) into their own functions.\u000a\u000aAt most timesteps, results are exactly the same. On occassion, very, very\u000asmall discrepancies between the previous version and the new revision show up.\u000aThe calculations occur with everything in the exact same order as they were\u000aperformed in previously. They only thing different is passing code out of\u000afunctions and back to the main program. This odd behavior makes this code\u000atechnically BIT_CHANGING.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8460 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 79030bc1913e95ecb36bd613713658d726944188\u000a", "date" : "2017-09-22 05:42:14 +0000", "id" : "a5753ccef073f127ffd2a0c7ea4fbd9026d8ebd5", "msg" : "I moved the calculations of wp2xp (wp2rtp and wp2thlp), wp4, and wpxp2 (wprtp2", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "5384d9d0de5cbfa54786e0022ac45d03923528bb", "timestamp" : 1506234447000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added another function to the new PDF. This function helps to calculate\u000awpxp2 implicitly as part of the xp2 predictive equation.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8462 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 33547d862fbf9fecded1db6f1b8f0d4c27db176d\u000a", "date" : "2017-09-24 06:27:27 +0000", "id" : "5384d9d0de5cbfa54786e0022ac45d03923528bb", "msg" : "I added another function to the new PDF. This function helps to calculate", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "a104dde34400e73f7996e9b0528415d6529defc6", "timestamp" : 1506460821000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a special case for the wpxp2 implicit code.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8463 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 5d60384202b85e0e30d3b33c1ec996550e5e485f\u000a", "date" : "2017-09-26 21:20:21 +0000", "id" : "a104dde34400e73f7996e9b0528415d6529defc6", "msg" : "I added a special case for the wpxp2 implicit code.", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "b20f067da35fa0881ebe6ca019282953548d637d", "timestamp" : 1506464947000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Back in clubb:r8409, the PDF component correlations of w and rt and w and\u000atheta-l were calculated rather than assumed to be 0. For ADG1 and ADG2, the\u000aresulting values of the correlations were within numerical roundoff error of 0\u000a(for example, 1.0e-14). However, in the interest of trying to keep results\u000ain-line as much as possible with historical results, this commitment introduces\u000acode to simply set these PDF component correlations to 0 (and avoid the\u000acalculation) when the chosen PDF is ADG1 or ADG2. Otherwise, when other PDFs\u000aare used, the correlations will be calculated. This commitment is BIT_CHANGING.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8464 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 03e97996f9e5aace3643cf8da3a7019b8f864ed1\u000a", "date" : "2017-09-26 22:29:07 +0000", "id" : "b20f067da35fa0881ebe6ca019282953548d637d", "msg" : "Back in clubb:r8409, the PDF component correlations of w and rt and w and", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "315aa47cfb4f0803b723148723f70a5771b63444", "timestamp" : 1506568243000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a subroutine that calculates the implicit and explicit portions of the\u000awp2xp equation, where:\u000a\u000awp2xp = coef_wp2xp_implicit * wpxp + coef_wp2xp_explicit.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8465 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e6e7a3c61a7ea3f44564e4ab82f73facba6c7115\u000a", "date" : "2017-09-28 03:10:43 +0000", "id" : "315aa47cfb4f0803b723148723f70a5771b63444", "msg" : "I added a subroutine that calculates the implicit and explicit portions of the", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90", "original_pdf.F90", "adg1_adg2_3d_luhar_pdf.F90" ], "commitId" : "682b8167989760c5e3bdb5fe3112632a48098801", "timestamp" : 1506568869000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I renamed original_pdf.F90 as adg1_adg2_3d_luhar_pdf.F90.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8466 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ea939d307f723c18aba6dff8ef2a0c739263e2a0\u000a", "date" : "2017-09-28 03:21:09 +0000", "id" : "682b8167989760c5e3bdb5fe3112632a48098801", "msg" : "I renamed original_pdf.F90 as adg1_adg2_3d_luhar_pdf.F90.", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "add", "file" : "adg1_adg2_3d_luhar_pdf.F90" }, { "editType" : "delete", "file" : "original_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90", "advance_clubb_core_module.F90", "stats_variables.F90", "new_pdf.F90", "stats_zt_module.F90" ], "commitId" : "16b439a231f958d7434c9945fda5b0a33f565956", "timestamp" : 1506643797000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added statistical output for F_w, F_rt, F_thl, min_F_w, max_F_w, min_F_rt,\u000amax_F_rt, min_F_thl, and max_F_thl.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases for all\u000aoutput files besides the *_zt.dat output files. Owing to the new stats, the\u000a*_zt.dat output files make this revision BIT_CHANGING.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8467 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 2243298ace53299c9e0222adf2cd233026fe6268\u000a", "date" : "2017-09-29 00:09:57 +0000", "id" : "16b439a231f958d7434c9945fda5b0a33f565956", "msg" : "I added statistical output for F_w, F_rt, F_thl, min_F_w, max_F_w, min_F_rt,", "paths" : [ { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "new_pdf.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90", "new_pdf_main.F90", "pdf_closure_module.F90" ], "commitId" : "14cd9184faf1cd20250b7dafa64a794f0097225b", "timestamp" : 1506664323000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I split the new PDF into two files. I added a new file that currently houses\u000athe driver. The core functions and subroutines of the new PDF remain in the\u000aoriginal file.\u000a\u000aThe Happy Birthday to me CLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8469 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 68224186fc824f10965e7f887d79f6a3b6d414d4\u000a", "date" : "2017-09-29 05:52:03 +0000", "id" : "14cd9184faf1cd20250b7dafa64a794f0097225b", "msg" : "I split the new PDF into two files. I added a new file that currently houses", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" }, { "editType" : "add", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "saturation.F90" ], "commitId" : "7fa72c493db849383093c4b14b73e1e5567b47c6", "timestamp" : 1507128630000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I clipped temperature within the Goff-Gratch functions for saturation over liquid and ice.\u000aThe goal was to avoid the creation of NaNs that caused CAM to crash over the Himalayas.\u000aThe result of applying a minimal threshold on temperature is to set saturation to the same small \u000avalue in all cold areas.\u000a\u000aTo test the code change, I ran the priority cases and determined that the new code\u000aproduces bin-diff identical results for these cases. That just means that these cases are not cold. \u000aHowever, the code change might increase\u000asaturation in cold areas in CAM, thereby diminishing condensation in the upper atmosphere.\u000aIt would be prudent to check a WACCM simulation for degradation. If there is degradation,\u000athe minimum temperatures could be set to smaller values.\u000a\u000aFor cam:ticket:98.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8470 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6c2c6fc13a7673bcdf5da93bde0a350086383b4e\u000a", "date" : "2017-10-04 14:50:30 +0000", "id" : "7fa72c493db849383093c4b14b73e1e5567b47c6", "msg" : "I clipped temperature within the Goff-Gratch functions for saturation over liquid and ice.", "paths" : [ { "editType" : "edit", "file" : "saturation.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "2056a9a395e6d8d41d25f58d5e65da97dc4f46bf", "timestamp" : 1507164340000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I initialized some output variables in order to prevent a runtime error.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8472 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 3047483573f92b8e310d3f1529a9870a3bdf8446\u000a", "date" : "2017-10-05 00:45:40 +0000", "id" : "2056a9a395e6d8d41d25f58d5e65da97dc4f46bf", "msg" : "I initialized some output variables in order to prevent a runtime error.", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf_main.F90" ], "commitId" : "d6bbb281bffd128da2be6a16fa6275df12f972f3", "timestamp" : 1507177058000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I made a sub-driver level subroutine for the calculations necessary for a\u000aresponder variable.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8473 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9b930c433b4f7c0162637737a57bd4b5dd51c663\u000a", "date" : "2017-10-05 04:17:38 +0000", "id" : "d6bbb281bffd128da2be6a16fa6275df12f972f3", "msg" : "I made a sub-driver level subroutine for the calculations necessary for a", "paths" : [ { "editType" : "edit", "file" : "new_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90", "new_pdf_main.F90" ], "commitId" : "09094b52ced98602026e3ba4b157d17c07c46b6e", "timestamp" : 1507338548000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added code to allow the variable (of w, rt, or theta-l) with the greatest\u000amagnitude of skewness be the setter variable (the variable that sets the\u000amixture fraction).\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8476 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 5c0be9f8b54edea4f614fe27d7bdcbabf21071d9\u000a", "date" : "2017-10-07 01:09:08 +0000", "id" : "09094b52ced98602026e3ba4b157d17c07c46b6e", "msg" : "I added code to allow the variable (of w, rt, or theta-l) with the greatest", "paths" : [ { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf_main.F90" ], "commitId" : "b8df0b0f7f07bbafe999455169a9e03c928f7b74", "timestamp" : 1507356781000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added calls to the functions and subroutines that calculate the implicit and\u000aexplicit components of equations for wp4, wpxp2, and wp2xp.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8477 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: bd5eb61264aed108784e8a104833036e2737d08d\u000a", "date" : "2017-10-07 06:13:01 +0000", "id" : "b8df0b0f7f07bbafe999455169a9e03c928f7b74", "msg" : "I added calls to the functions and subroutines that calculate the implicit and", "paths" : [ { "editType" : "edit", "file" : "new_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90", "new_pdf_main.F90" ], "commitId" : "796393862523d0e2dc6dcd049937db3fc8702b86", "timestamp" : 1508011950000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I changed coef_wp2xp_explicit (coef_wp2rtp_explicit and coef_wp2thlp_explicit)\u000ato term_wp2xp_explicit (term_wp2rtp_explicit and term_wp2thlp_explicit) because\u000a\"term\" is a more accurate description here than \"coef\".\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8480 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 3518be4233b5b02e269e2f3d65518d5006cc64ee\u000a", "date" : "2017-10-14 20:12:30 +0000", "id" : "796393862523d0e2dc6dcd049937db3fc8702b86", "msg" : "I changed coef_wp2xp_explicit (coef_wp2rtp_explicit and coef_wp2thlp_explicit)", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" }, { "editType" : "edit", "file" : "new_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_tsdadg_pdf.F90", "pdf_closure_module.F90" ], "commitId" : "58cd28c513082639da7ed8a8c98ea851cfd53ce9", "timestamp" : 1508023017000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding a new file for the new trivariate skewness-dependent analaytic\u000adouble Gaussian (TSDADG) PDF. I have added an interface in the unit tests,\u000aalthough the standard tests aren't conducted yet.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8481 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f6b6b4d8826565e3a7efe3f7b0ad3004d67fd74b\u000a", "date" : "2017-10-14 23:16:57 +0000", "id" : "58cd28c513082639da7ed8a8c98ea851cfd53ce9", "msg" : "I am adding a new file for the new trivariate skewness-dependent analaytic", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "add", "file" : "new_tsdadg_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_tsdadg_pdf.F90" ], "commitId" : "628c9ccf8a8ec694e55e2a305f72feadc5fc3134", "timestamp" : 1508296514000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I fixed a bug in the new Trivariate skewness-dependent analytic double Gaussian\u000aPDF.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8482 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 2bbab551f1c16a8aacee8191faf4e6fe9f078a03\u000a", "date" : "2017-10-18 03:15:14 +0000", "id" : "628c9ccf8a8ec694e55e2a305f72feadc5fc3134", "msg" : "I fixed a bug in the new Trivariate skewness-dependent analytic double Gaussian", "paths" : [ { "editType" : "edit", "file" : "new_tsdadg_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_tsdadg_pdf.F90" ], "commitId" : "514ef09cc3bbf7f44f4073b9ac4cdbcbdcf760f1", "timestamp" : 1508302674000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "In order for the TSDADG PDF to work correctly, when Skx * sgn( ) >= 0,\u000al_x_1 > 2/3 and 0 < l_x_2 < 1. However, when Skx * sgn( ) < 0, the\u000alimits need to be reversed.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8483 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 430ba9fb82f4868373f7d7b04e9f578d7d2a7aaa\u000a", "date" : "2017-10-18 04:57:54 +0000", "id" : "514ef09cc3bbf7f44f4073b9ac4cdbcbdcf760f1", "msg" : "In order for the TSDADG PDF to work correctly, when Skx * sgn( ) >= 0,", "paths" : [ { "editType" : "edit", "file" : "new_tsdadg_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90", "adg1_adg2_3d_luhar_pdf.F90" ], "commitId" : "1be60070880272802ecd85639370eaaa7130eead", "timestamp" : 1508884727000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "In order to clarify coding in CLUBB, I am moving a block of code that is\u000aspecific to ADG1 and ADG2 to inside their driver subroutines, rather than keep\u000ait outside the driver subroutines, in subroutine pdf_closure, where it is more\u000aconfusing to someone trying to understand the flow of the code.\u000a\u000aI also added the full PDF unit test for ADG1.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8484 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: dcefdbe88476adfa5843797ca9b175f0532ba91d\u000a", "date" : "2017-10-24 22:38:47 +0000", "id" : "1be60070880272802ecd85639370eaaa7130eead", "msg" : "In order to clarify coding in CLUBB, I am moving a block of code that is", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "adg1_adg2_3d_luhar_pdf.F90" ], "commitId" : "284816e2267c454cec10b226e2a9e4f5beed0479", "timestamp" : 1509086030000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am fixing a bug where rtp2 and thlp2 (and sclrp2) were not preserved when\u000awp2 became very small. This bug is being fixed by treating the rtp2, thlp2,\u000aand sclrp2 distributions as single Gaussians in this limit.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:809.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8485 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6fc49c6d8ff3e053530b7120b4085ec62f6b1c3c\u000a", "date" : "2017-10-27 06:33:50 +0000", "id" : "284816e2267c454cec10b226e2a9e4f5beed0479", "msg" : "I am fixing a bug where rtp2 and thlp2 (and sclrp2) were not preserved when", "paths" : [ { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_tsdadg_pdf.F90" ], "commitId" : "f254c056660b61f160ad0ddb4add793c7fb6cedb", "timestamp" : 1509086289000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the TSDADG PDF by adding the responding variable description, the\u000aresponding variable subroutine, and the driver subroutine.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8486 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 5aee19d916b7c32862b399d9be7cf52aa8cc95e9\u000a", "date" : "2017-10-27 06:38:09 +0000", "id" : "f254c056660b61f160ad0ddb4add793c7fb6cedb", "msg" : "I updated the TSDADG PDF by adding the responding variable description, the", "paths" : [ { "editType" : "edit", "file" : "new_tsdadg_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "8c5f2d26747d7b6a9fbd65eae0ce0a4dc8d6fb24", "timestamp" : 1509142043000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "When ADG1 or ADG2 are not used, we have to set alpha_rt, alpha_thl, and\u000aalpha_sclr to values (their default values) in order to avoid a runtime error\u000afrom the Oracle compiler. 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pdf_closure.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8489 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 47b687afb77aba9f3ad508722183a92a76cafff7\u000a", "date" : "2017-10-27 22:43:44 +0000", "id" : "82e4512cd314dd9167d6fdf34c1c0131f534bae4", "msg" : "I am calling the new TSDADG PDF from subroutine pdf_closure.", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_tsdadg_pdf.F90" ], "commitId" : "9e30e75783f5497150bf902e5ad196bf0c664444", "timestamp" : 1509146193000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Clarity changes to the new TSDADG PDF.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8490 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"author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I changed the URL references to the CLUBB-SILHS overview document.\u000aInstead of pointing to the larson-group.com webpage,\u000athey now point to arxiv.org. \u000aThe shorter URL forestalls error messages from the CLUBB standards script.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8501 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9a8b38e22f389eff1c4a482ad5b599746d904ca5\u000a", "date" : "2017-11-13 14:47:22 +0000", "id" : "10430950c7c61a6d3a595323d24a1307aab1a057", "msg" : "I changed the URL references to the CLUBB-SILHS overview document.", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "grid_class.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : 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answers bit for bit identical.\u000a\u000aFor clubb:ticket:791.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8515 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 1f56ceb1efb1b3d32e2fe232bdfa180a952e1aaf\u000a", "date" : "2017-12-12 17:26:15 +0000", "id" : "b9d643f8efaabb8279bdb89230899dc95569bd32", "msg" : "I added an option to incorporate the buoyancy term into CLUBB's eddy diffusivity for momentum.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "7dbb97784343b514c33d7f8b85578d0af7b9cb2d", "timestamp" : 1513100152000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I added c_K10 as a tuning parameter in front of the new momentum eddy diffusivity.\u000aAgain, the results 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They are now set\u000aas a constant interpolation between min_F_x and max_F_x (where x is rt or thl),\u000aand the F_rt value can be reduced (toward min_F_rt) by exp_factor_rt, which is\u000adependent on the adjusted (overall) correlation of rt and thl.\u000a\u000aThe adjusted (overall) correlation of rt and thl is:\u000a\u000aadj_corr_rt_thl = rtpthlp / ( sqrt( rtp ) * sqrt( thlp2 ) )\u000a * sgn( wprtp ) * sgn( wpthlp ).\u000a\u000aThe exp_factor_rt is:\u000a\u000aexp_factor_rt = 1 - exp{ -0.2 * ( adj_corr_rt_thl + 1 )^5^ }.\u000a\u000aThe equation for F_rt is:\u000a\u000aF_rt = min_F_rt + ( max_F_rt - min_F_rt ) * coef_rt * exp_factor_rt;\u000a\u000awhere 0 <= coef_rt <= 1.\u000a\u000aThe equation for F_thl is:\u000a\u000aF_thl = min_F_thl + ( max_F_thl - min_F_thl ) * coef_thl;\u000a\u000awhere 0 <= coef_thl <= 1 (and where exp_factor_thl is simply set to 1).\u000a\u000aCLUBB Trac ticket references: clubb:ticket:777 and clubb:ticket:808.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8521 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c7465ccca8ca132cae3740697ffb3ecf87b45781\u000a", "date" : "2018-01-09 05:51:39 +0000", "id" : "c5944a96c830d5fbbe8595c7673cbfbe30c90c3e", "msg" : "I changed the way that F_rt and F_thl are set in the new PDF. They are now set", "paths" : [ { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf_main.F90" ], "commitId" : "085d3f50af1eebbbaa47033513bccf03506ab3ec", "timestamp" : 1515477557000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I changed the flag setting on the new PDF so that it always uses w as the setter\u000avariable.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8522 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f8df06311b269503e0721d31861f86af7a560f3d\u000a", "date" : "2018-01-09 05:59:17 +0000", "id" : "085d3f50af1eebbbaa47033513bccf03506ab3ec", "msg" : "I changed the flag setting on the new PDF so that it always uses w as the setter", "paths" : [ { "editType" : "edit", "file" : 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"huebler@uwm.edu", "comment" : "Removed unused variables causing warnings clubb:ticket:803\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8538 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 447dda2b6f9f50dbdc0ead7ebb04c82173e5ad39\u000a", "date" : "2018-01-22 23:01:52 +0000", "id" : "6f7801daba3f1a59ce0a4c8c41d6c871fe959502", "msg" : "Removed unused variables causing warnings clubb:ticket:803", "paths" : [ { "editType" : "edit", "file" : "Nc_Ncn_eqns.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf_main.F90", "pdf_closure_module.F90" ], "commitId" : "32948e0ff5444ecbf76708f75bd469a8bd2dbf27", "timestamp" : 1516688723000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the call to the new PDF so that Skrt and Skthl are intent INOUT\u000avariables. In the scenario that either one (or both) of these skewnesses are\u000aclipped in the new PDF, the updated values of Skrt and Skthl are passed out.\u000aThis is necessary for the PDF parameter unit tests to work properly.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8539 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8c597babe3e55f0052ca3b582ed7f5aaf64a3e3e\u000a", "date" : "2018-01-23 06:25:23 +0000", "id" : "32948e0ff5444ecbf76708f75bd469a8bd2dbf27", "msg" : "I updated the call to the new PDF so that Skrt and Skthl are intent INOUT", "paths" : [ { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "precipitation_fraction.F90" ], "commitId" : "1911423245af862a7eb5e57f8e9bcc91b8af88d8", "timestamp" : 1516832610000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Removed many eqaulity comparison warnings in precipitation_fraction.F90 clubb:ticket:803\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8545 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: bf1ce0c334d2290189095d16da33b3298eea51be\u000a", "date" : "2018-01-24 22:23:30 +0000", "id" : "1911423245af862a7eb5e57f8e9bcc91b8af88d8", "msg" : "Removed many eqaulity comparison warnings in precipitation_fraction.F90 clubb:ticket:803", "paths" : [ { "editType" : "edit", "file" : "precipitation_fraction.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "d56edc54adcaea428260146d038a0f6893a6bcdc", "timestamp" : 1516914489000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding a new function, calc_wpxpyp_pdf, to pdf_closure_module.F90. This\u000afunction calculates the term that I derived by integrating over the\u000aPDF. This function is used to calculate . Shortly, it will also\u000abe used to calculate and . This new calculation of\u000a allows for the PDF component correlations involving w to have a value\u000aother than 0. This generalizes the calculation for a PDF other than ADG1 or\u000aADG2.\u000a\u000aCLUBB's calculation of wprtpthlp in pdf_closure is currently just used for\u000astatistical output. For ADG1, the old form and the new form of wprtpthlp\u000aproduce the same result mathematically. However, owing to numerical roundoff,\u000athe results of the wprtpthlp in the new revision are BIT_CHANGING compared to\u000athe old revision. Otherwise, the results in GrADS output files for all other\u000aoutputs from this revision are an exact match to the results in GrADS output\u000afiles from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777 and clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8546 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 85a115499facd5577647492c2a1cc8c1419b2426\u000a", "date" : "2018-01-25 21:08:09 +0000", "id" : "d56edc54adcaea428260146d038a0f6893a6bcdc", "msg" : "I am adding a new function, calc_wpxpyp_pdf, to pdf_closure_module.F90. This", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "fd7aa20bb54009799ca395df136dc7703462c698", "timestamp" : 1516914792000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I finished adding the units to the variable descriptions in\u000afunction calc_wpxpyp_pdf.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8547 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 227018a956203820e0e6e3deb63d7064442e00ad\u000a", "date" : "2018-01-25 21:13:12 +0000", "id" : "fd7aa20bb54009799ca395df136dc7703462c698", "msg" : "I finished adding the units to the variable descriptions in", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "5c5313f5a0d4fc7b43a834ff3603f7ea4312d8b3", "timestamp" : 1516921136000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "The calculation of higher-order scalar terms , ,\u000a, and are now generalzed for any PDF type.\u000a\u000aFor ADG1, the old form and the new form of these scalar terms produce the same\u000aresults mathematically. However, owing to numerical roundoff, the results of\u000athe calculations in the new revision are altered compared to the old revision.\u000a\u000aSince scalar calculations aren't output to standard stats, the results in GrADS\u000aoutput files from this revision are an exact match to the results in GrADS\u000aoutput files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:806.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8548 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 1de02e2e856ebe28ccf7fa96e26e146a7c1de5fe\u000a", "date" : "2018-01-25 22:58:56 +0000", "id" : "5c5313f5a0d4fc7b43a834ff3603f7ea4312d8b3", "msg" : "The calculation of higher-order scalar terms , ,", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "parameter_indices.F90", "clubb_api_module.F90", "new_pdf_main.F90" ], "commitId" : "e6afdac47f9659f2f9d0616bf08f7f036ecde46f", "timestamp" : 1517097814000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added the tunable or adjustable parameters for the new PDF to CLUBB's list\u000aof tunable parameters.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8550 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c2d6df498f894b70febc252006b96502a6877d88\u000a", "date" : "2018-01-28 00:03:34 +0000", "id" : "e6afdac47f9659f2f9d0616bf08f7f036ecde46f", "msg" : "I added the tunable or adjustable parameters for the new PDF to CLUBB's list", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90", "advance_xm_wpxp_module.F90", "numerical_check.F90", "pdf_closure_module.F90", "diagnose_correlations_module.F90", "new_pdf_main.F90", "advance_helper_module.F90" ], "commitId" : "3a41920e95d798623cc40f94168d709e0654c81a", "timestamp" : 1517876940000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Fixed various warnings. Mainly by removing unused variables and commenting out unused procedures. See clubb:ticket:803\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8567 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9fcc71ba9fe9e105b1180b1357a4a8513073d9fc\u000a", "date" : "2018-02-06 00:29:00 +0000", "id" : "3a41920e95d798623cc40f94168d709e0654c81a", "msg" : "Fixed various warnings. Mainly by removing unused variables and commenting out unused procedures. 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This should be BIT_CHANGING see clubb:ticket:804\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8581 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c47f680bc0e4fa7ba6a8989a2c15a9f3b1a3ece3\u000a", "date" : "2018-02-22 01:56:05 +0000", "id" : "3290e0eba4a72f8a7ec08d543e1105ab05cc8597", "msg" : "Switched from using the erf function defined by anl_erf to the intristic erf function. 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However, plotgen shows that lines for the old\u000aversion and the new version overlap. The only cases that show any differences\u000aare the cases that are traditionally extremely sensitive.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8584 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 817ad4cce25c98568f8b5f7239e623c56505195d\u000a", "date" : "2018-02-27 07:26:18 +0000", "id" : "496afc42dfa487aa03127eaae63bef0ab026d553", "msg" : "I am altering the solution to the wp3 predictive equation to calculate the", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "model_flags.F90" ], "commitId" : "58ac5319ebb7dbec2410e3dff1fa80c3999a9be5", "timestamp" : 1519792557000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I fixed the problem with the wp3 budgets as a result of r8584. The budgets in\u000athe new revision now match (lines overlap) the budgets from r8583.\u000a\u000aI also added the l_use_explicit_turbulent_adv flag, which will be used to allow\u000aan explicit treatment of the turbulent advection term (for those equations where\u000athe turbulent advection term is calculated by integrating over the PDF).\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8585 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 15e67de170ecb2fe141ad76cccf699e67883d1e0\u000a", "date" : "2018-02-28 04:35:57 +0000", "id" : "58ac5319ebb7dbec2410e3dff1fa80c3999a9be5", "msg" : "I fixed the problem with the wp3 budgets as a result of r8584. The budgets in", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90", "advance_xp2_xpyp_module.F90" ], "commitId" : "0908a71238f2462ae5f5b6b88c52689ba918e13f", "timestamp" : 1519940856000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I altered the names of the turbulent advection functions that are closed by\u000athe PDF (from integration over the PDF). The current functions have been\u000aaltered to include ADG1 in their names, because the closure is done by assuming\u000aADG1 is the PDF used.\u000a\u000aThe results of this revision are an exact match to the results from the previous\u000arevision for all cases. However, yesterday's clubb:r8587 changed results\u000awithout including BIT_CHANGING in the commit message, so that is being added\u000ahere to reset the appropriate Bitten test.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:804.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8589 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 59983e00cb8d7b0d64af979ab088c411ff760466\u000a", "date" : "2018-03-01 21:47:36 +0000", "id" : "0908a71238f2462ae5f5b6b88c52689ba918e13f", "msg" : "I altered the names of the turbulent advection functions that are closed by", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "54acce1ef42b67cfeff425f4b147f1a396d108f2", "timestamp" : 1519941671000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a couple comments about how the discretization of the turbulent\u000aadvection terms are specific to the ADG1 PDF.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8590 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6759e06e920dd46cbd647292b8f39a9f1fe53acd\u000a", "date" : "2018-03-01 22:01:11 +0000", "id" : "54acce1ef42b67cfeff425f4b147f1a396d108f2", "msg" : "I added a couple comments about how the discretization of the turbulent", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90" ], "commitId" : "6bbed2efbc5d562a7f4aded4c5b0d5eadba2912b", "timestamp" : 1519976572000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added the function that sets up the implicit calculation of the wp3 turbulent\u000aadvection term for the new PDF. This has not yet been interfaced with the code.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8591 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 782eb348eff41c4908448320d84b859108e3bcd6\u000a", "date" : "2018-03-02 07:42:52 +0000", "id" : "6bbed2efbc5d562a7f4aded4c5b0d5eadba2912b", "msg" : "I added the function that sets up the implicit calculation of the wp3 turbulent", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90" ], "commitId" : "60e6f11dd819cafcfa5a4c6b1f7c3ed713d1f654", "timestamp" : 1520044506000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a function that calculates the explicit form of the wp3 turbulent\u000aadvection term to advance_wp2_wp3_module.F90. This option works for any PDF\u000atype.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8592 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 3e9e64e2476e7196d4b35f62eabb21b4fb684a1f\u000a", "date" : "2018-03-03 02:35:06 +0000", "id" : "60e6f11dd819cafcfa5a4c6b1f7c3ed713d1f654", "msg" : "I added a function that calculates the explicit form of the wp3 turbulent", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "821c06bfa97f773d98c40085edb2645fd6e407be", "timestamp" : 1520281347000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding a function to calculate the turbulent advection of wpxp explicitly.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8593 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 23fe1bf4037d21c1827c4ff9e46012a5f88090b5\u000a", "date" : "2018-03-05 20:22:27 +0000", "id" : "821c06bfa97f773d98c40085edb2645fd6e407be", "msg" : "I am adding a function to calculate the turbulent advection of wpxp explicitly.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "5234cd6880cd9f87b335bc9ad183df7bb74a5992", "timestamp" : 1520286920000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding a function to calculate the turbulent advection of xp2 and xpyp\u000aexplicitly. This option works for any PDF type.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8594 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 501c3fde5d6941d5913c78f7106c70681d33d9b6\u000a", "date" : "2018-03-05 21:55:20 +0000", "id" : "5234cd6880cd9f87b335bc9ad183df7bb74a5992", "msg" : "I am adding a function to calculate the turbulent advection of xp2 and xpyp", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "pdf_closure_module.F90", "advance_clubb_core_module.F90", "model_flags.F90" ], "commitId" : "186420004c5507db0ee5040a91b25298e89ca8db", "timestamp" : 1520310367000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I interfaced the wp3 explicit turbulent advection code with CLUBB. It is\u000aturned off by default.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8595 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 985667d04c031b0b8feb554b6edb1260a3e94faf\u000a", "date" : "2018-03-06 04:26:07 +0000", "id" : "186420004c5507db0ee5040a91b25298e89ca8db", "msg" : "I interfaced the wp3 explicit turbulent advection code with CLUBB. It is", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_wp2_wp3_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "48ea03ac7ef620f41952bc774f75e0ee29a68f71", "timestamp" : 1520401533000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am interfacing the wpxp explicit turbulent advection option with the rest of\u000athe code.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8596 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b092b91fbe367a6a286ce1eb60b65edb011e5157\u000a", "date" : "2018-03-07 05:45:33 +0000", 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"2018-03-07 20:00:45 +0000", "id" : "7d58047821a003b123d8388e646c29942dee2ab3", "msg" : "I fixed a small bug with the explicit turbulent advection option for wpxp.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90", "pdf_closure_module.F90", "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "ecda7108a1fdb1ec9d9ea3b17af63c07090db3d1", "timestamp" : 1520462369000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am interfacing the xp2/xpyp explicit turbulent advection term with CLUBB code.\u000aThis works generally for any PDF type.\u000a\u000aCLUBB Trac ticket reference: CLUBB:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: 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the new PDF, for some\u000acalculations don't need to be made when turbulent advection is being treated\u000aexplicitly.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8599 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f477c736d61efd958d2442176fcdf3ca91f10bd2\u000a", "date" : "2018-03-08 23:31:51 +0000", "id" : "4c69f1b72a411929d718806f5cda271949ad9a43", "msg" : "I added the l_explicit_turbulent_adv_* family of flags to the new PDF, for some", "paths" : [ { "editType" : "edit", "file" : "new_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "new_pdf_main.F90", "pdf_closure_module.F90" ], "commitId" : "199de59e71871807cd93bcb4ebc98e799a85a349", "timestamp" : 1520977857000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am packing up the implicit coefficients and explicit terms calculated by the\u000anew PDF into a derived type variable. That variable is passed back to\u000aadvance_clubb_core so it can be used for such things as implicit turbulent\u000aadvection of wp3, etc. This variable is also passed into the PDF parameter\u000aunit tests. There, in the future, it will be used for such things as double\u000achecking such things as: wp4 = coef_wp4_implicit * wp2^2^, etc.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8602 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c69c21bfdbfa0ab19a6545692b1682ecf34cdaba\u000a", "date" : "2018-03-13 21:50:57 +0000", "id" : "199de59e71871807cd93bcb4ebc98e799a85a349", "msg" : "I am packing up the implicit coefficients and explicit terms calculated by the", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "a89104550d9e46e533fa31bf3bd92c83677614b6", "timestamp" : 1520982937000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Made epss variable based on its use by adding flag l_high_accuracy_parab_cyl_fnc. Low accuracy for runs (epss=1e-4) and high accuracy for tests (epss=1e-15), see clubb:ticket:804\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8603 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b8da02f687d55e0d56b7d1c141da50be60d06ada\u000a", "date" : "2018-03-13 23:15:37 +0000", "id" : "a89104550d9e46e533fa31bf3bd92c83677614b6", "msg" : "Made epss variable based on its use by adding flag l_high_accuracy_parab_cyl_fnc. Low accuracy for runs (epss=1e-4) and high accuracy for tests (epss=1e-15), see clubb:ticket:804", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_pdf.F90" ], "commitId" : "6d734fcb31a8876c05eae5b5ad869762c825603d", "timestamp" : 1521052615000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I made a slight change to function calc_coef_wpxp2_implicit in new_pdf.F90.\u000aA small bug was brought to light by last night's G unit test failure.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8604 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: bfdba85d07239103cc20ee7cf1445976d442f95c\u000a", "date" : "2018-03-14 18:36:55 +0000", "id" : "6d734fcb31a8876c05eae5b5ad869762c825603d", "msg" : "I made a slight change to function calc_coef_wpxp2_implicit in new_pdf.F90.", "paths" : [ { "editType" : "edit", "file" : "new_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_clubb_core_module.F90" ], "commitId" : "1624553b92964a93b60b81bc053b580e43ebd287", "timestamp" : 1521067112000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have completed interfacing the implicit form of the wp3 turbulent advection\u000aterm for the new PDF with the rest of the CLUBB code.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8605 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 33dfdbb42d1322be71e5011913a6a57fb2e0aa31\u000a", "date" : "2018-03-14 22:38:32 +0000", "id" : "1624553b92964a93b60b81bc053b580e43ebd287", "msg" : "I have completed interfacing the implicit form of the wp3 turbulent advection", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "42c5e04bcbd0387f44c6b3ac17b9ebbb787579f9", "timestamp" : 1521069079000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "When the l_explicit_turbulent_adv_wp3 flag is enabled, the turbulent advection\u000aof wp3 at thermodynamic level 2 is based on wp4 at momentum levels 1 and 2.\u000aThe value of wp4 at momentum level 1 is calculated by interpolating the values\u000aof wp4_zt that is calculated by integrating over the PDF at thermodynamic levels\u000a1 and 2. However, the values that come from the call to pdf_closure at\u000athermodynamic level 1 (the \"below ground\" level) are unreliable because the\u000ainputs are unreliable at that particular level.\u000a\u000aThe best solution is to simply set wp4 at momentum level 1 to 0. This also\u000amatches the value of wp4 at the upper boundary.\u000a\u000aBy default, CLUBB does not use explicit turbulent advection. However, the\u000aresults are technically BIT_CHANGING because wp4 is still output to statistics.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8606 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e5488acd9de2a8e9219a27ff57c3cba664c8826c\u000a", "date" : "2018-03-14 23:11:19 +0000", "id" : "42c5e04bcbd0387f44c6b3ac17b9ebbb787579f9", "msg" : "When the l_explicit_turbulent_adv_wp3 flag is enabled, the turbulent advection", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "Skx_module.F90" ], "commitId" : "f645a7fa5b5eab7ab36b427730226ba206db0d6a", "timestamp" : 1521147148000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I cleaned up the Skx_module and added an additional function,\u000axp3_LG_2005_ansatz, which calculates xp3 using Skx from the LG 2005 ansatz.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8608 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 709538fce7534b77ec33ae37bbb69353379f7672\u000a", "date" : "2018-03-15 20:52:28 +0000", "id" : "f645a7fa5b5eab7ab36b427730226ba206db0d6a", "msg" : "I cleaned up the Skx_module and added an additional function,", "paths" : [ { "editType" : "edit", "file" : "Skx_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "Skx_module.F90" ], "commitId" : "0f015a9eca1f27ecd084f20d80713c35e94db7c9", "timestamp" : 1521151331000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I fixed a bug in the calculation of scalar skewness. It was being set to 0,\u000acausing problems with the new PDF. I corrected the bug and I also made the\u000ascalar skewness code a little more user friendly. It is now controlled by a\u000aflag, l_use_xp3_LG_2005_ansatz, which is set to true by default.\u000a\u000aIn the default ADG1 code, the LG 2005 ansatz is not used interactively. It only\u000aoutputs to stats. This commit is BIT_CHANGING only because statistics change.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8610 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: d86300fff06c4ae2f1d5673e6a0e1c22cf8566a6\u000a", "date" : "2018-03-15 22:02:11 +0000", "id" : "0f015a9eca1f27ecd084f20d80713c35e94db7c9", "msg" : "I fixed a bug in the calculation of scalar skewness. It was being set to 0,", "paths" : [ { "editType" : "edit", "file" : "Skx_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "bce822492723d4d4b56113dc49125951ee4f004d", "timestamp" : 1521152411000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I moved the location of the LG 2005 ansatz to calculate xp3 because it would be\u000amore helpful for testing purposes before the first call to pdf_closure_driver\u000a(which is the call we use). In default CLUBB, this affects only statistics.\u000aHowever, this change is technically BIT_CHANGING.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8611 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 3a1c774648552b4fb8b0d3e4799bd460890f8b3b\u000a", "date" : "2018-03-15 22:20:11 +0000", "id" : "bce822492723d4d4b56113dc49125951ee4f004d", "msg" : "I moved the location of the LG 2005 ansatz to calculate xp3 because it would be", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "a85dc94233b2feac1f7631b66fc16268f1bd4711", "timestamp" : 1521251292000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I reverted clubb:r8611 because (1) having the code in the other location\u000aintroduced a bug, and (2) upon further review, it just makes more sense in this\u000alocation, and is more consistent with the rest of the code.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8614 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 71881434bb65be73688a08b4f88bd556f1733a6b\u000a", "date" : "2018-03-17 01:48:12 +0000", "id" : "a85dc94233b2feac1f7631b66fc16268f1bd4711", "msg" : "I reverted clubb:r8611 because (1) having the code in the other location", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "5eb6a87a6ff59bcc68d56a668a1fddf396f07a4a", "timestamp" : 1521502260000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added a new function, term_ta_new_pdf_lhs, to\u000aadvance_xp2_xpyp_module.F90. This function will handle the implicit turbulent\u000aadvection for xp2 and the implicit portion of the semi-implicit turbulent\u000aadvection for xpyp for the new PDF. This code has not yet been interfaced\u000awith the rest of CLUBB.\u000a\u000aThe previous commit, r8614, changed statistical results, but I forgot to put\u000aa BIT_CHANGING in the log message, so here it is.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8615 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4a56ec579a61738b9a433cadb76b95ea2e234052\u000a", "date" : "2018-03-19 23:31:00 +0000", "id" : "5eb6a87a6ff59bcc68d56a668a1fddf396f07a4a", "msg" : "I have added a new function, term_ta_new_pdf_lhs, to", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_xp2_xpyp_module.F90" ], "commitId" : "1a64aba9e0965e5ca2be2ae42114ecfd18324a88", "timestamp" : 1521603467000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have linked the implicit turbulent advection code for rtp2 and thlp2 to the\u000arest of the CLUBB code.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:777.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8616 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 5c892b7b825cfdea679a968ea139fa8e360c758a\u000a", "date" : "2018-03-21 03:37:47 +0000", "id" : "1a64aba9e0965e5ca2be2ae42114ecfd18324a88", "msg" : "I have linked the implicit turbulent advection code for rtp2 and thlp2 to the", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp3_module.F90" ], "commitId" : "32ef7b3f76f1eeb30646cd50c0c3f6d0fd913815", "timestamp" : 1521949587000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added a new file that has two options for handling the xp3 term for\u000ascalars (thlp3, rtp3, and sclrp3). Both options are based on the d(xp3)/dt\u000aequation. One option predicts xp3 with the turbulent production, accumulation,\u000aand turbulent dissipation terms. The other option uses a steady-state\u000aapproximation (dxp3/dt = 0) and calculates xp3 from the same three terms, since\u000axp3 is found in the turbulent dissipation term.\u000a\u000aThis has not yet been interfaced with the rest of the CLUBB code. When it is,\u000athis code will be one option for calculating xp3, with the other option being\u000athe ansatz.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:822.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8618 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 7be02a8f18fcc08247c90045078ea95a36bc041e\u000a", "date" : "2018-03-25 03:46:27 +0000", "id" : "32ef7b3f76f1eeb30646cd50c0c3f6d0fd913815", "msg" : "I have added a new file that has two options for handling the xp3 term for", "paths" : [ { "editType" : "add", "file" : "advance_xp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp3_module.F90", "advance_clubb_core_module.F90", "model_flags.F90" ], "commitId" : "36fc76e515e1809b0c2db8c8acbb6caf6c2bc5e4", "timestamp" : 1521954033000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have interface the new xp3 code to the rest of CLUBB. It can be turned on\u000awith the l_advance_xp3 flag in model_flags.F90. It is turned off by default,\u000awhich means that default CLUBB still continues to use the ansatz to calculate\u000axp3. The results in GrADS output files from this revision are and exact match\u000ato the results in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:822.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8619 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8b94ac8fb33138049c067c06d5aeae2c4279510b\u000a", "date" : "2018-03-25 05:00:33 +0000", "id" : "36fc76e515e1809b0c2db8c8acbb6caf6c2bc5e4", "msg" : "I have interface the new xp3 code to the rest of CLUBB. It can be turned on", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_xp3_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_xp3_module.F90" ], "commitId" : "817b7d5301840ee5fa5fe98b74b066903a356caa", "timestamp" : 1522268903000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a driver level subroutine for the new advance xp3 code. This will make\u000ait easier to add xp3 budget statistics.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8622 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: d0f2a8e83ed686b15cee05cecf437abc9528da86\u000a", "date" : "2018-03-28 20:28:23 +0000", "id" : "817b7d5301840ee5fa5fe98b74b066903a356caa", "msg" : "I added a driver level subroutine for the new advance xp3 code. This will make", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_xp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "advance_xp3_module.F90", "stats_zt_module.F90" ], "commitId" : "7d820dc808911b68c5bc7b3bc79824426e2e6beb", "timestamp" : 1522276133000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added budget stats for rtp3 and thlp3 to CLUBB.\u000a\u000aSince this commit adds statistics, it is technically BIT_CHANGING. However,\u000athe results in GrADS zm, sfc, etc. output files from this revision are an exact\u000amatch to the results in the same GrADS output files from the previous revision\u000afor all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:822.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8624 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c1f320b0d32ee3c7f42a22465d991fcfa69645df\u000a", "date" : "2018-03-28 22:28:53 +0000", "id" : "7d820dc808911b68c5bc7b3bc79824426e2e6beb", "msg" : "I added budget stats for rtp3 and thlp3 to CLUBB.", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "advance_xp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "ddc181ff3266df2b2d9620d409d13c09cab4d2bd", "timestamp" : 1523057575000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding code that allows the turbulent advection of wpxp to be treated\u000asemi-implicitly for the new PDF.\u000a\u000aThe wpxp code was already split into two sections based on an \"if\" statement.\u000aOne section uses a single left-hand side, and the other section uses three\u000aleft-hand sides (for wprtp, wpthlp, and wpsclrp). The new code has been added\u000ato the section with three left-hand sides. For the section with a single\u000aleft-hand side, dummy variables are passed instead.\u000a\u000aThe default is to call the single left-hand side, and it will remain that way.\u000aWhen the single left-hand side is called, the new PDF must use explicit\u000aturbulent advection. However, since the code was already there for the section\u000awith three left-hand sides, it made sense to enter the semi-implicit code in\u000athat section. This way, for the new PDF, the semi-implicit turbulent advection\u000acan be compared to the explicit turbulent advection to see if there is any\u000adowngrade in results. For ADG1, the implicit turbulent advection and the\u000aexplicit turbulent advection produce very similar results.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8629 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 71546e35186628f4a7290aac600d51d946fe5eda\u000a", "date" : "2018-04-06 23:32:55 +0000", "id" : "ddc181ff3266df2b2d9620d409d13c09cab4d2bd", "msg" : "I am adding code that allows the turbulent advection of wpxp to be treated", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90", "clubb_api_module.F90", "diagnose_correlations_module.F90", "stats_type_utilities.F90", "grid_class.F90", "setup_clubb_pdf_params.F90", "advance_windm_edsclrm_module.F90", "surface_varnce_module.F90", "mono_flux_limiter.F90", "advance_wp2_wp3_module.F90", "mixing_length.F90", "advance_xp2_xpyp_module.F90", "error_code.F90", "pdf_closure_module.F90", "corr_varnce_module.F90", "precipitation_fraction.F90", "numerical_check.F90", "gmres_wrap.F90", "pos_definite_module.F90", "parameters_tunable.F90", "advance_clubb_core_module.F90", "lapack_wrap.F90", "fill_holes.F90", "interpolation.F90", "stats_clubb_utilities.F90" ], "commitId" : "3f1dc0ded1ee5f8b5885043aaf605e2233d04d2e", "timestamp" : 1524171137000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Redesigned error code system. Errors are now treated as strictly fatal, meaning they are only thrown by procedures which cannot continue or has detected something that will crash the code. When the error occurs the procedure which detected it should immediately report it and either return to its calling procedure or stop the program, this is to avoid a cascade of error reports due to a single error. Other problems are now reported at level 1 and 2 debugging and only write the error out rather than set a code.\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8635 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 0864df227743b27686b96e826991a1bf7fd8c18b\u000a", "date" : "2018-04-19 20:52:17 +0000", "id" : "3f1dc0ded1ee5f8b5885043aaf605e2233d04d2e", "msg" : "Redesigned error code system. Errors are now treated as strictly fatal, meaning they are only thrown by procedures which cannot continue or has detected something that will crash the code. When the error occurs the procedure which detected it should immediately report it and either return to its calling procedure or stop the program, this is to avoid a cascade of error reports due to a single error. 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Also added a check that outputs an error message when T_in_K is less than 200K in the lowest 10 grid levels, this check is done in subroutine parameterization_check. clubb:ticket:800\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8697 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 53e78bde17cf1e7916cffca0c52828aea6a78804\u000a", "date" : "2018-05-31 18:47:08 +0000", "id" : "7a2fad444aefaa42626b4f4f1ba874ad6a9ac934", "msg" : "Completed the list of variables that get reported from errors within advance_wp2_wp3 and advance_xm_wpxp. 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The goal is to use this type variable for all PDF\u000atypes, not just for the new PDF.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8702 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e2a336674b0425021f90e328156effd55497e67b\u000a", "date" : "2018-06-07 20:04:39 +0000", "id" : "ac9622bf0cc09cc316434886e129bb7314d08a11", "msg" : "I am moving type variable implicit_coefs_terms from new_pdf_main.F90 to", "paths" : [ { "editType" : "edit", "file" : "pdf_parameter_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "7d18837476666806239c9825cf4b67e6f9a23c18", "timestamp" : 1529024997000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Modified many aspects of the tuner, mostly within esa_driver. Also added check to ensure that C7 and C11 have valid values before the run is tried, this should stop the fire tuning nightly test from crashing. See clubb:ticket:802\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8705 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9cedfb7d28f1ed37f746348dbb9082075ebe26ce\u000a", "date" : "2018-06-15 01:09:57 +0000", "id" : "7d18837476666806239c9825cf4b67e6f9a23c18", "msg" : "Modified many aspects of the tuner, mostly within esa_driver. Also added check to ensure that C7 and C11 have valid values before the run is tried, this should stop the fire tuning nightly test from crashing. See clubb:ticket:802", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "eabe48e0df1cdb0f1e235c23a9078a4afac1d17e", "timestamp" : 1529121760000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Added checks in subroutine setup_parameters() to ensure that C7b and C11b are within [0:1] see clubb:ticket:802\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8706 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 02a68858d0eb8c5ae738be483dd9ff80835de531\u000a", "date" : "2018-06-16 04:02:40 +0000", "id" : "eabe48e0df1cdb0f1e235c23a9078a4afac1d17e", "msg" : "Added checks in subroutine setup_parameters() to ensure that C7b and C11b are within [0:1] see clubb:ticket:802", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "numerical_check.F90" ], "commitId" : "f8e787b9279acee257f8f5239f4d59565a1a31b0", "timestamp" : 1529122288000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "This should fix the thlm out of bounds error on clubb:ticket:828\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8707 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b66209934392d16efc4dc1e3787cb8e0301f1dd1\u000a", "date" : "2018-06-16 04:11:28 +0000", "id" : "f8e787b9279acee257f8f5239f4d59565a1a31b0", "msg" : "This should fix the thlm out of bounds error on clubb:ticket:828", "paths" : [ { "editType" : "edit", "file" : "numerical_check.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "pdf_closure_module.F90", "advance_clubb_core_module.F90", "new_pdf_main.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "59dd7cde986a3b07374d847937800451514f2378", "timestamp" : 1529347561000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I changed the name of type variable new_pdf_implct_coefs_terms to\u000apdf_implicit_coefs_terms in order to help generalize this variable for use with\u000aany type of PDF.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8708 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 06cc2f631557b8f9b584c2260843ca3aef8d1a61\u000a", "date" : "2018-06-18 18:46:01 +0000", "id" : "59dd7cde986a3b07374d847937800451514f2378", "msg" : "I changed the name of type variable new_pdf_implct_coefs_terms to", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "numerical_check.F90" ], "commitId" : "3a824d458cbfb497e1b920ed3f9b1128924210f6", "timestamp" : 1529359496000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changed T_in_K check within subroutine parameterization_check to instead check thlm, see clubb:ticket:800 and clubb:ticket:828\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8709 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f413987ba6cb3288915c9ee945dbb23ca7ca13e4\u000a", "date" : "2018-06-18 22:04:56 +0000", "id" : "3a824d458cbfb497e1b920ed3f9b1128924210f6", "msg" : "Changed T_in_K check within subroutine parameterization_check to instead check thlm, see clubb:ticket:800 and clubb:ticket:828", "paths" : [ { "editType" : "edit", "file" : "numerical_check.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "b1accae6cdf52d3613804d3e868dd2f2259ae9d8", "timestamp" : 1529937463000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a flag option to clip the (large, negative) effects of microphysics on\u000artp2 and thlp2. Right now, this flag is turned off by default, so the results\u000aremain the same.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8712 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 56dcb3ae49ea059027553d6236b35374df61ab73\u000a", "date" : "2018-06-25 14:37:43 +0000", "id" : "b1accae6cdf52d3613804d3e868dd2f2259ae9d8", "msg" : "I added a flag option to clip the (large, negative) effects of microphysics on", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90", "clip_explicit.F90" ], "commitId" : "313ad512a4c8fdc9f1e171ebb05a4ecf01b749d4", "timestamp" : 1529947245000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a flag option to calculate the minimum threshold for xp2 (rtp2 and\u000athlp2) based on maintaining an overall correlation of w and x that falls\u000abetween -max_mag_correlation and max_mag_correlation. Right now, this flag is\u000aturned off by default, so the results remain the same.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:822.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8713 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 827263c713117eec5b4f415f3fab91e7aacd751e\u000a", "date" : "2018-06-25 17:20:45 +0000", "id" : "313ad512a4c8fdc9f1e171ebb05a4ecf01b749d4", "msg" : "I added a flag option to calculate the minimum threshold for xp2 (rtp2 and", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "clip_explicit.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clip_explicit.F90", "advance_xp2_xpyp_module.F90", "constants_clubb.F90" ], "commitId" : "f41025c81a0ff30e00667a02e0060a989d745acc", "timestamp" : 1530036019000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a special max magnitude correlation for fluxes wprtp and wpthlp. This\u000avariable is called max_mag_correlation_flux and it is set to 0.99 by default\u000a(the same value as max_mag_correlation) so results remain the same for now.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8714 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 820d0ca1cfb24d472ea0df14d9773a300f7838ca\u000a", "date" : "2018-06-26 18:00:19 +0000", "id" : "f41025c81a0ff30e00667a02e0060a989d745acc", "msg" : "I added a special max magnitude correlation for fluxes wprtp and wpthlp. This", "paths" : [ { "editType" : "edit", "file" : "clip_explicit.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "constants_clubb.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "75959a494104447dc36320e08168100f868558dc", "timestamp" : 1530242220000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Made better esa_driver, made tuner_test to test the driver, added variable range checks. Tried to make the tuner in better in general, but that whole bunch of code needs nothing short of replacement. This commit is bit identical execpt for tuning results, see clubb:ticket:802 for a bunch more information\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8716 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: cb3732ec186d149883164709deaead448d995038\u000a", "date" : "2018-06-29 03:17:00 +0000", "id" : "75959a494104447dc36320e08168100f868558dc", "msg" : "Made better esa_driver, made tuner_test to test the driver, added variable range checks. Tried to make the tuner in better in general, but that whole bunch of code needs nothing short of replacement. 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This is for the momentum-level predictive\u000afields that handle turbulent advection by integrating over the PDF.\u000a\u000aRegardless of PDF type, all of these turbulent advection terms can be written\u000ain the following form:\u000a\u000ad/dt = - (1/rho_ds) * d( rho_ds * ) / dz; where\u000a\u000a = coef_wpxpyp_implicit * + term_wpxpyp_explicit.\u000a\u000aThis allows for one set of turbulent advection functions that can be reused for\u000amultiple variables, for any PDF type, and even for the explicit turbulent\u000aadvection option. This allows for a much simpler flow of coding, and also\u000ahas the perk of expanding the \"upwind\" turbulent advection option to other\u000aPDF types (besides ADG1), without adding a whole bunch of specialty functions.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8724 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: dd55be7bcda2c95e11dc19ca4b00a5ed5b07e013\u000a", "date" : "2018-07-06 22:43:57 +0000", "id" : "cee383b89783f8dba35ea28b766ec787f08691d4", "msg" : "I am adding a general purpose function for the turbulent advection of CLUBB's", "paths" : [ { "editType" : "add", "file" : "turbulent_adv_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "turbulent_adv_pdf.F90" ], "commitId" : "8229ba9d74d876bcc0698e1ac0e67d554ccee448", "timestamp" : 1530917910000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added/changed a couple comments for the rhs portion of the generalized\u000aturbulent advection functions.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8725 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 205652eccb7a8134e56139076588faf4264b0496\u000a", "date" : "2018-07-06 22:58:30 +0000", "id" : "8229ba9d74d876bcc0698e1ac0e67d554ccee448", "msg" : "I added/changed a couple comments for the rhs portion of the generalized", "paths" : [ { "editType" : "edit", "file" : "turbulent_adv_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "turbulent_adv_pdf.F90" ], "commitId" : "203d7900ea874e5b24af54b97f8d130f72c9ef25", "timestamp" : 1531162423000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "The turbulent advection file that handles turbulent advection for predictive\u000avariances and covariances (where turbulent advection is handled by integrating\u000aover the PDF) is now set! Functions that handled the LHS (implicit component)\u000aand RHS (explicit component) of the turbulent advection term are ready to go!\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8726 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 3894e413ee48034e5a8a75a0f6e49d66d9f9cccf\u000a", "date" : "2018-07-09 18:53:43 +0000", "id" : "203d7900ea874e5b24af54b97f8d130f72c9ef25", "msg" : "The turbulent advection file that handles turbulent advection for predictive", "paths" : [ { "editType" : "edit", "file" : "turbulent_adv_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "turbulent_adv_pdf.F90" ], "commitId" : "74d40e391a81f2ec1ca1d71ac5f93ccbff527841", "timestamp" : 1531262935000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a function to turbulent_adv_pdf.F90, called sgn_turbulent_velocity, that\u000acalculates the turbulent velocity for a predictive variance or covariance for\u000ause with the \"upwind\" turbulent advection option.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8728 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 0fa11b05c00ca08cd1373f15bc8d36f908a2556e\u000a", "date" : "2018-07-10 22:48:55 +0000", "id" : "74d40e391a81f2ec1ca1d71ac5f93ccbff527841", "msg" : "I added a function to turbulent_adv_pdf.F90, called sgn_turbulent_velocity, that", "paths" : [ { "editType" : "edit", "file" : "turbulent_adv_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "turbulent_adv_pdf.F90" ], "commitId" : "94d2e20139114e5f5009ea286ceccc775534f51d", "timestamp" : 1531263209000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Whoops, I forgot to make wpxpyp_zm and xpyp intent (in).\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8729 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 00b12f393cc3fd434006faebdbcbf052f1c7d792\u000a", "date" : "2018-07-10 22:53:29 +0000", "id" : "94d2e20139114e5f5009ea286ceccc775534f51d", "msg" : "Whoops, I forgot to make wpxpyp_zm and xpyp intent (in).", "paths" : [ { "editType" : "edit", "file" : "turbulent_adv_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90", "array_index.F90", "corr_varnce_module.F90" ], "commitId" : "67dcf4b14d66f7d4c55095c2d6fd2e6357548851", "timestamp" : 1531451904000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Added functionality to make the hydrometeor variances depend on the horizontal grid spacing, see clubb:ticket:830\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8730 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e9089dce7bcad2b4b235a03d128216f633136f0f\u000a", "date" : "2018-07-13 03:18:24 +0000", "id" : "67dcf4b14d66f7d4c55095c2d6fd2e6357548851", "msg" : "Added functionality to make the hydrometeor variances depend on the horizontal grid spacing, see clubb:ticket:830", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "array_index.F90" }, { "editType" : "edit", "file" : "corr_varnce_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "6fcdeeeda0f1708e9af2d38d3a47fbc7598b06ad", "timestamp" : 1531457694000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating the code that advances predictive variances and covariances in\u000aadvance_xp2_xpyp_module.F90 to use one set of turbulent advection functions\u000afor all turbulent advection options (explicit or implicit/semi-implicit based\u000aon PDF type, as well as centered or \"upwind\" discretization\").\u000a\u000aAlong the way, I discovered that the current ADG1 implementation, which is\u000asupposed to be using \"upwind\" discretization, is only using \"upwind\"\u000adiscretization for the implicit component of the turbulent advection term, while\u000ausing centered discretization for the explicit (RHS) component of the turbulent\u000aadvection term. An \"upwind\" discretization for the explicit component was never\u000aadded to the code. I assumed this was an oversight, and an \"upwind\"\u000adiscretization for the explicit component of the turbulent advection term was\u000aadded as part of the new code for this project (in a prior commit). Both\u000aimplicit and explicit components now use either centered discretization or\u000a\"upwind\" discretization consistently.\u000a\u000aOwing to the RHS discretization correct, as well owing to a different order of\u000acalculations, this commit is BIT_CHANGING. However, plots of all cases show\u000athat the previous revision and the current revision overlap for most cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8731 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: fdba5b894298fe351486792a92a521586dc1d9b7\u000a", "date" : "2018-07-13 04:54:54 +0000", "id" : "6fcdeeeda0f1708e9af2d38d3a47fbc7598b06ad", "msg" : "I am updating the code that advances predictive variances and covariances in", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "fb8065e129f7e8ea2ba43d10446efafc26555494", "timestamp" : 1531767879000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Renamed init_pdf_hydromet_arrays to init_pdf_hydromet_arrays_api since it is meant to be used by host models, clubb:ticket:830\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8733 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: fbc3b6719ef6a8a5d8f4f728c77ca6aeac8886d4\u000a", "date" : "2018-07-16 19:04:39 +0000", "id" : "fb8065e129f7e8ea2ba43d10446efafc26555494", "msg" : "Renamed init_pdf_hydromet_arrays to init_pdf_hydromet_arrays_api since it is meant to be used by host models, clubb:ticket:830", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "0249e99c6cd889bb8537572f8e1d83fc21a915e5", "timestamp" : 1531947642000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating the code that advances predictive scalar fluxes () in\u000aadvance_xm_wpxp_module.F90 to use one set of turbulent advection functions for\u000aall turbulent advection options (explicit or implicit/semi-implicit based on\u000aPDF type, as well as centered or \"upwind\" discretization).\u000a\u000aFor the default ADG1 PDF, the calculations are mathematically the same.\u000aHowever, they occur in a different order in the new code. This makes this\u000arevision BIT_CHANGING. However, plots of all cases show that the previous\u000arevision and the current revision overlap for most cases. Only the most\u000asensitive cases show differences on the plots.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8735 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ef271ff2d4a0fb4b7ca7fdfbaba3a3d2f6cac016\u000a", "date" : "2018-07-18 21:00:42 +0000", "id" : "0249e99c6cd889bb8537572f8e1d83fc21a915e5", "msg" : "I am updating the code that advances predictive scalar fluxes () in", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "fill_holes.F90" ], "commitId" : "84eb73b8d08f9bc2b3d2d3941bbc7c197b671093", "timestamp" : 1531955549000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "As a first step toward having code that can clip mean values of hydrometeor\u000aconcentrations or SILHS sample point values of hydrometeor concentrations, I\u000ahave made a new subroutine out of the code that clips hydrometeor\u000aconcentrations. It is not yet interfaced and I haven't deleted the old code\u000ayet.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:833.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8736 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 7f535b468ffcb92bbded378a263a9d3ffa2bd736\u000a", "date" : "2018-07-18 23:12:29 +0000", "id" : "84eb73b8d08f9bc2b3d2d3941bbc7c197b671093", "msg" : "As a first step toward having code that can clip mean values of hydrometeor", "paths" : [ { "editType" : "edit", "file" : "fill_holes.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "0a518f3553cb13ad37bf5410f6d638d2ea79f2db", "timestamp" : 1531963960000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "init_pdf_hydromet_arrays_api now sets the value of hydromet_dim as well, this should fix the wrf tests, but doesn't seem to fix cam. clubb:ticket:830 other:ticket:562\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8737 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 28016716b08941d7e9ed1b1055b40300eb842b9f\u000a", "date" : "2018-07-19 01:32:40 +0000", "id" : "0a518f3553cb13ad37bf5410f6d638d2ea79f2db", "msg" : "init_pdf_hydromet_arrays_api now sets the value of hydromet_dim as well, this should fix the wrf tests, but doesn't seem to fix cam. clubb:ticket:830 other:ticket:562", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "fill_holes.F90" ], "commitId" : "89000415c991e9c188c91e11fa80184e507d965f", "timestamp" : 1532030333000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have now interfaced the subroutine that I made out of the code that clips\u000ahydrometeor concentrations with the rest of CLUBB, in place of the old code.\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:833.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8738 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 1935918c4825f5c4b7b5bed91355b19954edd555\u000a", "date" : "2018-07-19 19:58:53 +0000", "id" : "89000415c991e9c188c91e11fa80184e507d965f", "msg" : "I have now interfaced the subroutine that I made out of the code that clips", "paths" : [ { "editType" : "edit", "file" : "fill_holes.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_wp2_wp3_module.F90" ], "commitId" : "e31aae7b02811fb9034da4e9e0f97f29603e2a2d", "timestamp" : 1532495361000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added new code that clips the overall correlation of w and rt or the overall\u000acorrelation of w and theta-l by increasing wp2 (after advancing wp2) when one\u000aof the aforementioned correlations is outside of the range that they're\u000asupposed to be in. This code is controlled by a flag, which is turned off by\u000adefault. The results in GrADS files from this revision are an exact match to\u000athe results in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:835.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8740 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6fc699c3a4be0c178ba1e7e05b3571bf218f5367\u000a", "date" : "2018-07-25 05:09:21 +0000", "id" : "e31aae7b02811fb9034da4e9e0f97f29603e2a2d", "msg" : "I added new code that clips the overall correlation of w and rt or the overall", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "advance_xp2_xpyp_module.F90", "stats_zt_module.F90" ], "commitId" : "d4e0f942e2c4fea13259aea59151e689111d4eb8", "timestamp" : 1532554503000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added stats for term_wprtp2_explicit and term_wpthlp2_explicit, which are\u000apart of the semi-implicit turbulent advection term for rtp2 and thlp2,\u000arespectively. 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However, this\u000ais only for *_zt stats files.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8741 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f8c7a58900f887917c29446fb79f7af1df9ac777\u000a", "date" : "2018-07-25 21:35:03 +0000", "id" : "d4e0f942e2c4fea13259aea59151e689111d4eb8", "msg" : "I added stats for term_wprtp2_explicit and term_wpthlp2_explicit, which are", "paths" : [ { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90", "advance_windm_edsclrm_module.F90" ], "commitId" : "9216aa9dddfd6115909e238aa44fc3b70ced3773", "timestamp" : 1532572197000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Made clubb_fatal_error public so host model code can detect fatal errors. clubb:ticket:800\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8742 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 41e97fd33df9189dcbd8401090b1b6fb9cbfd198\u000a", "date" : "2018-07-26 02:29:57 +0000", "id" : "9216aa9dddfd6115909e238aa44fc3b70ced3773", "msg" : "Made clubb_fatal_error public so host model code can detect fatal errors. clubb:ticket:800", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_windm_edsclrm_module.F90" ], "commitId" : "dd55be4737a50a6033e606883382a7085f9b1c26", "timestamp" : 1532572383000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Reverted advance_windm_edsclrm_module.F90, accidentally committed test code, clubb:ticket:800\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8743 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e89c92fd0f27d2c264c4bdd7cfd54d564d639ceb\u000a", "date" : "2018-07-26 02:33:03 +0000", "id" : "dd55be4737a50a6033e606883382a7085f9b1c26", "msg" : "Reverted advance_windm_edsclrm_module.F90, accidentally committed test code, clubb:ticket:800", "paths" : [ { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "095ae79bf0437ae71cade1390af663fa0ee5f1b6", "timestamp" : 1532626737000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Fixed nightly tests\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8744 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: ce40ceb7330f98de907410203e620c04fac4f7e9\u000a", "date" : "2018-07-26 17:38:57 +0000", "id" : "095ae79bf0437ae71cade1390af663fa0ee5f1b6", "msg" : "Fixed nightly tests", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_clubb_core_module.F90", "advance_xp2_xpyp_module.F90" ], "commitId" : "5a2c7c73d6490d53ab9a3c7930c37c52d52904e8", "timestamp" : 1532726843000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added code to allow C2 to be adjusted by multiplying by the greater of\u000acloud fraction or a small constant. This code is turned off by default. The\u000aresults in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aCLUBB Trac ticket reference: clubb:ticket:836.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8746 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 0b346735398eebf6d3aa78a2aade0277168bb964\u000a", "date" : "2018-07-27 21:27:23 +0000", "id" : "5a2c7c73d6490d53ab9a3c7930c37c52d52904e8", "msg" : "I have added code to allow C2 to be adjusted by multiplying by the greater of", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "model_flags.F90", "advance_xp2_xpyp_module.F90" ], "commitId" : "6c918c0f09f47468a92d2893276ae667b0fa5c63", "timestamp" : 1532820384000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I moved the location of the declaration and setting of new model flags to\u000amodel_flags.F90 so that they could be read in through the configurable model\u000aflags namelist.\u000a\u000aCLUBB Trac ticket references: clubb:ticket:835 and clubb:ticket:836.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8747 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c7148d45f984e40bf473959504068e851c565edc\u000a", "date" : "2018-07-28 23:26:24 +0000", "id" : "6c918c0f09f47468a92d2893276ae667b0fa5c63", "msg" : "I moved the location of the declaration and setting of new model flags to", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_windm_edsclrm_module.F90", "diffusion.F90" ], "commitId" : "41c69abbeda07301f40a459338d56333b541b8b6", "timestamp" : 1533077694000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Improved computational speed of windm_edsclrm_rhs and added subroutine. This commit should be BIT_CHANGING as it does calculations in different orders. Only the most sensitive cases have any noticable plot differences. See clubb:ticket:834\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8751 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 560390daf8556a0a5f94f8887d4e8fa470dcb8a7\u000a", "date" : "2018-07-31 22:54:54 +0000", "id" : "41c69abbeda07301f40a459338d56333b541b8b6", "msg" : "Improved computational speed of windm_edsclrm_rhs and added subroutine. This commit should be BIT_CHANGING as it does calculations in different orders. Only the most sensitive cases have any noticable plot differences. See clubb:ticket:834", "paths" : [ { "editType" : "edit", "file" : "diffusion.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_windm_edsclrm_module.F90", "diffusion.F90" ], "commitId" : "47cc48c6153c8ac4d46152a54b0b7ab46c6fd837", "timestamp" : 1533169930000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Fixed nightly uninitialized variables test. Renamed diffusion_zt_lhs_inner to diffusion_zt_lhs_all, it is now also capable of calculating all values including boundaries now, it's beneficial to calculate the upper boundary value in this case and I imagine other may need the lower boundary calculated as well. Cleaned up windm_edsclrm_rhs A LOT, it's more readable and has clearly ordered steps now. clubb:ticket:834\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8757 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 8c69c81acdc9cc0842ffd162a9e934d586b00c5e\u000a", "date" : "2018-08-02 00:32:10 +0000", "id" : "47cc48c6153c8ac4d46152a54b0b7ab46c6fd837", "msg" : "Fixed nightly uninitialized variables test. Renamed diffusion_zt_lhs_inner to diffusion_zt_lhs_all, it is now also capable of calculating all values including boundaries now, it's beneficial to calculate the upper boundary value in this case and I imagine other may need the lower boundary calculated as well. Cleaned up windm_edsclrm_rhs A LOT, it's more readable and has clearly ordered steps now. clubb:ticket:834", "paths" : [ { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "diffusion.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_windm_edsclrm_module.F90" ], "commitId" : "1d391de95c4b312041456ecc13b165a54f2d1402", "timestamp" : 1533236343000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Actually fixed nightly tests now (hopefully). A loop variable was being used outside a loop, which is an error that passes all the compiler tests. Also the intel compiler config file does not cause errors running if a index variable has not been initialized either, which resulted in correct seeming plots, timing, and output. I'm going to have to be stricter with the testing during these changes as loop variables and such will be often modified, I'll be sure to do a run after compiling with each compiler on top of confirming the output and running the uninitialized variable test manually. Because the last commit fixed the 2nd value of the rhs array the change will be BIT_CHANGING, but the plot output is identical for all but the most sensitive cases. clubb:ticket:834\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8758 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: be4e4b3491e9d5cb60f878d34533b97259ae75d5\u000a", "date" : "2018-08-02 18:59:03 +0000", "id" : "1d391de95c4b312041456ecc13b165a54f2d1402", "msg" : "Actually fixed nightly tests now (hopefully). A loop variable was being used outside a loop, which is an error that passes all the compiler tests. Also the intel compiler config file does not cause errors running if a index variable has not been initialized either, which resulted in correct seeming plots, timing, and output. I'm going to have to be stricter with the testing during these changes as loop variables and such will be often modified, I'll be sure to do a run after compiling with each compiler on top of confirming the output and running the uninitialized variable test manually. Because the last commit fixed the 2nd value of the rhs array the change will be BIT_CHANGING, but the plot output is identical for all but the most sensitive cases. clubb:ticket:834", "paths" : [ { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90", "diffusion.F90", "stats_clubb_utilities.F90", "advance_windm_edsclrm_module.F90", "turbulent_adv_pdf.F90", "mean_adv.F90" ], "commitId" : "2186e361695511d0e57bd728903ffddb7a7ada18", "timestamp" : 1533673761000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Optimized the array setup procedures within advance_xp2_xpyp. Added more functions which handle entire arrays at a time rather than single terms to calculate the turbulence, mean advection, and diffusion terms. Because these changes reordered some calculations the results are BIT_CHANGING, but the plots are the same for all but the most sensitive cases. clubb:ticket:834\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8761 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: e04c8b4d12c19f275a7ffb2c48ca2b0cd1a32539\u000a", "date" : "2018-08-07 20:29:21 +0000", "id" : "2186e361695511d0e57bd728903ffddb7a7ada18", "msg" : "Optimized the array setup procedures within advance_xp2_xpyp. Added more functions which handle entire arrays at a time rather than single terms to calculate the turbulence, mean advection, and diffusion terms. Because these changes reordered some calculations the results are BIT_CHANGING, but the plots are the same for all but the most sensitive cases. clubb:ticket:834", "paths" : [ { "editType" : "edit", "file" : "mean_adv.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "diffusion.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "turbulent_adv_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_clubb_utilities.F90" ], "commitId" : "2527ef4247d172eeea40ec4e8502a62a3ea67e05", "timestamp" : 1533673810000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Reverted stats_clubb_utilities, accidental commit\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8762 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c1854eb8cedabd6dc0776b86313ed70f8c5c5ee8\u000a", "date" : "2018-08-07 20:30:10 +0000", "id" : "2527ef4247d172eeea40ec4e8502a62a3ea67e05", "msg" : "Reverted stats_clubb_utilities, accidental commit", "paths" : [ { "editType" : "edit", "file" : "stats_clubb_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_windm_edsclrm_module.F90" ], "commitId" : "6e57d219689d582e8d25d0213163984dd64d28c9", "timestamp" : 1533777712000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "This should fix the nightly budget test. We may want to look into reducing the redone calculations for the stats code in the future, this lhs/rhs improving endeavour is definitely helping with that but more could be done. clubb:ticket:834 clubb:ticket:837\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8763 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 989d179f909385c13ff929975318299b4e86f409\u000a", "date" : "2018-08-09 01:21:52 +0000", "id" : "6e57d219689d582e8d25d0213163984dd64d28c9", "msg" : "This should fix the nightly budget test. We may want to look into reducing the redone calculations for the stats code in the future, this lhs/rhs improving endeavour is definitely helping with that but more could be done. clubb:ticket:834 clubb:ticket:837", "paths" : [ { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "parameter_indices.F90", "clubb_api_module.F90", "stats_variables.F90", "parameters_tunable.F90", "stats_zm_module.F90", "surface_varnce_module.F90", "advance_helper_module.F90" ], "commitId" : "29ebdfcb8332dbe0cc4c3bc884b831c5752dc367", "timestamp" : 1533830141000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "\u000aThis commit adds splatting terms to the wp2, up2, and vp2 equations.\u000aA tuning parameter, C_wp2_splat, has been added, as well as budget term stats.\u000aHowever, C_wp2_splat still needs to be added to the error.in files.\u000aIn addition, no splatting effect has been added to the wp3 equation yet. \u000a\u000aThis commit is BIT_CHANGING, but only because new budget terms have been\u000aadded to the zm stats. The results are identical because the value of the tuning\u000aparameter C_wp2_splat has been set to zero. I spot checked the \u000aoutput from arm_zt.nc, and it was identical to the prior revision\u000aexcept for the inclusion of C_wp2_splat in the new .nc file.\u000aAlso, the plots looked identical for the priority cases, even \u000athe sensitive cases like arm_97.\u000a\u000aFor clubb:ticket:832.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8765 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: f8b5de7f54101ada0a8d95a5d5dc55760030b464\u000a", "date" : "2018-08-09 15:55:41 +0000", "id" : "29ebdfcb8332dbe0cc4c3bc884b831c5752dc367", "msg" : "", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "surface_varnce_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90", "mean_adv.F90" ], "commitId" : "934865a509b3b821c1fd3ba8519456bcc069fbb8", "timestamp" : 1533947805000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Impoved the computational efficiency of xm_wpxp_rhs and xm_wpxp_lhs, see clubb:ticket:834\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8767 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 090ab653a2e793683920a8a0efc7b22cb5a7ed82\u000a", "date" : "2018-08-11 00:36:45 +0000", "id" : "934865a509b3b821c1fd3ba8519456bcc069fbb8", "msg" : "Impoved the computational efficiency of xm_wpxp_rhs and xm_wpxp_lhs, see clubb:ticket:834", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "mean_adv.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "parameters_tunable.F90", "stats_variables.F90", "advance_clubb_core_module.F90", "advance_helper_module.F90", "stats_zt_module.F90" ], "commitId" : "39398fe6f19281b12245d9ff9bcd16468f60d44d", "timestamp" : 1534028076000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "This commit implements the effects of splatting on wp3.\u000aSplatting diminishes wp3 by reducing both vertical motions\u000aand skewness near inversions and the ground surface. \u000a\u000aThis commit adds a new term to the wp3 budget, wp3_splat,\u000aand hence is BIT_CHANGING. However, otherwise, the results\u000aappear to be bit-for-bit identical; at least, they are for the\u000aarm_zt.nc file. \u000a\u000aFor clubb:ticket:832.\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8769 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 9e1536d8bc22fe532acc78067afa1e35b1c3324f\u000a", "date" : "2018-08-11 22:54:36 +0000", "id" : "39398fe6f19281b12245d9ff9bcd16468f60d44d", "msg" : "This commit implements the effects of splatting on wp3.", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90", "advance_windm_edsclrm_module.F90" ], "commitId" : "16b36fb205bdfc55659c1204a4be16b4258c8dc8", "timestamp" : 1534219811000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am making the first step toward committing code that allows for the option\u000aof advancing um/upwp and vm/vpwp along with xm/wpxp variables. I have added\u000athe l_predict_upwp_vpwp flag and I have modified subroutine\u000aadvance_windm_edsclrm appropriately. Results in GrADS output files from this\u000arevision are an exact match to results in GrADS output files from the previous\u000arevision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8771 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: c1cb950ae77d865b0e96535a06c49a4c67b95aff\u000a", "date" : "2018-08-14 04:10:11 +0000", "id" : "16b36fb205bdfc55659c1204a4be16b4258c8dc8", "msg" : "I am making the first step toward committing code that allows for the option", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "c7c4a8728f3beb30a09a265911580c71a5b3303b", "timestamp" : 1534222811000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added code to allow the option of predicting upwp and vpwp by using the\u000aadvance_xm_wpxp code to predict um and upwp, as well as vm and vpwp, alongside\u000athe advancement of other xm and wpxp variables. The option to do this is\u000acontrolled by the l_predict_upwp_vpwp flag. When the flag is turned off (which\u000ait currently is), the traditional code in advance_windm_edsclrm is used for um,\u000avm, upwp, and vpwp.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8772 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 6c5845b594ec8f0221ec8b931f624d3a64efe030\u000a", "date" : "2018-08-14 05:00:11 +0000", "id" : "c7c4a8728f3beb30a09a265911580c71a5b3303b", "msg" : "I added code to allow the option of predicting upwp and vpwp by using the", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_utilities.F90", "new_tsdadg_pdf.F90", "advance_clubb_core_module.F90", "LY93_pdf.F90", "numerical_check.F90", "pdf_closure_module.F90", "adg1_adg2_3d_luhar_pdf.F90", "calc_roots.F90", "new_pdf.F90", "new_pdf_main.F90" ], "commitId" : "5f3450b73aa08a477fab3fe1c06e3b2eedcfdf18", "timestamp" : 1534270528000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I took the liberty of upgrading CLUBB's PDF closure and related code to a vector\u000aarray rather than a loop over PDF closure over all vertical levels. The\u000amajority of the changes were simply promoting single-value variables to vector\u000aarray variables and changing vertical-level-dependent \"if\" statements to \"where\"\u000astatements. Otherwise, var_1 = C * var_2 * var_3 works for both single-value\u000avariables and vector array variables.\u000a\u000aThe results in GrADS output files from the current revision were an exact match\u000ato the results in GRADS output files from the previous revision for all cases\u000awhen optimization (for gfortran) was set to -O0 for both the previous revision\u000aand the current revision. Likewise, the results in GrADS output files from the\u000acurrent revision were an exact match to the results in GrADS output files from\u000athe previous revision for all cases when optimization (for gfortran) was set to\u000a-O1 for both the previous revision and the current revision.\u000a\u000aHowever, when optimization (for gfortran) was set to the default value of -O2,\u000athe results are not an exact match between the previous and current versions.\u000aSome property of vectorizing the code must cause differences when optimization\u000ais set higher (-O2 or -O3). This makes this revision BIT_CHANGING.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8773 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 34d66b14aafa808a28970d51c0f54d43e8654f1f\u000a", "date" : "2018-08-14 18:15:28 +0000", "id" : "5f3450b73aa08a477fab3fe1c06e3b2eedcfdf18", "msg" : "I took the liberty of upgrading CLUBB's PDF closure and related code to a vector", "paths" : [ { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "new_pdf.F90" }, { "editType" : "edit", "file" : "numerical_check.F90" }, { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "pdf_utilities.F90" }, { "editType" : "edit", "file" : "LY93_pdf.F90" }, { "editType" : "edit", "file" : "calc_roots.F90" }, { "editType" : "edit", "file" : "new_tsdadg_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mono_flux_limiter.F90" ], "commitId" : "d06277e3aa5630a079c12066c053c590b07407c4", "timestamp" : 1534278304000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the monotonic flux limiter to account for vector variables u and v.\u000aThe monotonic flux limiter can now be used with um/upwp and vm/vpwp. Compared\u000ato previous results with l_predict_upwp_vpwp turned on and the call to the\u000amonotonic flux limiter omitted for um/upwp and vm/vpwp, the results are an exact\u000amatch for all cases except ATEX, CGILS S6, CGILS S11, CGILS S12, and MC3E.\u000a\u000aThe l_predict_upwp_vpwp flag is still turned off, so default CLUBB results\u000aremain the same as the previous version.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8774 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 863243836db1aa00e0e247647ab808ea9462c1c2\u000a", "date" : "2018-08-14 20:25:04 +0000", "id" : "d06277e3aa5630a079c12066c053c590b07407c4", "msg" : "I updated the monotonic flux limiter to account for vector variables u and v.", "paths" : [ { "editType" : "edit", "file" : "mono_flux_limiter.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "advance_clubb_core_module.F90", "stats_zt_module.F90" ], "commitId" : "1712c2ec43aed1ce5db0776585a6fe8ecafaaddd", "timestamp" : 1534282717000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding two new budget stats, um_mfl and vm_mfl, to CLUBB's zt stats output.\u000aI also made small corrections to the upwp and vpwp clipping numbers and I\u000aintroduced error checking so that l_predict_upwp_vpwp can only currently be used\u000awith ADG1 and with implicit turbulent advection.\u000a\u000aSince new stats have been added to the zt file, this revision is BIT_CHANGING.\u000aHowever, only the zt stats output files are changed. The remaining stats output\u000afiles from this revision are an exact match to the previous revision for all\u000acases.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8775 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 4b307e4c38a33dedfd187e2bd134de4c5dac6bb0\u000a", "date" : "2018-08-14 21:38:37 +0000", "id" : "1712c2ec43aed1ce5db0776585a6fe8ecafaaddd", "msg" : "I am adding two new budget stats, um_mfl and vm_mfl, to CLUBB's zt stats output.", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mono_flux_limiter.F90" ], "commitId" : "e332712a0fa6b7e7c8ec53707e7d36abadf62407", "timestamp" : 1534282930000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "In r8775, I forgot to add the new um_mfl and vm_mfl stats to the monotonic flux\u000alimiter.\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8776 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 3bb8862710542400fad91e2e495e4c9358f91496\u000a", "date" : "2018-08-14 21:42:10 +0000", "id" : "e332712a0fa6b7e7c8ec53707e7d36abadf62407", "msg" : "In r8775, I forgot to add the new um_mfl and vm_mfl stats to the monotonic flux", "paths" : [ { "editType" : "edit", "file" : "mono_flux_limiter.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "667c9ea18924393a999502f05d11138850316c1d", "timestamp" : 1534285132000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am turning on the l_predict_upwp_vpwp code!\u000a\u000aThis revision is BIT_CHANGING, in the best way possible!\u000a\u000a\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8778 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: fbf124c85d68eda019777aac6790e369e30e829c\u000a", "date" : "2018-08-14 22:18:52 +0000", "id" : "667c9ea18924393a999502f05d11138850316c1d", "msg" : "I am turning on the l_predict_upwp_vpwp code!", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90" ], "commitId" : "7bdde8bb98e39e33f8c1e0b1beb57ddaf50d4dcd", "timestamp" : 1534366437000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Improved the computational efficiency of the LHS and RHS setup procedures in advance_wp2_wp3_module. This involved changing the order of calculations which casues this commit to be BIT_CHANGING for only the most sensitive cases. See clubb:ticket:834\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8780 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: 52dc00a1ac3994ccf521d693f0625dee06aa6242\u000a", "date" : "2018-08-15 20:53:57 +0000", "id" : "7bdde8bb98e39e33f8c1e0b1beb57ddaf50d4dcd", "msg" : "Improved the computational efficiency of the LHS and RHS setup procedures in advance_wp2_wp3_module. This involved changing the order of calculations which casues this commit to be BIT_CHANGING for only the most sensitive cases. See clubb:ticket:834", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_windm_edsclrm_module.F90" ], "commitId" : "a62d534df9295f8929a7966f6742f1bb5fbc226b", "timestamp" : 1534370242000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Improved computational efficiency of windm_edsclr_lhs. See clubb:ticket:834\u000a\u000agit-svn-id: file:///usr/local/src/svnroot/clubb_repos/trunk@8781 f1ce5500-ea2b-45e0-a110-28dffb978352\u000a\u000aFormer-commit-id: b30e9584d2828083fc42dd3580ca6438667216c2\u000a", "date" : "2018-08-15 21:57:22 +0000", "id" : "a62d534df9295f8929a7966f6742f1bb5fbc226b", "msg" : "Improved computational efficiency of windm_edsclr_lhs. 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This is for #835 in CLUBB GIT Issues.\u000a", "date" : "2018-08-28 11:22:20 -0500", "id" : "b6174f642f2043d29a8380a5093d18b7a8438051", "msg" : "I am changing the default setting of flags l_min_wp2_from_corr_wx and", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_helper_module.F90" ], "commitId" : "26007da2390b402bded083d130374840ca0c354c", "timestamp" : 1535582510000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Modified compute_Cx_fnc_Richardson. Made it a subroutine, modified the algorithm slightly, removed use of allocates and deallocates from it, removed verical_avg call to avoid redoing calculations and precalculated some divides. 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Also this commit is BIT_CHANGING since it reorders some calculations, but the difference only affects the most sensitive cases.\u000a", "date" : "2018-08-29 18:32:08 -0500", "id" : "25761f981a2c0900733322ee3e3c70342e8cbdb4", "msg" : "Removed print line. Also this commit is BIT_CHANGING since it reorders some calculations, but the difference only affects the most sensitive cases.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_parameter_module.F90", "pdf_closure_module.F90" ], "commitId" : "72b36ee56fd04d6703723b2a64e1997c16609197", "timestamp" : 1535591224000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changed the way that init_pdf_params zeros out values as well as a spot in pdf_closure which does the same type of thing. Also changed the debug level for pdf_closure_check to 2. This all saved about 3% overall. see clubb issue 834\u000a", "date" : "2018-08-29 20:07:04 -0500", "id" : "72b36ee56fd04d6703723b2a64e1997c16609197", "msg" : "Changed the way that init_pdf_params zeros out values as well as a spot in pdf_closure which does the same type of thing. Also changed the debug level for pdf_closure_check to 2. This all saved about 3% overall. see clubb issue 834", "paths" : [ { "editType" : "edit", "file" : "pdf_parameter_module.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "stats_variables.F90", "stats_zm_module.F90", "clip_explicit.F90", "advance_xm_wpxp_module.F90", "mono_flux_limiter.F90" ], "commitId" : "8d6e9153ccb95af59afbcd9fad0e0b4258801ccf", "timestamp" : 1535655087000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/griffinb", "fullName" : "Brian Griffin" }, "authorEmail" : "griffinb@brock.math.uwm.edu", "comment" : "I am adding source code for the introduction of budgets for predictive upwp\u000aand vpwp. This is the first commit of a two-stage commit.\u000a", "date" : "2018-08-30 13:51:27 -0500", "id" : "8d6e9153ccb95af59afbcd9fad0e0b4258801ccf", "msg" : "I am adding source code for the introduction of budgets for predictive upwp", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clip_explicit.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "mono_flux_limiter.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90" ], "commitId" : "8b6e616a45f804c498d3ce6ac4a802b30fffbab8", "timestamp" : 1535671998000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Improved computational speed of compute mixing length by modiying the algorithm slightly, avoiding unnecessary divides, and precalculating values. This saves about 6.5% overall. #834\u000a", "date" : "2018-08-30 18:33:18 -0500", "id" : "8b6e616a45f804c498d3ce6ac4a802b30fffbab8", "msg" : "Improved computational speed of compute mixing length by modiying the algorithm slightly, avoiding unnecessary divides, and precalculating values. This saves about 6.5% overall. #834", "paths" : [ { "editType" : "edit", "file" : "mixing_length.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "lapack_wrap.F90" ], "commitId" : "85d980ead9d6e04b380fb326fcd63a72d09ac750", "timestamp" : 1535676996000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Improved computational efficiency of band_solve by reworking the way that the lulhs matrix is set up. #834\u000a", "date" : "2018-08-30 19:56:36 -0500", "id" : "85d980ead9d6e04b380fb326fcd63a72d09ac750", "msg" : "Improved computational efficiency of band_solve by reworking the way that the lulhs matrix is set up. #834", "paths" : [ { "editType" : "edit", "file" : "lapack_wrap.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "saturation.F90" ], "commitId" : "2b2c9519389dab1529f1ac5fea57ceb6157f902f", "timestamp" : 1535753136000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Modified flatau equation which calculates saturation vapor pressure. This was done by modifying the form of the polynomial to allow the cpu to take advantage of out-of-order computations. The new coefficients were obtainted from matlab by finding the roots and multiplying/adding them where I needed to removed the complex numbers. The differences in any values are negligible, and the plots are only affected in the most sensitive cases, but this is BIT_CHANGING. #834\u000a", "date" : "2018-08-31 17:05:36 -0500", "id" : "2b2c9519389dab1529f1ac5fea57ceb6157f902f", "msg" : "Modified flatau equation which calculates saturation vapor pressure. This was done by modifying the form of the polynomial to allow the cpu to take advantage of out-of-order computations. The new coefficients were obtainted from matlab by finding the roots and multiplying/adding them where I needed to removed the complex numbers. The differences in any values are negligible, and the plots are only affected in the most sensitive cases, but this is BIT_CHANGING. #834", "paths" : [ { "editType" : "edit", "file" : "saturation.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "grid_class.F90" ], "commitId" : "4a6c2943cad5ec872cc9459201436bc7fc562d6d", "timestamp" : 1535757226000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Copied code from linear_interp_factor to linear_interpolated_azt/_azm. This allows those sections of code to become vectorized. Also reversed the calculation order of linear_interpolated_azt allowing for contiguous memory access. This saves about 3% overall and there are no visible differences in the plots when compared to last commit. #834\u000a", "date" : "2018-08-31 18:13:46 -0500", "id" : "4a6c2943cad5ec872cc9459201436bc7fc562d6d", "msg" : "Copied code from linear_interp_factor to linear_interpolated_azt/_azm. This allows those sections of code to become vectorized. Also reversed the calculation order of linear_interpolated_azt allowing for contiguous memory access. This saves about 3% overall and there are no visible differences in the plots when compared to last commit. #834", "paths" : [ { "editType" : "edit", "file" : "grid_class.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "fill_holes.F90", "stats_clubb_utilities.F90", "advance_clubb_core_module.F90", "clubb_api_module.F90", "mono_flux_limiter.F90" ], "commitId" : "a7117763631381c34ab604941651b72b1c7a9b69", "timestamp" : 1535760872000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changed vertical_avg and vertical_intergral to use dz rather than the inverse, they were dividing by an inverse and divisions are expensive. Also modified vertical_avg algorithm to no longer use vertical_integral, this saves some calculations. #834\u000a", "date" : "2018-08-31 19:14:32 -0500", "id" : "a7117763631381c34ab604941651b72b1c7a9b69", "msg" : "Changed vertical_avg and vertical_intergral to use dz rather than the inverse, they were dividing by an inverse and divisions are expensive. Also modified vertical_avg algorithm to no longer use vertical_integral, this saves some calculations. #834", "paths" : [ { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "fill_holes.F90" }, { "editType" : "edit", "file" : "mono_flux_limiter.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clip_explicit.F90" ], "commitId" : "647260c7c91d494a968c69c0ed377a322c257cd8", "timestamp" : 1536110946000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Improved efficiency of clip_covar. The only change is saving the result of max_mag_corr * sqrt( xp2(k) * yp2(k) ) rather than calculating it three times. #834\u000a", "date" : "2018-09-04 20:29:06 -0500", "id" : "647260c7c91d494a968c69c0ed377a322c257cd8", "msg" : "Improved efficiency of clip_covar. The only change is saving the result of max_mag_corr * sqrt( xp2(k) * yp2(k) ) rather than calculating it three times. #834", "paths" : [ { "editType" : "edit", "file" : "clip_explicit.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "surface_varnce_module.F90" ], "commitId" : "8a9a8dd41a238142d1e2f7543fa5b831f004ec33", "timestamp" : 1536871092000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I made the surface splatting terms conservative. That is, I subtracted from wp2_sfc\u000awhen splatting adds to up2_sfc and vp2_sfc, in such a way that the sum is unchanged.\u000aTo avoid temporal noise, I needed to preserve the realizability of wpthlp_sfc and wprtp_sfc,\u000arather than allowing wp2_sfc to be clipped all the way down to w_tol_sqd.\u000a\u000aBecause I added clipping on thlp2_sfc and rtp2_sfc, this commit is BIT_CHANGING, but only for the most sensitive cases.\u000a\u000aFor #832.\u000a", "date" : "2018-09-13 15:38:12 -0500", "id" : "8a9a8dd41a238142d1e2f7543fa5b831f004ec33", "msg" : "I made the surface splatting terms conservative. That is, I subtracted from wp2_sfc", "paths" : [ { "editType" : "edit", "file" : "surface_varnce_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "523ca23a88a67377b230620f84357d520aa6d904", "timestamp" : 1537204202000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I added clipping on up2 and vp2 that prevents these fields from exceeding 1000 m^2/s^2.\u000aThe same sort of clipping already exists for wp2.\u000aWith the splatting terms active, I found a configuration of twp_ice where the clipping on up2 and vp2 is useful.\u000a\u000aHowever, in the standard configuration, none of the priority cases changes answers because none have up2 and vp2 > 1000.\u000a\u000aFor #832.\u000a", "date" : "2018-09-17 12:10:02 -0500", "id" : "523ca23a88a67377b230620f84357d520aa6d904", "msg" : "I added clipping on up2 and vp2 that prevents these fields from exceeding 1000 m^2/s^2.", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "surface_varnce_module.F90", "advance_helper_module.F90", "lapack_wrap.F90" ], "commitId" : "64a6fbc07bc7798dd63cd7fcad47f30a660f315b", "timestamp" : 1537543324000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "This commit turns on splatting of thermals (i.e., C_wp2_splat is nonzero). Hence it is BIT_CHANGING.\u000a\u000aTo prevent noise in the vertical profiles, the splatting terms needed to be clipped.\u000aUnfortunately, this will introduce some undesired dependence on time step.\u000aAt some point, we may wish to treat the splatting terms in a semi-implicit way.\u000a\u000aTo make the splatting terms more effective, the return-to-isotropy coefficient (C4)\u000ahas been reduced. This puts it more in accord with standard values, and it\u000aallows CLUBB to be more anisotropic. Other coefficients were also retuned.\u000a\u000aAlong the way, I broke up some comment lines to avoid a warning about line length.\u000aAlso, I commented out the check on the presence of the Id tag. That tag is no longer\u000auseful because CLUBB has moved from svn to git.\u000a\u000aFor #832.\u000a", "date" : "2018-09-21 10:22:04 -0500", "id" : "64a6fbc07bc7798dd63cd7fcad47f30a660f315b", "msg" : "This commit turns on splatting of thermals (i.e., C_wp2_splat is nonzero). Hence it is BIT_CHANGING.", "paths" : [ { "editType" : "edit", "file" : "surface_varnce_module.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "lapack_wrap.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90", "constants_clubb.F90" ], "commitId" : "f61d9953e79775fa70f6083e07c962aefc645942", "timestamp" : 1537562375000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Added functionality to allow cloud_frac to be better estimated at extreme values which produce either 0 or 1 when computed. The amount of estimation is controlled by the variable max_num_stdevs, indicating the number of standard deviations away from the mean of a pdf a value can be before being considered statistically insignificant. This speeds up the code but reducing the calculations required in calc_cloud_frac_component and calc_xprcp_component, and avoiding underflow errors when computing exponentials with too small of a number. By comparing plots and mathematical evaluation (erf(5)~=0), it seems the best value for max_num_stdevs is 5. This increases computational efficiency by about 10% #834\u000a", "date" : "2018-09-21 15:39:35 -0500", "id" : "f61d9953e79775fa70f6083e07c962aefc645942", "msg" : "Added functionality to allow cloud_frac to be better estimated at extreme values which produce either 0 or 1 when computed. The amount of estimation is controlled by the variable max_num_stdevs, indicating the number of standard deviations away from the mean of a pdf a value can be before being considered statistically insignificant. This speeds up the code but reducing the calculations required in calc_cloud_frac_component and calc_xprcp_component, and avoiding underflow errors when computing exponentials with too small of a number. By comparing plots and mathematical evaluation (erf(5)~=0), it seems the best value for max_num_stdevs is 5. This increases computational efficiency by about 10% #834", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "constants_clubb.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "e6ef3b8923f3641f496708629e6fd0239b3ea160", "timestamp" : 1537823184000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update advance_clubb_core_module.F90\u000a\u000aI neatened and/or elaborated comments on the inputs and outputs of advance_clubb_core.\u000a", "date" : "2018-09-24 16:06:24 -0500", "id" : "e6ef3b8923f3641f496708629e6fd0239b3ea160", "msg" : "Update advance_clubb_core_module.F90", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "f28cdc7db7c73dde06d0de691ed5dc78302a2e32", "timestamp" : 1538943429000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I clipped sigma_sqd_w to prevent interpolated values of it\u000afrom going negative. This avoids crashes in the\u000alba, twp_ice, and mc3e cases when l_call_pdf_closure_twice = .true.\u000aSmall negative values in sigma_sqd_w were causing small negative values\u000aof varnce_w_1 and varnce_w_2 at the lowest grid level,\u000awhich then caused floating point exceptions in the pdf closure.\u000al_call_pdf_closure_twice = .true. is not the default setting,\u000abut it is the setting in CAM6. Hopefully this code change\u000awill help allow the new version of CLUBB to be backwards-compatible\u000awith the CAM6 version.\u000a\u000aA few numbers in the output did change in the last digit or two\u000ain the arm_97 case. Maybe it was only sigma_sqd_w itself\u000athat was changing, and that value wasn't used anywhere?\u000aAnyway, technically, this commit is BIT_CHANGING.\u000a\u000aFor issue larson-group/cam#116.\u000a", "date" : "2018-10-07 15:17:09 -0500", "id" : "f28cdc7db7c73dde06d0de691ed5dc78302a2e32", "msg" : "I clipped sigma_sqd_w to prevent interpolated values of it", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90" ], "commitId" : "fe9d81553653c1039c48f6732dfb3ccfae53cb80", "timestamp" : 1539710115000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I added a new option to diagnose the dissipation time scale, tau, first\u000aand then use it to diagnose the mixing length, Lscale, as Lscale = tau * tke.\u000aThe purpose is twofold: 1) reduce computational expense of computing Lscale;\u000aand 2) increase tau near the ocean surface, in the hopes of improving\u000ahurricane surface winds.\u000a\u000aThe option is currently turned off with the flag l_diag_Lscale_from_tau,\u000aand so the results are an exact match to those produced by the prior code.\u000a\u000aFor #842.\u000a", "date" : "2018-10-16 12:15:15 -0500", "id" : "fe9d81553653c1039c48f6732dfb3ccfae53cb80", "msg" : "I added a new option to diagnose the dissipation time scale, tau, first", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "6fbc9a4abf9ae6aba74d7c54e40c6a6b03031ea7", "timestamp" : 1541017963000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I found a new way to diagnose upthvp. Instead of using a bound on correlations, it relies\u000aon the formula upthvp = upthlp + 200 K uprtp + 2000 K uprcp.\u000aupthlp and uprtp are then diagnosed based on a budget equation from Andre et al.\u000aThe new formula produces more upthvp aloft, where upwp is small.\u000aThe budget of upwp for the BOMEX case looks plausible.\u000a\u000aI also discovered that when upthvp is better diagnosed, then the upwp_pr4 term is unnecessary.\u000aSo I zeroed it out for now.\u000a\u000aFor #841.\u000a", "date" : "2018-10-31 15:32:43 -0500", "id" : "6fbc9a4abf9ae6aba74d7c54e40c6a6b03031ea7", "msg" : "I found a new way to diagnose upthvp. Instead of using a bound on correlations, it relies", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "970984d58351c5682e819dc42b48d4824bacc67b", "timestamp" : 1541777541000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/mcfadd34", "fullName" : "mcfadd34" }, "authorEmail" : "mcfadd34@uwm.edu", "comment" : "introducing error into clubb core for testing larson-group/sys_admin#533\u000a", "date" : "2018-11-09 09:32:21 -0600", "id" : "970984d58351c5682e819dc42b48d4824bacc67b", "msg" : "introducing error into clubb core for testing larson-group/sys_admin#533", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "ab452aecedc7073f07314bdc6b068de879727ae6", "timestamp" : 1541788295000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/mcfadd34", "fullName" : "mcfadd34" }, "authorEmail" : "mcfadd34@uwm.edu", "comment" : "reverting error that was introduced larson-group/sys_admin#533\u000a", "date" : "2018-11-09 12:31:35 -0600", "id" : "ab452aecedc7073f07314bdc6b068de879727ae6", "msg" : "reverting error that was introduced larson-group/sys_admin#533", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "model_flags.F90" ], "commitId" : "fd04a5135f41fc7ba52f9012aa2864357fb965f0", "timestamp" : 1542138244000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am briefly changing some of the flag and parameter settings in CLUBB\u000ato match what is currently used by CAM. This change will be undone\u000awith the next trunk (master) commit.\u000a", "date" : "2018-11-13 13:44:04 -0600", "id" : "fd04a5135f41fc7ba52f9012aa2864357fb965f0", "msg" : "I am briefly changing some of the flag and parameter settings in CLUBB", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "model_flags.F90" ], "commitId" : "9a2cfb9ac48201c27fe347841ab5cb5f38551c21", "timestamp" : 1542139368000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Revert \"I am briefly changing some of the flag and parameter settings in CLUBB\"\u000a\u000aThis reverts commit adc5247053fe1bb22a8e73f747a39ed9d467d3fd.\u000a", "date" : "2018-11-13 14:02:48 -0600", "id" : "9a2cfb9ac48201c27fe347841ab5cb5f38551c21", "msg" : "Revert \"I am briefly changing some of the flag and parameter settings in CLUBB\"", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "8b4636b0b9ba044518efadf97f44604fb52658e4", "timestamp" : 1542840937000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a couple of comments reminding users to change the conditions in\u000athe SILHS check if the conditions change in the calculation of cloud\u000afraction in PDF closure.\u000a", "date" : "2018-11-21 16:55:37 -0600", "id" : "8b4636b0b9ba044518efadf97f44604fb52658e4", "msg" : "I added a couple of comments reminding users to change the conditions in", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "model_flags.F90" ], "commitId" : "37c8f1b5b614f57901e66d7ee8e6e07d09c57c54", "timestamp" : 1544053895000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Revert \"Revert \"I am briefly changing some of the flag and parameter settings in CLUBB\"\"\u000a\u000aThis reverts commit 7e8b4f7f20f25bccdbcaca0fccb970d793518133.\u000a\u000aI am briefly re-setting the CAM-specific flag and parameter settings for CLUBB\u000afor use in CAM-CLUBB. I am going to make (another) tag of this revision, and\u000athen again revert this revision.\u000a", "date" : "2018-12-05 17:51:35 -0600", "id" : "37c8f1b5b614f57901e66d7ee8e6e07d09c57c54", "msg" : "Revert \"Revert \"I am briefly changing some of the flag and parameter settings in CLUBB\"\"", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "model_flags.F90" ], "commitId" : "66cc9401b0f477b7d9875c4354ccb97478883487", "timestamp" : 1544054506000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Revert \"Revert \"Revert \"I am briefly changing some of the flag and parameter settings in CLUBB\"\"\"\u000a\u000aThis reverts commit a56d278f12df2c85116c41459bd54c254ee94b62.\u000a\u000aI again reverting back from the flag and parameter settings used in CAM-CLUBB\u000aand returning the CLUBB master to its normal settings.\u000a", "date" : "2018-12-05 18:01:46 -0600", "id" : "66cc9401b0f477b7d9875c4354ccb97478883487", "msg" : "Revert \"Revert \"Revert \"I am briefly changing some of the flag and parameter settings in CLUBB\"\"\"", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "stats_variables.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "4c7b25bb90d21e435fd03474d328228fc11d097b", "timestamp" : 1545156359000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I committed a subroutine, diagnose_upxp, that calculates\u000aupthlp, uprtp, vpthlp, vprtp using a simple diagnostic version\u000aof Eqn. 7 of Andre et al. (1978). Ultimately, CLUBB will use\u000athis in order to compute the buoyancy terms in the upwp and vpwp budgets.\u000a\u000aThe results match the prior repo results bit for bit\u000aif, in the prior code, I pull tau_C6_zm inside\u000athe parentheses in the prior calculation of upthlp and uprtp:\u000aupthvp = - 0.3_core_rknd * tau_C6_zm * ( upwp * ddzt( thlm ) + wpthlp * ddzt( um ) &\u000a + 200.0_core_rknd * ( upwp * ddzt( rtm ) + wprtp * ddzt( um ) ) ) &\u000aThis is needed to avoid a change in the order of operations, which changes\u000athe results in IEEE arithmetic. I also need to set C6=1 and C7=0 in\u000asubroutine diagnose_upxp.\u000a\u000aHowever, what I am committing includes C6 and C7 in subroutine diagnose_upxp.\u000aIt doesn't change the results much, but nevertheless the results are BIT_CHANGING.\u000aIn addition, four new stats are added to all_stats.in and standard_stats.in:\u000aupthlp, uprtp, vpthlp, and vprtp.\u000a\u000aFor #841.\u000a", "date" : "2018-12-18 12:05:59 -0600", "id" : "4c7b25bb90d21e435fd03474d328228fc11d097b", "msg" : "I committed a subroutine, diagnose_upxp, that calculates", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "6edf0adb68cffee7a4ee15a75bdbedac20d2d42e", "timestamp" : 1545352741000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@mitch.math.uwm.edu", "comment" : "Improved the computational efficiency of pdf_closure. This speed the code up by about 6% overall. Because it changed the order of some calculations it is BIT_CHANGING but does not change plots. clubb issue #834\u000a", "date" : "2018-12-20 18:39:01 -0600", "id" : "6edf0adb68cffee7a4ee15a75bdbedac20d2d42e", "msg" : "Improved the computational efficiency of pdf_closure. This speed the code up by about 6% overall. Because it changed the order of some calculations it is BIT_CHANGING but does not change plots. clubb issue #834", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "ec1fb66c9630d79bc710eeca12df3716ba7b534d", "timestamp" : 1545526862000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am modifying one part of setup_clubb_pdf_params.F90 to be taken out of a large\u000aouter \"do\" loop over all vertical level, and instead, promote single-level\u000avariable declarations to arrays and use where...elsewhere statements rather than\u000aelse...elseif statments. The part of setup_clubb_pdf_params.F90 that is being\u000amodified is the part of the code that calculates the PDF component (in-precip)\u000ameans and (in-precip) standard deviations of hydrometeor species for the\u000ahydrometeor portion of the PDF. This is being done in an effort to speed up\u000aCLUBB. This does not pertain to CLUBB core, but it does pertain to analytic\u000aKK or SILHS cases.\u000a\u000aWhen the gfortan optimization level is decreased to -O0 or -O1, the results in\u000aGrADS output files from this revision are an exact match to the results in GrADS\u000aoutput files from the previous revision for all cases. When the gfortran\u000aoptimization level is left at the current default of -O2, the results remain an\u000aexact match for many cases, including some that use upscaled KK or SILHS, but\u000aresults change for ARM 97, DYCOMS-II RF02 DO, ASTEX A209, TWP-ICE, and MC3E,\u000awhich tecnically makes this revision BIT_CHANGING.\u000a", "date" : "2018-12-22 19:01:02 -0600", "id" : "ec1fb66c9630d79bc710eeca12df3716ba7b534d", "msg" : "I am modifying one part of setup_clubb_pdf_params.F90 to be taken out of a large", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_utilities.F90", "setup_clubb_pdf_params.F90", "Nc_Ncn_eqns.F90" ], "commitId" : "b19476be5eb8e937f24c39f06a37f3981da45097", "timestamp" : 1546468210000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating the code within setup_clubb_pdf_parameters.F90 in order to take\u000amore code out of the outer loop over all vertical levels and internally promote\u000ascalars to vectors. This is designed to speed up the code for analytic KK or\u000aSILHS runs.\u000a\u000aThe results in GrADS output files from this revision is an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a", "date" : "2019-01-02 16:30:10 -0600", "id" : "b19476be5eb8e937f24c39f06a37f3981da45097", "msg" : "I am updating the code within setup_clubb_pdf_parameters.F90 in order to take", "paths" : [ { "editType" : "edit", "file" : "Nc_Ncn_eqns.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "pdf_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90", "adg1_adg2_3d_luhar_pdf.F90" ], "commitId" : "ae02afd6021e9f3e38b95c203221042af7d87752", "timestamp" : 1546539880000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "To diagnose uprcp using CLUBB's PDF machinery,\u000aI fed some variables related to horizontal wind\u000athrough some argument lists. The code change is incomplete at this point.\u000aThe results do not change because the variables are declared locally in\u000asubroutine pdf_closure, and nothing is done with the output, uprcp.\u000aThe wind variables are not even initialized at this point. Nonetheless,\u000athe results of the arm case are bit-for-bit identical with the prior results.\u000aThe units tests still pass.\u000a\u000aFor #841.\u000a", "date" : "2019-01-03 12:24:40 -0600", "id" : "ae02afd6021e9f3e38b95c203221042af7d87752", "msg" : "To diagnose uprcp using CLUBB's PDF machinery,", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "pdf_closure_module.F90" ], "commitId" : "6873c26df22486e27273dfbdf4f80a09e605082a", "timestamp" : 1546624367000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "Continuing with diagnosis of uprcp using CLUBB's PDF,\u000aI fed the arguments through subroutine pdf_closure.\u000aI have yet to feed them through pdf_closure_driver.\u000aFor the arm case, the results are bit-for-bit identical.\u000a\u000aFor #841.\u000a", "date" : "2019-01-04 11:52:47 -0600", "id" : "6873c26df22486e27273dfbdf4f80a09e605082a", "msg" : "Continuing with diagnosis of uprcp using CLUBB's PDF,", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "d2812cc427f191ac3810fa070100ed0daea03ce9", "timestamp" : 1546711817000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "More code to diagnose uprcp using CLUBB's PDF.\u000aI fed the relevant arguments through pdf_closure_driver\u000aand advance_xm_wpxp. The results are still bit-for-bit identical\u000abecause uprcp does not (yet) interact with the rest of the code.\u000aI put some idiot-proofing in setup_clubb_core because\u000athe arguments have not yet been fed through advance_clubb_core\u000aand preserved from time step to time step.\u000aThe unit tests passed.\u000a\u000aFor #841.\u000a", "date" : "2019-01-05 12:10:17 -0600", "id" : "d2812cc427f191ac3810fa070100ed0daea03ce9", "msg" : "More code to diagnose uprcp using CLUBB's PDF.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "7e26b5bc89f6b289ee3b8037c7aee3fc748ff018", "timestamp" : 1546715059000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "Correction for the last uprcp-related commit:\u000auprcp_zt is now interpolated to the zm levels\u000ain the case in which the pdf closure is called\u000aonly once. The answers are still bit-for-bit identical.\u000a\u000aFor #841.\u000a", "date" : "2019-01-05 13:04:19 -0600", "id" : "7e26b5bc89f6b289ee3b8037c7aee3fc748ff018", "msg" : "Correction for the last uprcp-related commit:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_utilities.F90", "Nc_Ncn_eqns.F90" ], "commitId" : "2e9ec3492f275db7e1673a66b31b2dc7e0a1e010", "timestamp" : 1546989949000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am correcting the code so that the Nightly Uninitialized Variables Test\u000a(Oracle Fortran) works correctly again.\u000a\u000aI've noticed that FORTRAN's where statement doesn't always prevent a certain\u000apart of a where ... elsewhere block from being entered in the same way that it\u000aprevents a certain part of an if ... elseif block from being entered. Code that\u000ais not supposed to be entered under certain conditions gets entered and then\u000athe mask is applied later, throwing away the results. However, if the\u000aintrusion causes a floating point exception for whatever reason, the run stops.\u000a\u000aI remember overhearing talk between Gunther and Vince about the where statement\u000a\"guessing\" wrong sometimes. Is there a way to stop it from \"guessing\" wrong\u000aor at least reduce the number of wrong \"guesses\"?\u000a", "date" : "2019-01-08 17:25:49 -0600", "id" : "2e9ec3492f275db7e1673a66b31b2dc7e0a1e010", "msg" : "I am correcting the code so that the Nightly Uninitialized Variables Test", "paths" : [ { "editType" : "edit", "file" : "pdf_utilities.F90" }, { "editType" : "edit", "file" : "Nc_Ncn_eqns.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "559b1e46e16f3fc7c3c426ee68e34c6cc9ec7799", "timestamp" : 1547075606000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am continuing to pull parts of setup_pdf_parameters outside of a large \"do\"\u000aloop over all vertical levels and promote subroutines that are called from\u000asetup_pdf_parameters to cover the whole array of vertical levels, rather than\u000ajust one level at a time. This code change is simply for a statistical output\u000asubroutine (pdf_param_hm_stats) within setup_pdf_parameters. This all is in an\u000aeffort to speed up the code.\u000a\u000aThis revision outputs stats at thermodynamic level 1 (which is below the model\u000asurface), whereas the subroutine wasn't previously called at level 1. This\u000amakes the results BIT_CHANGING, but only for the stats that are output at\u000alevel 1 of the zt output files. The results in other GrADS output files (zm,\u000asfc, etc.) from this revision are an exact match to the results in the same\u000aGrADS output files from the previous revision for all cases.\u000a", "date" : "2019-01-09 17:13:26 -0600", "id" : "559b1e46e16f3fc7c3c426ee68e34c6cc9ec7799", "msg" : "I am continuing to pull parts of setup_pdf_parameters outside of a large \"do\"", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "495d473a8f734fbab6da71b24c0a6ca171aab6d7", "timestamp" : 1547146438000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am pulling statistical output subroutine pdf_param_ln_hm_stats outside\u000aof the large \"do\" loop in setup_pdf_parameters. This is part of a larger\u000acode speed-up effort.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a", "date" : "2019-01-10 12:53:58 -0600", "id" : "495d473a8f734fbab6da71b24c0a6ca171aab6d7", "msg" : "I am pulling statistical output subroutine pdf_param_ln_hm_stats outside", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_utilities.F90" ], "commitId" : "ab433cfbf941bd9b7042f3ca7037e46cfdd3f47d", "timestamp" : 1547252742000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changing the range of the correlation values determined in calc_comp_corrs_binormal from [ -1.0, 1.0 ] to [ -0.99, 0.99 ] (based on value of max_mag_correlation = .99). This is the subroutine that calculates corr_rt_thl_x and should fix the issue with the WRF WPS Katrina bitten test as discussed in the commets of commit ad0ee5b9b3c253329df1208560b46d1dc4fca1c2. I suspect that it will fix the WRF-CLUBB-SILHS Restart Test as well, but I am basing that mostly off hope.\u000a", "date" : "2019-01-11 18:25:42 -0600", "id" : "ab433cfbf941bd9b7042f3ca7037e46cfdd3f47d", "msg" : "Changing the range of the correlation values determined in calc_comp_corrs_binormal from [ -1.0, 1.0 ] to [ -0.99, 0.99 ] (based on value of max_mag_correlation = .99). This is the subroutine that calculates corr_rt_thl_x and should fix the issue with the WRF WPS Katrina bitten test as discussed in the commets of commit ad0ee5b9b3c253329df1208560b46d1dc4fca1c2. I suspect that it will fix the WRF-CLUBB-SILHS Restart Test as well, but I am basing that mostly off hope.", "paths" : [ { "editType" : "edit", "file" : "pdf_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90" ], "commitId" : "460f0559e1c307e6e01794b66d6afc26284eef71", "timestamp" : 1547566530000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/mcfadd34", "fullName" : "mcfadd34" }, "authorEmail" : "mcfadd34@uwm.edu", "comment" : "commenting out threadprivate command to test openmp bitten test larson-group/sys_admin#566\u000a", "date" : "2019-01-15 09:35:30 -0600", "id" : "460f0559e1c307e6e01794b66d6afc26284eef71", "msg" : "commenting out threadprivate command to test openmp bitten test larson-group/sys_admin#566", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90" ], "commitId" : "5659e7c24d5ebc1c52e9d4868aede6f4b8d10623", "timestamp" : 1547569661000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/mcfadd34", "fullName" : "mcfadd34" }, "authorEmail" : "mcfadd34@uwm.edu", "comment" : "uncommenting threadprivate larson-group/sys_admin#566\u000a", "date" : "2019-01-15 10:27:41 -0600", "id" : "5659e7c24d5ebc1c52e9d4868aede6f4b8d10623", "msg" : "uncommenting threadprivate larson-group/sys_admin#566", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "2820b9199e5e5340b41a0331328f091283cc0931", "timestamp" : 1547593831000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have changed the structure of setup_pdf_parameters so that the subroutine that\u000apacks up the hydrometeor PDF parameters, subroutine pack_hydromet_pdf_params,\u000ais called from outside the loop over all vertical levels. Within\u000apack_hydromet_pdf_params, variables have been promoted to arrays over all\u000avertical levels. This leaves the reamining outer loops over all vertical levels\u000ato include only a few subroutines (diagnosing correlations and the Cholesky\u000astuff).\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a", "date" : "2019-01-15 17:10:31 -0600", "id" : "2820b9199e5e5340b41a0331328f091283cc0931", "msg" : "I have changed the structure of setup_pdf_parameters so that the subroutine that", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "79a4333484ac252ffe654daacb9a46593099c6a2", "timestamp" : 1547758965000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Returned max check to the calculation of rcm. This should fix the PGI Compiler Nightly Test and could be BIT_CHANGING.\u000a", "date" : "2019-01-17 15:02:45 -0600", "id" : "79a4333484ac252ffe654daacb9a46593099c6a2", "msg" : "Returned max check to the calculation of rcm. This should fix the PGI Compiler Nightly Test and could be BIT_CHANGING.", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "stats_variables.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "49feb7636991743ae49e11deacc358da1afff9ee", "timestamp" : 1547849925000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I am turning on the new calculation of uprcp that uses CLUBB's PDF.\u000aAlso, I am re-introducing the pressure term upwp_pr4,\u000abecause it is a useful preconditioner for producing an upgradient flux in upwp.\u000aThis commit is BIT_CHANGING both because the answers change and because\u000anew outputs (uprcp, upthvp, ...) are written to disk.\u000aThe gabls3_night case is degraded, but the other cases look comparable\u000aor better than before.\u000a\u000aFor #841.\u000a", "date" : "2019-01-18 16:18:45 -0600", "id" : "49feb7636991743ae49e11deacc358da1afff9ee", "msg" : "I am turning on the new calculation of uprcp that uses CLUBB's PDF.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "4cea0a0f193d06e73a5877c561e63deb709cb782", "timestamp" : 1548367895000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I modified the code in setup_clubb_pdf_params.F90 to use only one call to\u000afunction pdf2hydromet_idx or function hydromet2pdf_idx within a loop, instead of\u000amultiple calls within array indices for different variables. This cuts down on\u000aexcessive calls and also makes the code a little more nicely readable.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a", "date" : "2019-01-24 16:11:35 -0600", "id" : "4cea0a0f193d06e73a5877c561e63deb709cb782", "msg" : "I modified the code in setup_clubb_pdf_params.F90 to use only one call to", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "26acd1f23eba8ae32b195168c32a075c2baa1b46", "timestamp" : 1548854661000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating CLUBB_core and SILHS in the clubb_E3SM_silhs branch to\u000amatch the clubb and silhs directories in the bmg929/atm/clubb_silhs_v2\u000abranch of E3SM. This commit can be considered a list of modifications\u000athat were done to the CLUBB code in the clubb_silhs branch of E3SM.\u000a\u000aIt should be noted that the version of CLUBB used in the clubb-silhs\u000abranches of E3SM is r8220.\u000a\u000aThis commit provides a base to marge up CLUBB and SILHS to more\u000acurrent versions for use in E3SM CLUBB-SILHS.\u000a", "date" : "2019-01-30 07:24:21 -0600", "id" : "26acd1f23eba8ae32b195168c32a075c2baa1b46", "msg" : "I am updating CLUBB_core and SILHS in the clubb_E3SM_silhs branch to", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "model_flags.F90" ], "commitId" : "cd399238c1e54c874b145501fcb815d6e4a2b56d", "timestamp" : 1548869329000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am setting model flags and tunable parameters in the clubb_E3SM_silhs branch\u000ain a backwards-compatible fashion to r8220, which was the version of CLUBB and\u000aSILHS that was previously used in E3SM-CLUBB-SILHS.\u000a", "date" : "2019-01-30 11:28:49 -0600", "id" : "cd399238c1e54c874b145501fcb815d6e4a2b56d", "msg" : "I am setting model flags and tunable parameters in the clubb_E3SM_silhs branch", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "transform_to_pdf_module.F90" ], "commitId" : "f8c3b05eee249e8acb82087135d10a3349180c72", "timestamp" : 1548885592000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I temporarily set l_clip_extreme_chi_sample_pts back to false in the\u000aclubb_E3SM_silhs branch. This is being done to test for backwards compatibility\u000awhile upgrading E3SM-CLUBB-SILHS. The goal is to produce a version of SILHS\u000athat is similar in all ways to the version of SILHS that was found in r8220.\u000a\u000aOnce the merger is complete, this flag will likely be reset back to true.\u000a", "date" : "2019-01-30 15:59:52 -0600", "id" : "f8c3b05eee249e8acb82087135d10a3349180c72", "msg" : "I temporarily set l_clip_extreme_chi_sample_pts back to false in the", "paths" : [ { "editType" : "edit", "file" : "transform_to_pdf_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "transform_to_pdf_module.F90" ], "commitId" : "d0fdb430ac89f446a02c3fc2a04cfeb83bf86103", "timestamp" : 1549729862000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Revert \"I temporarily set l_clip_extreme_chi_sample_pts back to false in the\"\u000a\u000aI am setting l_clip_extreme_chi_sample_pts back to true for use in\u000aE3SM-CLUBB-SILHS.\u000a\u000aThis reverts commit 677c6f9d54ef542325ca3308980c6c22cac6207a.\u000a", "date" : "2019-02-09 08:31:02 -0800", "id" : "d0fdb430ac89f446a02c3fc2a04cfeb83bf86103", "msg" : "Revert \"I temporarily set l_clip_extreme_chi_sample_pts back to false in the\"", "paths" : [ { "editType" : "edit", "file" : "transform_to_pdf_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90", "lapack_wrap.F90" ], "commitId" : "719a2e336400711fd23caf13f000f9b76bc1cbe6", "timestamp" : 1552087005000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I improved the error messages when LU decomp. fails within\u000aadvance_xm_wpxp_module.F90.\u000a", "date" : "2019-03-08 17:16:45 -0600", "id" : "719a2e336400711fd23caf13f000f9b76bc1cbe6", "msg" : "I improved the error messages when LU decomp. fails within", "paths" : [ { "editType" : "edit", "file" : "lapack_wrap.F90" }, 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"bmg2@uwm.edu", "comment" : "I added improved LHS and RHS print statements when a LU decomp. error occurs\u000ain advance_wp2_wp3.\u000a", "date" : "2019-03-13 22:34:38 -0500", "id" : "9ebad48929103e747598b00f2a5e1ca1916d7a2e", "msg" : "I added improved LHS and RHS print statements when a LU decomp. error occurs", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "e89d13da7946db4a7751cacfb92a92f419f268d4", "timestamp" : 1552536682000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added params_list to the list of variables that are accessible through\u000aclubb_api_module.\u000a", "date" : "2019-03-13 23:11:22 -0500", "id" : "e89d13da7946db4a7751cacfb92a92f419f268d4", "msg" : "I added params_list to the list of variables that are accessible through", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "sigma_sqd_w_module.F90" ], "commitId" : "2dcd21b8d1335f13ae48c5e9202048cbdabcd7a3", "timestamp" : 1553795121000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am making the first step for updating the code that calculates sigma_sqd_w.\u000aI have included upwp^2/(up2*wp2) and vpwp^2/(vp2*wp2) in the calculation of\u000athe maximum squared correlation for the limit of sigma_sqd_w when the\u000al_predict_upwp_vpwp flag is enabled.\u000a\u000aWhen the l_predict_upwp_vpwp flag is turned off, the results in GrADS output\u000afiles from this revision are an exact match to the results in GrADS output files\u000afrom the previous revision for all cases.\u000a\u000aWhen the l_predict_upwp_vpwp flag in enabled (which it is by default), this\u000arevision is BIT_CHANGING. However, only a couple of cases show visible changes\u000aon the plots.\u000a\u000aGit Issue Reference: #852.\u000a", "date" : "2019-03-28 12:45:21 -0500", "id" : "2dcd21b8d1335f13ae48c5e9202048cbdabcd7a3", "msg" : "I am making the first step for updating the code that calculates sigma_sqd_w.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "sigma_sqd_w_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "20c0f6ab99737edaa2ba6f320ba059ab7fc3783f", "timestamp" : 1553982073000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I added a log-law height dependence to the code that diagnoses\u000atau directly, rather than diagnosing the mixing length, Lscale\u000a(l_diag_Lscale_from_tau = .true.).\u000aHowever, that option is set to .false. by default, and hence\u000athe nightly test results should be unchanged.\u000a\u000aFor #842.\u000a", "date" : "2019-03-30 16:41:13 -0500", "id" : "20c0f6ab99737edaa2ba6f320ba059ab7fc3783f", "msg" : "I added a log-law height dependence to the code that diagnoses", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "5c39d243769b471253986d92bdfb11d92ae08d5b", "timestamp" : 1556160033000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added fill_holes_hydromet_api to clubb_api_module.F90.\u000a", "date" : "2019-04-24 21:40:33 -0500", "id" : "5c39d243769b471253986d92bdfb11d92ae08d5b", "msg" : "I added fill_holes_hydromet_api to clubb_api_module.F90.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mt95.f90", "stats_variables.F90", "model_flags.F90", "gmres_cache.F90" ], "commitId" : "1dd81aca877e9ea8bfa88c91c46fcf5e61185285", "timestamp" : 1558450464000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I added a new python script, check_for_missing_threadprivate.py,\u000awhich checks whether a module variable\u000ain CLUBB or SILHS has been declared but not designated as a threadprivate.\u000aIn such a case, the variables are not thread safe and different threads\u000amay store a variable in the same memory location, causing errors.\u000aIn particular, such an omission may cause CAM-CLUBB-SILHS to produce\u000adifferent results when different numbers of openmp threads are selected.\u000a\u000aI then added some threadprivate statements in order to make the test pass.\u000a\u000aFor larson-group/cam#121.\u000a", "date" : "2019-05-21 09:54:24 -0500", "id" : "1dd81aca877e9ea8bfa88c91c46fcf5e61185285", "msg" : "I added a new python script, check_for_missing_threadprivate.py,", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "gmres_cache.F90" }, { "editType" : "edit", "file" : "mt95.f90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "clubb_api_module.F90", "numerical_check.F90", "pdf_closure_module.F90", "stats_clubb_utilities.F90", "pdf_parameter_module.F90", "variables_diagnostic_module.F90", "setup_clubb_pdf_params.F90", "variables_prognostic_module.F90" ], "commitId" : "72bfbae28a4d94532738cb031a1a5620caa78e3e", "timestamp" : 1559079583000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Modifying clubb's pdf_parameter type. It's now a type containing arrays, whereas before it was a type containing scalars, but used everywhere as an array of these types. This new way allows the elements of pdf_parameter to exist in contiguous memory sections, which improves computational efficiency when accessing a given parameter over all vertical levels. clubb issue #834\u000a", "date" : "2019-05-28 16:39:43 -0500", "id" : "72bfbae28a4d94532738cb031a1a5620caa78e3e", "msg" : "Modifying clubb's pdf_parameter type. It's now a type containing arrays, whereas before it was a type containing scalars, but used everywhere as an array of these types. 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The pdf_parameter variables are accessed via a use statement in the section of code where the restart run attempts to set their values, but since they are allocatable they do not retain their allocated status once out of scope. Adding the save attribute to pdf_params and pdf_params_zm fixes the problem. These pdf_parameter variables used in clubb standalone are not used by host models, yet they are still allocated during host model runs, something that has been noted before and will be changed. clubb issue #834\u000a", "date" : "2019-05-29 18:49:59 -0500", "id" : "2f805be18b00c5bb0cb7a0fd6133372c91513b96", "msg" : "Fixed dycoms restart run failure. The pdf_parameter variables are accessed via a use statement in the section of code where the restart run attempts to set their values, but since they are allocatable they do not retain their allocated status once out of scope. Adding the save attribute to pdf_params and pdf_params_zm fixes the problem. These pdf_parameter variables used in clubb standalone are not used by host models, yet they are still allocated during host model runs, something that has been noted before and will be changed. clubb issue #834", "paths" : [ { "editType" : "edit", "file" : "variables_diagnostic_module.F90" }, { "editType" : "edit", "file" : "variables_prognostic_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "FileForTestingUpdateScript.txt" ], "commitId" : "fae81b119a174f67903ecdf4a576eb7b83f3a911", "timestamp" : 1559313403000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Added temp test file\u000a\u000aAdding a test file to verify wrf updates are working\u000a", "date" : "2019-05-31 09:36:43 -0500", "id" : "fae81b119a174f67903ecdf4a576eb7b83f3a911", "msg" : "Added temp test file", "paths" : [ { "editType" : "add", "file" : "FileForTestingUpdateScript.txt" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "FileForTestingUpdateScript.txt" ], "commitId" : "cb11bc29e16abcdf34202a84e8c2ea5d7e3afbb1", "timestamp" : 1559313981000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Remove test file\u000a\u000aThe wrf update is working now, no need to keep this file around.\u000a", "date" : "2019-05-31 09:46:21 -0500", "id" : "cb11bc29e16abcdf34202a84e8c2ea5d7e3afbb1", "msg" : "Remove test file", "paths" : [ { "editType" : "delete", "file" : "FileForTestingUpdateScript.txt" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "300de16a3e09fca0d7e720a1e3755832aff3098b", "timestamp" : 1561766277000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding conditional statement around compute_Cx_Fnc_Richardson, see clubb issue #855. This change is bit identical.\u000a", "date" : "2019-06-28 18:57:57 -0500", "id" : "300de16a3e09fca0d7e720a1e3755832aff3098b", "msg" : "Adding conditional statement around compute_Cx_Fnc_Richardson, see clubb issue #855. This change is bit identical.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "Skx_module.F90" ], "commitId" : "25e23c9a39541b8b5b4390afe03350b95bb9e539", "timestamp" : 1562022485000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Optimizing procedures within Skx_module. The reduction in runtime is greatly dependent on system and compiler option. See clubb issue #855 and comment by Gunther on 7-1-19 for explanation. This is BIT_CHANGING but the plots only differ in the sensitive cases.\u000a", "date" : "2019-07-01 18:08:05 -0500", "id" : "25e23c9a39541b8b5b4390afe03350b95bb9e539", "msg" : "Optimizing procedures within Skx_module. The reduction in runtime is greatly dependent on system and compiler option. See clubb issue #855 and comment by Gunther on 7-1-19 for explanation. This is BIT_CHANGING but the plots only differ in the sensitive cases.", "paths" : [ { "editType" : "edit", "file" : "Skx_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "parameters_tunable.F90", "stats_variables.F90", "advance_clubb_core_module.F90", "parameter_indices.F90" ], "commitId" : "7fd2d937257edeb8764cce7e742ab68090044175", "timestamp" : 1562182842000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@uwm.edu", "comment" : "ticket #842 we added 4 tunable parameters for tau, they are Coefficient of inverse tau term contributed by background constant value, Coefficient of inverse tau term contributed by surface log law, Coefficient of inverse tau term contributed by vertical wind shear and Coefficient of inverse tau term contributed by Brunt Vaisala frequency\u000a", "date" : "2019-07-03 14:40:42 -0500", "id" : "7fd2d937257edeb8764cce7e742ab68090044175", "msg" : "ticket #842 we added 4 tunable parameters for tau, they are Coefficient of inverse tau term contributed by background constant value, Coefficient of inverse tau term contributed by surface log law, Coefficient of inverse tau term contributed by vertical wind shear and Coefficient of inverse tau term contributed by Brunt Vaisala frequency", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "adg1_adg2_3d_luhar_pdf.F90" ], "commitId" : "1f2facc146cb5190975cca5a6387fb6e79e72d25", "timestamp" : 1562888255000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Modifying ADG1_ADG2_responder_params for efficiency reasons. It changes the way varnce_x_(1/2) is set when wp2 > w_tol_sqd and xp2 <= x_tol. Previously in that case it set the variances to 0, but now it sets them to xp2 since xp2 ~= 0 in that case anyway. This allows the where statement to have only two cases, and less cases is more efficient. This is BIT_CHANGING, but only affect the sensitive cases and passes the G unit tests. larson-group/clubb#855\u000a", "date" : "2019-07-11 18:37:35 -0500", "id" : "1f2facc146cb5190975cca5a6387fb6e79e72d25", "msg" : "Modifying ADG1_ADG2_responder_params for efficiency reasons. It changes the way varnce_x_(1/2) is set when wp2 > w_tol_sqd and xp2 <= x_tol. Previously in that case it set the variances to 0, but now it sets them to xp2 since xp2 ~= 0 in that case anyway. This allows the where statement to have only two cases, and less cases is more efficient. This is BIT_CHANGING, but only affect the sensitive cases and passes the G unit tests. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "7036e850e9581d27aa4e2915a2e8dc7da7c77d63", "timestamp" : 1562956898000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Replacing the local variables used in pdf_closure_module with references to the variables in pdf_params which they are meant to be stored in. This removes the need to copy the local variables into the pdf_params structure at the end, saving about 3% runtime. This is not bit changing, but does make the code a little uglier. larson-group/clubb#855\u000a", "date" : "2019-07-12 13:41:38 -0500", "id" : "7036e850e9581d27aa4e2915a2e8dc7da7c77d63", "msg" : "Replacing the local variables used in pdf_closure_module with references to the variables in pdf_params which they are meant to be stored in. This removes the need to copy the local variables into the pdf_params structure at the end, saving about 3% runtime. This is not bit changing, but does make the code a little uglier. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_tsdadg_pdf.F90", "pdf_utilities.F90", "pdf_closure_module.F90", "adg1_adg2_3d_luhar_pdf.F90", "new_pdf_main.F90" ], "commitId" : "a6744484daca24377722de22d516fe1931d6ac67", "timestamp" : 1562976298000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Making procedure calls consistent with procedure definitions. Required updating after previous pdf_parameter related commit. larson-group/clubb#855\u000a", "date" : "2019-07-12 19:04:58 -0500", "id" : "a6744484daca24377722de22d516fe1931d6ac67", "msg" : "Making procedure calls consistent with procedure definitions. Required updating after previous pdf_parameter related commit. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "new_pdf_main.F90" }, { "editType" : "edit", "file" : "new_tsdadg_pdf.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "pdf_utilities.F90" }, { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "LY93_pdf.F90" ], "commitId" : "3d127ce9735789aaa773085437c70ea0ad7febb9", "timestamp" : 1562976519000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Missed one\u000a", "date" : "2019-07-12 19:08:39 -0500", "id" : "3d127ce9735789aaa773085437c70ea0ad7febb9", "msg" : "Missed one", "paths" : [ { "editType" : "edit", "file" : "LY93_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "calc_pressure.F90" ], "commitId" : "e6b21ea2242dbb344bf34cebb0bbd9a3e7ea7731", "timestamp" : 1563325211000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added a new file, calc_pressure.F90, which contains code for initializing\u000aand updating the vertical profile of pressure and exner.\u000a", "date" : "2019-07-16 20:00:11 -0500", "id" : "e6b21ea2242dbb344bf34cebb0bbd9a3e7ea7731", "msg" : "I have added a new file, calc_pressure.F90, which contains code for initializing", "paths" : [ { "editType" : "add", "file" : "calc_pressure.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90", "calc_pressure.F90" ], "commitId" : "402505b5c37287ccd4d00e615b00b20c0c1becae", "timestamp" : 1563416347000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated CLUBB so that pressure is updated after mean fields have been\u000aadvanced every timestep. The results are BIT_CHANGING.\u000a", "date" : "2019-07-17 21:19:07 -0500", "id" : "402505b5c37287ccd4d00e615b00b20c0c1becae", "msg" : "I updated CLUBB so that pressure is updated after mean fields have been", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "calc_pressure.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_clubb_core_module.F90", "model_flags.F90", "clubb_api_module.F90" ], "commitId" : "db9f32467f1f0d7cd7a8f25054508fa61e383758", "timestamp" : 1563833748000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Removing gmres code. The files gmres_wrap.F90, gmres_cache.F90, and csr_matrix_module.F90 have been removed, and any sections of code which refer to or are needed only for gmres have been removed as well. larson-group/clubb#855\u000a", "date" : "2019-07-22 17:15:48 -0500", "id" : "db9f32467f1f0d7cd7a8f25054508fa61e383758", "msg" : "Removing gmres code. The files gmres_wrap.F90, gmres_cache.F90, and csr_matrix_module.F90 have been removed, and any sections of code which refer to or are needed only for gmres have been removed as well. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "gmres_wrap.F90", "gmres_cache.F90", "csr_matrix_module.F90" ], "commitId" : "427b92e4f01613d6f91ab932b002d7524a4a69fe", "timestamp" : 1563838713000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Forgot to run previous commit with --all, so the gmres files were not removed. larson-group/clubb#855\u000a", "date" : "2019-07-22 18:38:33 -0500", "id" : "427b92e4f01613d6f91ab932b002d7524a4a69fe", "msg" : "Forgot to run previous commit with --all, so the gmres files were not removed. larson-group/clubb#855", "paths" : [ { "editType" : "delete", "file" : "gmres_wrap.F90" }, { "editType" : "delete", "file" : "gmres_cache.F90" }, { "editType" : "delete", "file" : "csr_matrix_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "parameters_tunable.F90", "stats_zm_module.F90", "advance_clubb_core_module.F90", "parameter_indices.F90" ], "commitId" : "2d454818095f731d3864a0438459c86fc6bc48e4", "timestamp" : 1563920145000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "issue #842\u000aWe added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively.\u000aAlso, tau_wp2_zm and tau_xp2_zm are added in output list.\u000a", "date" : "2019-07-23 17:15:45 -0500", "id" : "2d454818095f731d3864a0438459c86fc6bc48e4", "msg" : "issue #842", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "db0b8dc2e7fa619f1a16a90499015816359d0b76", "timestamp" : 1563986631000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively.\u000aAlso, tau_wp2_zm and tau_xp2_zm are added in output list.\u000aissue #842\u000a", "date" : "2019-07-24 11:43:51 -0500", "id" : "db0b8dc2e7fa619f1a16a90499015816359d0b76", "msg" : "We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively.", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "advance_clubb_core_module.F90", "stats_zm_module.F90", "parameters_tunable.F90", "parameter_indices.F90" ], "commitId" : "ea09dc1146deb9249293bae86a80288eb8cf98ce", "timestamp" : 1563986631000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively.\u000aAlso, tau_wp2_zm and tau_xp2_zm are added in output list.\u000aissue #842\u000a", "date" : "2019-07-24 11:43:51 -0500", "id" : "ea09dc1146deb9249293bae86a80288eb8cf98ce", "msg" : "We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively.", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "feaaa15913dcbe41b21b087b7cdb4f55dc191f0a", "timestamp" : 1563986774000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. 1. Some typos are corrected. 2. New tunuable parameters are added in files named errer_$casename.in (issue #842)\u000a", "date" : "2019-07-24 11:46:14 -0500", "id" : "feaaa15913dcbe41b21b087b7cdb4f55dc191f0a", "msg" : "We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. 1. Some typos are corrected. 2. New tunuable parameters are added in files named errer_$casename.in (issue #842)", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "advance_clubb_core_module.F90", "stats_variables.F90", "stats_zm_module.F90" ], "commitId" : "e3ffdf57d28b9601a073195721f51f94b85ef2cd", "timestamp" : 1563986774000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. 1. Some typos are corrected. 2. New tunuable parameters are added in files named errer_$casename.in (issue #842)\u000a", "date" : "2019-07-24 11:46:14 -0500", "id" : "e3ffdf57d28b9601a073195721f51f94b85ef2cd", "msg" : "We added two new tunuable parameters: C_invrs_tau_N2_xp2 and C_invrs_tau_N2_wp2. e.g. invrs_tau_wp2_zm = invrs_tau_zm_simp + C_invrs_tau_N2_wp2 * sqrt( max( zero_threshold,zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) - 1e-4_core_rknd) ). Correspondingly, invrs_tau_wp2_zm and invrs_tau_xp2_zm are used in advance_wp2_wp3 and advance_xp2_xpyp respectively. 1. Some typos are corrected. 2. New tunuable parameters are added in files named errer_$casename.in (issue #842)", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "bec3a8273b471c83c78f2f475e54ddb7511ebed1", "timestamp" : 1563987351000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update tunable_parameters.in\u000a\u000adefault C_invrs_tau_N2_xp2 = 0.2, it will let tau_zm=tau_xp2_zm=tau_wp2_tau\u000a", "date" : "2019-07-24 11:55:51 -0500", "id" : "bec3a8273b471c83c78f2f475e54ddb7511ebed1", "msg" : "Update tunable_parameters.in", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "5e7fdb331acf7bb7b479c37b1195df9b3acefc9f", "timestamp" : 1563988934000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update advance_clubb_core_module.F90\u000a\u000aCorrect my accidental deletion\u000a", "date" : "2019-07-24 12:22:14 -0500", "id" : "5e7fdb331acf7bb7b479c37b1195df9b3acefc9f", "msg" : "Update advance_clubb_core_module.F90", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90", "advance_clubb_core_module.F90" ], "commitId" : "b3c3dc624ed09e4b8021ff3fd7596a9603e6b291", "timestamp" : 1564098351000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "We put Lscale's calculation into mixing_length.F90 (subroutine calc_Lscale_directly)\u000a", "date" : "2019-07-25 18:45:51 -0500", "id" : "b3c3dc624ed09e4b8021ff3fd7596a9603e6b291", "msg" : "We put Lscale's calculation into mixing_length.F90 (subroutine calc_Lscale_directly)", "paths" : [ { "editType" : "edit", "file" : "mixing_length.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "3ac916ce38c33c257203189f98243a14c1746577", "timestamp" : 1564098351000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "We put Lscale's calculation into mixing_length.F90 (subroutine calc_Lscale_directly)\u000a", "date" : "2019-07-25 18:45:51 -0500", "id" : "3ac916ce38c33c257203189f98243a14c1746577", "msg" : "We put Lscale's calculation into mixing_length.F90 (subroutine calc_Lscale_directly)", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mono_flux_limiter.F90" ], "commitId" : "185f2febb78c667d4bd6d22da4400587abf873d9", "timestamp" : 1564166838000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Efficiency improvements to calc_turb_adv_range, more specifically the parts which split w into upward and downward components. This adds a case to zero out upward and downward components for values of w that are too small to matter, and now utilizes mkl_vml math functions to improve vectorization. These mkl_vml functions are only used when compiled with MKL, specified by adding -DMKL to compiler configuration files. This is BIT_CHANGING, plots only differ in the usual sensitive cases, and the budgets, G_unit_tests and time step tests all pass. larson-group/clubb#855\u000a", "date" : "2019-07-26 13:47:18 -0500", "id" : "185f2febb78c667d4bd6d22da4400587abf873d9", "msg" : "Efficiency improvements to calc_turb_adv_range, more specifically the parts which split w into upward and downward components. This adds a case to zero out upward and downward components for values of w that are too small to matter, and now utilizes mkl_vml math functions to improve vectorization. These mkl_vml functions are only used when compiled with MKL, specified by adding -DMKL to compiler configuration files. This is BIT_CHANGING, plots only differ in the usual sensitive cases, and the budgets, G_unit_tests and time step tests all pass. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "mono_flux_limiter.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mono_flux_limiter.F90" ], "commitId" : "4e11b0aaa1aac032723d34da281c8604363d37d4", "timestamp" : 1564427207000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "This should fix the uninitialized variables test. mean_vert_vel_up_down was using the upper and lower grid levels, but calc_mean_w_up_down_component was not setting them. These levels aren't actually used by the algorithm in calc_turb_adv_range, but I made calc_mean_w_up_down_component set them to zero anyway since it seems like the simplest and safest solution. larson-group/clubb#855\u000a", "date" : "2019-07-29 14:06:47 -0500", "id" : "4e11b0aaa1aac032723d34da281c8604363d37d4", "msg" : "This should fix the uninitialized variables test. mean_vert_vel_up_down was using the upper and lower grid levels, but calc_mean_w_up_down_component was not setting them. These levels aren't actually used by the algorithm in calc_turb_adv_range, but I made calc_mean_w_up_down_component set them to zero anyway since it seems like the simplest and safest solution. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "mono_flux_limiter.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "advance_clubb_core_module.F90", "parameter_indices.F90" ], "commitId" : "11e94b26a81887e767bbe3088dcf879951147d8d", "timestamp" : 1564427709000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "An additional damping is added to the invrs_tau term in the C8 equation. ticket #842\u000a invrs_tau_wp3_zm = invrs_tau_wp2_zm &\u000a + C_invrs_tau_N2_clear_wp3 * sqrt( max( zero_threshold, &\u000a zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) ) ) &\u000a * min(one, max(zero_threshold, one &\u000a - ( (ice_supersat_frac_zm - 0.005_core_rknd )/(0.01- 0.005_core_rknd) ) ) )\u000a\u000aC_invrs_tau_N2_clear_wp3 is tunable with its defalut value of 0.\u000a", "date" : "2019-07-29 14:15:09 -0500", "id" : "11e94b26a81887e767bbe3088dcf879951147d8d", "msg" : "An additional damping is added to the invrs_tau term in the C8 equation. ticket #842", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "5bd7c2c011fc0f116f9f3694b45767b3ee37641f", "timestamp" : 1564427709000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "An additional damping is added to the invrs_tau term in the C8 equation. ticket #842\u000a invrs_tau_wp3_zm = invrs_tau_wp2_zm &\u000a + C_invrs_tau_N2_clear_wp3 * sqrt( max( zero_threshold, &\u000a zt2zm( zm2zt( brunt_vaisala_freq_sqd ) ) ) ) &\u000a * min(one, max(zero_threshold, one &\u000a - ( (ice_supersat_frac_zm - 0.005_core_rknd )/(0.01- 0.005_core_rknd) ) ) )\u000a\u000aC_invrs_tau_N2_clear_wp3 is tunable with its defalut value of 0.\u000a", "date" : "2019-07-29 14:15:09 -0500", "id" : "5bd7c2c011fc0f116f9f3694b45767b3ee37641f", "msg" : "An additional damping is added to the invrs_tau term in the C8 equation. ticket #842", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mono_flux_limiter.F90" ], "commitId" : "26d56dd9fc34a7a2c2a75531877ce80e5d0dfdd4", "timestamp" : 1564431150000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding comment because commit 561fa037e7c3c326bc4bd71b6fc486e5d2a46065 was BIT_CHANGING, but missing the commit message specifying that. It was bit changing because the upper and lower levels of mean_w_up and mean_w_down are being output to stats as of commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, so changing the upper and lower level values changed the stats output, even though those values are not used in any calculations.\u000a", "date" : "2019-07-29 15:12:30 -0500", "id" : "26d56dd9fc34a7a2c2a75531877ce80e5d0dfdd4", "msg" : "Adding comment because commit 561fa037e7c3c326bc4bd71b6fc486e5d2a46065 was BIT_CHANGING, but missing the commit message specifying that. It was bit changing because the upper and lower levels of mean_w_up and mean_w_down are being output to stats as of commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, so changing the upper and lower level values changed the stats output, even though those values are not used in any calculations.", "paths" : [ { "editType" : "edit", "file" : "mono_flux_limiter.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "advance_clubb_core_module.F90", "stats_variables.F90" ], "commitId" : "2b595277fc89333b4662fbe5f8ad42cf85f609e7", "timestamp" : 1564532469000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@lasg.iap.ac.cn", "comment" : "We use zt2zm(ice_supersat_frac) replace ice_supersat_frac_zm in the additional damping of C8.\u000aTau_wp3_zm is added in output list.\u000aTicket #842\u000a", "date" : "2019-07-30 19:21:09 -0500", "id" : "2b595277fc89333b4662fbe5f8ad42cf85f609e7", "msg" : "We use zt2zm(ice_supersat_frac) replace ice_supersat_frac_zm in the additional damping of C8.", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "adg1_adg2_3d_luhar_pdf.F90" ], "commitId" : "80905eb2df7a944184abc1c502abe3ce7555da7e", "timestamp" : 1564601051000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changing ADG1_ADG2_responder_params to use a do loop with ifs instead of a where statement. This is about 1.5% faster and is bit identical. larson-group/clubb#855\u000a", "date" : "2019-07-31 14:24:11 -0500", "id" : "80905eb2df7a944184abc1c502abe3ce7555da7e", "msg" : "Changing ADG1_ADG2_responder_params to use a do loop with ifs instead of a where statement. This is about 1.5% faster and is bit identical. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "calc_pressure.F90" ], "commitId" : "7d01c3630acdd2ca14d9201b66aff0d81502d05f", "timestamp" : 1564611614000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Pulling the calculation of p_in_Pa(_zm) out of the vertical loop in update_pressure, and precalculates one/kappa. This improved vectorization capabilities of the calculation of exponents, which is slow so that's important. Also added the option to use MKL_VML functions if -DMKL is specified, which is slightly more efficient. This saves about 1.5-2.5% and is bit identical if not using MKL. larson-group/clubb#855\u000a", "date" : "2019-07-31 17:20:14 -0500", "id" : "7d01c3630acdd2ca14d9201b66aff0d81502d05f", "msg" : "Pulling the calculation of p_in_Pa(_zm) out of the vertical loop in update_pressure, and precalculates one/kappa. This improved vectorization capabilities of the calculation of exponents, which is slow so that's important. Also added the option to use MKL_VML functions if -DMKL is specified, which is slightly more efficient. This saves about 1.5-2.5% and is bit identical if not using MKL. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "calc_pressure.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "adg1_adg2_3d_luhar_pdf.F90" ], "commitId" : "a60a7deb0a1df72dfa3601a043b4ddb001daab2c", "timestamp" : 1564611783000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Renaming width_factor to width_factor_1 to indicate that it is intended for use with the first pdf component, (two-width_factor_1) is the value for the second component. larson-group/clubb#855\u000a", "date" : "2019-07-31 17:23:03 -0500", "id" : "a60a7deb0a1df72dfa3601a043b4ddb001daab2c", "msg" : "Renaming width_factor to width_factor_1 to indicate that it is intended for use with the first pdf component, (two-width_factor_1) is the value for the second component. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "915547ce2354ea058ecb18b93ef84775bc2e17eb", "timestamp" : 1564696319000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Efficiency improvements to transform_pdf_chi_eta_component. Moving the where statement to if statement inside loop to avoid sqrt operations. Reducing number of divide operations, and putting some code in a loop which reduces cache misses. This is BIT_CHANGING, but not answer changing, plots only differ slightly in the most sensitive cases. larson-group/clubb#855.\u000a", "date" : "2019-08-01 16:51:59 -0500", "id" : "915547ce2354ea058ecb18b93ef84775bc2e17eb", "msg" : "Efficiency improvements to transform_pdf_chi_eta_component. Moving the where statement to if statement inside loop to avoid sqrt operations. Reducing number of divide operations, and putting some code in a loop which reduces cache misses. This is BIT_CHANGING, but not answer changing, plots only differ slightly in the most sensitive cases. larson-group/clubb#855.", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "1f578b33392b16cfa7367aa6a114c1f7352d984e", "timestamp" : 1564708347000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Modifying calc_cloud_frac_component to optionally use mkl_vml functions. Added a different version of the procedure to handle the liquid cloud fraction specifically, so the ice_supersat_frac could remain as is. The structure of the procedure when using the MKL functions is based on the changes to calc_turb_adv_range in commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, since I've already tested that well and it seems to make sense to keep the code similar if it does similar things. This reduces runtime by about 2% when using MKL functions and about 0.5% otherwise. The procedures also use precalculated inverses where possible, so the results are BIT_CHANGING, but not answer changing. larson-group/clubb#855\u000a", "date" : "2019-08-01 20:12:27 -0500", "id" : "1f578b33392b16cfa7367aa6a114c1f7352d984e", "msg" : "Modifying calc_cloud_frac_component to optionally use mkl_vml functions. Added a different version of the procedure to handle the liquid cloud fraction specifically, so the ice_supersat_frac could remain as is. The structure of the procedure when using the MKL functions is based on the changes to calc_turb_adv_range in commit 0b3ec0d5fc4b89b4a6f34964af3cfda8cb89b9f7, since I've already tested that well and it seems to make sense to keep the code similar if it does similar things. This reduces runtime by about 2% when using MKL functions and about 0.5% otherwise. The procedures also use precalculated inverses where possible, so the results are BIT_CHANGING, but not answer changing. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "4504e3baf5bf7fec8011d83e2d8656712d994607", "timestamp" : 1565219850000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Refactoring the lhs and rhs setup procedures for xm_wpxp. There are a number of lhs terms that are very general, and used by all the lhs matricies. The code now calculates these terms in a new procedure calc_xm_wpxp_lhs_terms and passes those terms into the lhs setup. The same sort of thing is done with the first pressure terms and turbulent advection terms, those terms are shared between pairs of lhs/rhs calls. This is BIT_CHANGING, but is not answer changing. See comment on Jul 3 on ticket larson-group/clubb#855\u000a", "date" : "2019-08-07 18:17:30 -0500", "id" : "4504e3baf5bf7fec8011d83e2d8656712d994607", "msg" : "Refactoring the lhs and rhs setup procedures for xm_wpxp. There are a number of lhs terms that are very general, and used by all the lhs matricies. The code now calculates these terms in a new procedure calc_xm_wpxp_lhs_terms and passes those terms into the lhs setup. The same sort of thing is done with the first pressure terms and turbulent advection terms, those terms are shared between pairs of lhs/rhs calls. This is BIT_CHANGING, but is not answer changing. See comment on Jul 3 on ticket larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "eb88df13288af2a9454f5d34f20fdda75b3ac19e", "timestamp" : 1565303811000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update advance_clubb_core_module.F90\u000a", "date" : "2019-08-08 17:36:51 -0500", "id" : "eb88df13288af2a9454f5d34f20fdda75b3ac19e", "msg" : "Update advance_clubb_core_module.F90", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "62f72f15b94edb88e01a1bd031faa32e321edbf1", "timestamp" : 1565303976000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update advance_clubb_core_module.F90\u000a", "date" : "2019-08-08 17:39:36 -0500", "id" : "62f72f15b94edb88e01a1bd031faa32e321edbf1", "msg" : "Update advance_clubb_core_module.F90", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "advance_helper_module.F90" ], "commitId" : "ae9c7332c1bbdd55ff49f2a4974fcdb7ce709f06", "timestamp" : 1565382207000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I switched on direct diagnosis of tau rather than Lscale.\u000aThat is, I set l_diag_Lscale_from_tau = .true.\u000aThus, this commit is BIT_CHANGING.\u000a\u000aBecause diagnosing tau changes answers, I retuned CLUBB,\u000ataking the opportunity to add some features seem better justified.\u000aFor instance, we now damp wp2 using tke (l_damp_wp2_using_em = .true.)\u000abecause doing so is more standard in turbulence modeling and because\u000ait may help reduce damping on Sc clouds.\u000aC7 is allowed to become larger in statically stable layers\u000a(l_use_C7_Richardson = .true.)\u000abecause that is what the LES of Heinze show, and because doing so\u000amight help limit gravity waves above cloud.\u000a\u000aMany parameters have been retuned. I set C2rtthl = C2rt = C2thl\u000abecause it seems more justifiable and because doing so\u000aproduces the correct sign of wprtp_bp in Cu layers.\u000aAlso, the \"b\" parameters have been set equal to the non-\"b\"\u000aparameters in order to reduce the number of tunable parameters.\u000aThe \"b\" parameters were based on skewness, which is hard to control and tune.\u000aInstead, with this revised version, the tuning parameters are based mostly\u000aon thlm, which is more robust. I set C15=0 because this term\u000ais complex and hard to justify. c_K8 was increased because\u000ait smooths the solutions without dominating the wp3 budget.\u000abeta was reduced in order to make wp2xp larger and wpxp2 smaller.\u000a\u000aI included a bug fix to Cx_fnc_Richardson, which prevents\u000aC7 and C11 from exceeding the maximum set by Cx_max.\u000a\u000aThe brunt vaisala frequency is reduced for slightly stable layers\u000ain order to allow Sc layers to remain well mixed.\u000a\u000aFurther tuning is needed to reduce oscillations and temporal noise.\u000aAlso, the momentum fields --- upwp, vpwp, up2, and vp2 ---\u000aneed to be retuned. Otherwise, the results are comparable to the prior\u000adefault.\u000a\u000aWe're expecting a speed-up of 10% to 15% because computing CLUBB's\u000amixing length directly is so costly.\u000a\u000aFor #842.\u000a", "date" : "2019-08-09 15:23:27 -0500", "id" : "ae9c7332c1bbdd55ff49f2a4974fcdb7ce709f06", "msg" : "I switched on direct diagnosis of tau rather than Lscale.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in", "configurable_model_flags.in" ], "commitId" : "c034fc21d9fbdc55e15091533e6ea709562af28f", "timestamp" : 1565382207000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I switched on direct diagnosis of tau rather than Lscale.\u000aThat is, I set l_diag_Lscale_from_tau = .true.\u000aThus, this commit is BIT_CHANGING.\u000a\u000aBecause diagnosing tau changes answers, I retuned CLUBB,\u000ataking the opportunity to add some features seem better justified.\u000aFor instance, we now damp wp2 using tke (l_damp_wp2_using_em = .true.)\u000abecause doing so is more standard in turbulence modeling and because\u000ait may help reduce damping on Sc clouds.\u000aC7 is allowed to become larger in statically stable layers\u000a(l_use_C7_Richardson = .true.)\u000abecause that is what the LES of Heinze show, and because doing so\u000amight help limit gravity waves above cloud.\u000a\u000aMany parameters have been retuned. I set C2rtthl = C2rt = C2thl\u000abecause it seems more justifiable and because doing so\u000aproduces the correct sign of wprtp_bp in Cu layers.\u000aAlso, the \"b\" parameters have been set equal to the non-\"b\"\u000aparameters in order to reduce the number of tunable parameters.\u000aThe \"b\" parameters were based on skewness, which is hard to control and tune.\u000aInstead, with this revised version, the tuning parameters are based mostly\u000aon thlm, which is more robust. I set C15=0 because this term\u000ais complex and hard to justify. c_K8 was increased because\u000ait smooths the solutions without dominating the wp3 budget.\u000abeta was reduced in order to make wp2xp larger and wpxp2 smaller.\u000a\u000aI included a bug fix to Cx_fnc_Richardson, which prevents\u000aC7 and C11 from exceeding the maximum set by Cx_max.\u000a\u000aThe brunt vaisala frequency is reduced for slightly stable layers\u000ain order to allow Sc layers to remain well mixed.\u000a\u000aFurther tuning is needed to reduce oscillations and temporal noise.\u000aAlso, the momentum fields --- upwp, vpwp, up2, and vp2 ---\u000aneed to be retuned. Otherwise, the results are comparable to the prior\u000adefault.\u000a\u000aWe're expecting a speed-up of 10% to 15% because computing CLUBB's\u000amixing length directly is so costly.\u000a\u000aFor #842.\u000a", "date" : "2019-08-09 15:23:27 -0500", "id" : "c034fc21d9fbdc55e15091533e6ea709562af28f", "msg" : "I switched on direct diagnosis of tau rather than Lscale.", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" }, { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "calc_pressure.F90" ], "commitId" : "a3f5913c59b8c599216b06beb6650b779783f0d1", "timestamp" : 1565627451000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the pressure initialization for cases that use sounding that is given\u000ain terms of pressure coordinates so that the initial profile of pressure is\u000aconsistent with the pressure update code. This code is BIT_CHANGING for cases\u000athat use pressure coordinates in their soundings (MC3E, TWP-ICE, and the CGILS\u000acases).\u000a", "date" : "2019-08-12 11:30:51 -0500", "id" : "a3f5913c59b8c599216b06beb6650b779783f0d1", "msg" : "I updated the pressure initialization for cases that use sounding that is given", "paths" : [ { "editType" : "edit", "file" : "calc_pressure.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "calc_pressure.F90" ], "commitId" : "e573fabcb13ba98b412ce4ce75ade6b6f2ec5063", "timestamp" : 1565639019000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I changed the function calculate_thvm from a pre-defined vector of size nz to\u000aan elemental function. The results in GrADS output files from this revision are\u000aan exact match to the result in GrADS output files from the previous revision\u000afor all cases.\u000a\u000aA quick test of running BOMEX 5 times both before and after the changes showed\u000aa 1.16% speed increase for the new version with the elemental function.\u000a", "date" : "2019-08-12 14:43:39 -0500", "id" : "e573fabcb13ba98b412ce4ce75ade6b6f2ec5063", "msg" : "I changed the function calculate_thvm from a pre-defined vector of size nz to", "paths" : [ { "editType" : "edit", "file" : "calc_pressure.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "51a86a3f221fffeef2d437cbe76a1445816cc3b2", "timestamp" : 1565640439000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the calculation of thvm in advance_clubb_core to use the\u000acalculate_thvm function. The results in GrADS output files from this revision\u000aare an exact match to the results in GrADS output files from the previous\u000arevision for all cases.\u000a", "date" : "2019-08-12 15:07:19 -0500", "id" : "51a86a3f221fffeef2d437cbe76a1445816cc3b2", "msg" : "I updated the calculation of thvm in advance_clubb_core to use the", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90" ], "commitId" : "9a3e6d37f6350cfbe66595183c646941b367559e", "timestamp" : 1565650355000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding SAVE attribute to some stats variables, as it was causing compiler errors when using the newest version of the gfortran compiler. Also commenting out Lapack library dependency from gfortran config file, this required additional Lapack source files be added. Now, no Lapack library files are required to compile CLUBB, whereas before, the source was being compiled, but the missing dependencies we're being added from libraries. This is BIT_CHANGING in all cases when using the gfortran compiler, but only in some cases when using the ifort compiler. Some plots, such as rico, are noticably different when compiled with gfortran, but are bit identical when compiled with ifort. The intel implementation of Lapack used by the ifort compiler must be more similar to the source Lapack than was the Lapack library that was being used for the gfortran compiler.\u000a", "date" : "2019-08-12 17:52:35 -0500", "id" : "9a3e6d37f6350cfbe66595183c646941b367559e", "msg" : "Adding SAVE attribute to some stats variables, as it was causing compiler errors when using the newest version of the gfortran compiler. Also commenting out Lapack library dependency from gfortran config file, this required additional Lapack source files be added. Now, no Lapack library files are required to compile CLUBB, whereas before, the source was being compiled, but the missing dependencies we're being added from libraries. This is BIT_CHANGING in all cases when using the gfortran compiler, but only in some cases when using the ifort compiler. Some plots, such as rico, are noticably different when compiled with gfortran, but are bit identical when compiled with ifort. The intel implementation of Lapack used by the ifort compiler must be more similar to the source Lapack than was the Lapack library that was being used for the gfortran compiler.", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "973528097e0ce042fbd3820dc7fef4bab9d930f5", "timestamp" : 1565657839000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding a subroutine in advance_xp2_xpyp to calculate the turbulent advection terms and modying the rhs and lhs setup procedures to accept these turbulent advection terms as inputs. Before, the turbulent advection terms were calcualted within the rhs and lhs setup procedures, but this resulted in expensive redundant calculations. larson-group/clubb#855\u000a", "date" : "2019-08-12 19:57:19 -0500", "id" : "973528097e0ce042fbd3820dc7fef4bab9d930f5", "msg" : "Adding a subroutine in advance_xp2_xpyp to calculate the turbulent advection terms and modying the rhs and lhs setup procedures to accept these turbulent advection terms as inputs. Before, the turbulent advection terms were calcualted within the rhs and lhs setup procedures, but this resulted in expensive redundant calculations. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "8e208d5eb9ed5621198bc25ed7ce599b6fd3b32c", "timestamp" : 1565813536000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changing where statement that was causing floating point errors to a do with if's. This should allow code compiled with the newest version of gfortran to run to completion for microphysics enabled cases. This is BIT_CHANING in microphysics cases, but the values of the output arrays of the only changed subroutine only differ starting around roughly the 13th decimal place. larson-group/clubb#859 larson-group/sys_admin#626\u000a", "date" : "2019-08-14 15:12:16 -0500", "id" : "8e208d5eb9ed5621198bc25ed7ce599b6fd3b32c", "msg" : "Changing where statement that was causing floating point errors to a do with if's. This should allow code compiled with the newest version of gfortran to run to completion for microphysics enabled cases. This is BIT_CHANING in microphysics cases, but the values of the output arrays of the only changed subroutine only differ starting around roughly the 13th decimal place. larson-group/clubb#859 larson-group/sys_admin#626", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "adg1_adg2_3d_luhar_pdf.F90" ], "commitId" : "41a78a1c734861469e5bcd2469a6f150563b56e6", "timestamp" : 1565886799000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am committing a test where I changed subroutine ADG1_w_closure\u000afrom using nested where statements to using if statements within\u000athe context of an elemental subroutine. My notes are below:\u000a\u000a===============================================================================\u000a\u000aHere's an intriguing idea to try in place of nested \"where\" statements.\u000a\u000aThe article at:\u000a\u000ahttps://data-science-austria.at/2018/12/24/the-need-for-speed-part-2-c-vs-fortran-vs-c/\u000a\u000asays that using FORTRAN ELEMENTAL subroutines and functions is just as fast as\u000ausing FORTRAN serial loops with -O3 optimization (which is what we've been doing\u000afor optimization).\u000a\u000aThe use of elemental subprograms contains many advantages:\u000a\u000a1) The subprogram becomes much more versatile, because it can be used for\u000ascalars as well as arrays of varying sizes and dimensions.\u000a\u000a2) In our case, the changesets become easier to follow, as they are basically\u000aa change from where statements to if ... then statements. There are no\u000aadditional do loops and loop indices needed. These additional statements and\u000aindices can be confusing when comparing code differences and they clutter-up\u000a(a.k.a. uglify) subprograms.\u000a\u000a3) The article states that this method should be just as fast for vectors of\u000asize 1000 and less. For CLUBB, this would be the number of height levels,\u000awhich don't normally exceed 128. I tested the old version (where statements)\u000aand the new version for multiple runs of BOMEX and ARM, and the timings were\u000aequivalent.\u000a\u000a4) This avoids the problem of code entering the portion of a \"where\" statement\u000athat it shouldn't be and crashing when floating point trapping is enabled.\u000a\u000aThe use of elemental subprograms has the following limitations:\u000a\u000a1) All input and output variables must be of the same size and dimension.\u000a\u000aIn other words, whatever code is calling the elemental subroutine must feed\u000ait, as well as take as output, either all scalar values, or all vectors of\u000asize nz, or all 2-D arrays of size nx by ny, etc.\u000a\u000a2) Elemental subprograms are also pure subprograms, so they have all the\u000arestrictions of pure subprograms (no print statements, etc.).\u000a\u000a================================================================================\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aObligatory Larson Group GitHub Issue Reference: #859.\u000a", "date" : "2019-08-15 11:33:19 -0500", "id" : "41a78a1c734861469e5bcd2469a6f150563b56e6", "msg" : "I am committing a test where I changed subroutine ADG1_w_closure", "paths" : [ { "editType" : "edit", "file" : "adg1_adg2_3d_luhar_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "02066c0bf79abbe15aac432b24aee2a17798b09d", "timestamp" : 1566416566000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changing determination of threshold used to clip large values of rtp2. Before it was possible that this large value clipping introduced a value before tolerance, if rtm was too small. Causing addition problems and potentially crashes. This is BIT_CHANGING. larson-group/clubb#862\u000a", "date" : "2019-08-21 14:42:46 -0500", "id" : "02066c0bf79abbe15aac432b24aee2a17798b09d", "msg" : "Changing determination of threshold used to clip large values of rtp2. Before it was possible that this large value clipping introduced a value before tolerance, if rtm was too small. Causing addition problems and potentially crashes. This is BIT_CHANGING. larson-group/clubb#862", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "e7c7ca60b79b960a8d9b457dd866359044bb23ce", "timestamp" : 1566428123000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Finally fixing line length error in pdf_closure\u000a", "date" : "2019-08-21 17:55:23 -0500", "id" : "e7c7ca60b79b960a8d9b457dd866359044bb23ce", "msg" : "Finally fixing line length error in pdf_closure", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "matrix_operations.F90", "lapack_wrap.F90", "lapack_interfaces.F90" ], "commitId" : "3cdd4d6ac73bb48c637368df6ac83377017914ac", "timestamp" : 1566603423000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding more Lapack source files, and a new file to interface with Lapack routines in general. This allows us to call a general interface procedure that can handle single or double precision routines. This should fix the ifort bug we've been seeing, and should be a more robust way to handle this double/single precision situation in general. Works with all compilers, and in single or double precision, producing bit identical results. See larson-group/clubb#861\u000a", "date" : "2019-08-23 18:37:03 -0500", "id" : "3cdd4d6ac73bb48c637368df6ac83377017914ac", "msg" : "Adding more Lapack source files, and a new file to interface with Lapack routines in general. This allows us to call a general interface procedure that can handle single or double precision routines. This should fix the ifort bug we've been seeing, and should be a more robust way to handle this double/single precision situation in general. Works with all compilers, and in single or double precision, producing bit identical results. See larson-group/clubb#861", "paths" : [ { "editType" : "edit", "file" : "matrix_operations.F90" }, { "editType" : "edit", "file" : "lapack_wrap.F90" }, { "editType" : "add", "file" : "lapack_interfaces.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "feb1fe6742605fd9d6c20e12ee69991b52ed0b54", "timestamp" : 1567019770000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding blunt clipping to below ground level of xm variables, keeping their value at least tolerance. This prevents the crashing of mc3e caused by rtm being < 0. This is BIT_CHANGING, but only for mc3e, and the plots are very similar. Which must mean that mc3e is our only case where rtm becomes too small. larson-group/clubb#862\u000a", "date" : "2019-08-28 14:16:10 -0500", "id" : "feb1fe6742605fd9d6c20e12ee69991b52ed0b54", "msg" : "Adding blunt clipping to below ground level of xm variables, keeping their value at least tolerance. This prevents the crashing of mc3e caused by rtm being < 0. This is BIT_CHANGING, but only for mc3e, and the plots are very similar. Which must mean that mc3e is our only case where rtm becomes too small. larson-group/clubb#862", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "parameters_tunable.F90", "stats_zm_module.F90", "parameter_indices.F90", "advance_xm_wpxp_module.F90", "advance_helper_module.F90" ], "commitId" : "f165ae4ca0cd02d825c185eaba700b0c6c715fd9", "timestamp" : 1567811198000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@uwm.edu", "comment" : "This commit is BIT_CHANGING. It is mainly because 1) We changed the equation of tau_xp2_zm, producing a better agreement with LES. 2) Many parameters have been retuned. We reduce nu2 and c_k2, because they bring us stronger scalar variances,especially for RFO1. We set C1=1, because it helps to reduce wp2 near cloud top. We also set C6=2 to generate stronger fluxes etc.\u000aSome other changes were made in this commit. They are 1) we modified subroutine calc_brunt_vaisala_freq_sqd by adding brunt_vaisala_freq_sqd_mixed, although brunt_vaisala_freq_sqd_dry is still used as default. 2) cloud fracting was considered in brunt_vaisala_freq_sqd as well as compute_Cx_Fnc_Richardson. 3) C_invrs_tau_N2_wpxp was added as a new parameter.\u000a", "date" : "2019-09-06 18:06:38 -0500", "id" : "f165ae4ca0cd02d825c185eaba700b0c6c715fd9", "msg" : "This commit is BIT_CHANGING. It is mainly because 1) We changed the equation of tau_xp2_zm, producing a better agreement with LES. 2) Many parameters have been retuned. We reduce nu2 and c_k2, because they bring us stronger scalar variances,especially for RFO1. We set C1=1, because it helps to reduce wp2 near cloud top. We also set C6=2 to generate stronger fluxes etc.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "d7186c743f7723d7f398b86781caeeb2eefc437d", "timestamp" : 1567811198000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@uwm.edu", "comment" : "This commit is BIT_CHANGING. It is mainly because 1) We changed the equation of tau_xp2_zm, producing a better agreement with LES. 2) Many parameters have been retuned. We reduce nu2 and c_k2, because they bring us stronger scalar variances,especially for RFO1. We set C1=1, because it helps to reduce wp2 near cloud top. We also set C6=2 to generate stronger fluxes etc.\u000aSome other changes were made in this commit. They are 1) we modified subroutine calc_brunt_vaisala_freq_sqd by adding brunt_vaisala_freq_sqd_mixed, although brunt_vaisala_freq_sqd_dry is still used as default. 2) cloud fracting was considered in brunt_vaisala_freq_sqd as well as compute_Cx_Fnc_Richardson. 3) C_invrs_tau_N2_wpxp was added as a new parameter.\u000a", "date" : "2019-09-06 18:06:38 -0500", "id" : "d7186c743f7723d7f398b86781caeeb2eefc437d", "msg" : "This commit is BIT_CHANGING. It is mainly because 1) We changed the equation of tau_xp2_zm, producing a better agreement with LES. 2) Many parameters have been retuned. We reduce nu2 and c_k2, because they bring us stronger scalar variances,especially for RFO1. We set C1=1, because it helps to reduce wp2 near cloud top. We also set C6=2 to generate stronger fluxes etc.", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "ac210548b0f17a1dfab455f9b1d46e6011af8e65", "timestamp" : 1567963574000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update advance_helper_module.F90\u000a", "date" : "2019-09-08 12:26:14 -0500", "id" : "ac210548b0f17a1dfab455f9b1d46e6011af8e65", "msg" : "Update advance_helper_module.F90", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "61228ff386d06aedecc69fb4797122fc3b1dc52a", "timestamp" : 1567963704000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update advance_clubb_core_module.F90\u000a", "date" : "2019-09-08 12:28:24 -0500", "id" : "61228ff386d06aedecc69fb4797122fc3b1dc52a", "msg" : "Update advance_clubb_core_module.F90", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "9c87ac3db2fa3a072b024b295dbb2931961e256e", "timestamp" : 1568044019000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update advance_helper_module.F90\u000a\u000aFixed a typo which cause a fail in Uninitialized Variables Test.\u000a", "date" : "2019-09-09 10:46:59 -0500", "id" : "9c87ac3db2fa3a072b024b295dbb2931961e256e", "msg" : "Update advance_helper_module.F90", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "c11c7882e433749159918d89176c892aa53b823e", "timestamp" : 1568049431000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding C_invrs_tau_N2_wpxp to the initmax namelist. This should fix the fire tuning crashes. larson-group/sys_admin#626\u000a", "date" : "2019-09-09 12:17:11 -0500", "id" : "c11c7882e433749159918d89176c892aa53b823e", "msg" : "Adding C_invrs_tau_N2_wpxp to the initmax namelist. This should fix the fire tuning crashes. larson-group/sys_admin#626", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf.F90" ], "commitId" : "74b922513308db7dc1355a55eb6c90974943d170", "timestamp" : 1568667521000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding a file for the new hybrid PDF, which combines the w equation set\u000afrom the new PDF (setter variable) and an equation set for the responder\u000avariables similar to what is used for ADG1.\u000a", "date" : "2019-09-16 15:58:41 -0500", "id" : "74b922513308db7dc1355a55eb6c90974943d170", "msg" : "I am adding a file for the new hybrid PDF, which combines the w equation set", "paths" : [ { "editType" : "add", "file" : "new_hybrid_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf.F90" ], "commitId" : "6ae78a67f971b37c6fdf70999e812c2cbba56437", "timestamp" : 1568672384000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the function to calculate the implicit coefficient for the wp4 term,\u000aas well as added the function to calculate the implicit coefficient for the\u000awp2xp terms for the new hybrid PDF.\u000a", "date" : "2019-09-16 17:19:44 -0500", "id" : "6ae78a67f971b37c6fdf70999e812c2cbba56437", "msg" : "I updated the function to calculate the implicit coefficient for the wp4 term,", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf.F90" ], "commitId" : "1cfb74544fc88bd03f57c8764ce100ee8a0651ea", "timestamp" : 1568729503000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I made some changes to new_hybrid_pdf.F90 so that it would compile in its\u000acurrent state.\u000a", "date" : "2019-09-17 09:11:43 -0500", "id" : "1cfb74544fc88bd03f57c8764ce100ee8a0651ea", "msg" : "I made some changes to new_hybrid_pdf.F90 so that it would compile in its", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf.F90" ], "commitId" : "9636e0e0bb6f1d6447761880fbbb34a0b69365ce", "timestamp" : 1568744001000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I edited that subroutine that calculates the implicit coefficient and explicit\u000aterm for the xp2 equation (wpxp2 term) for the new hybrid PDF.\u000a", "date" : "2019-09-17 13:13:21 -0500", "id" : "9636e0e0bb6f1d6447761880fbbb34a0b69365ce", "msg" : "I edited that subroutine that calculates the implicit coefficient and explicit", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf.F90" ], "commitId" : "91d3418f0eb9a96a0dabdac245bf463212f0bec6", "timestamp" : 1568758968000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the subroutine that calculates the implicit coefficient and explicit\u000aterm for the wpxpyp term in the xpyp predictive equation for the new hybrid PDF.\u000a", "date" : "2019-09-17 17:22:48 -0500", "id" : "91d3418f0eb9a96a0dabdac245bf463212f0bec6", "msg" : "I updated the subroutine that calculates the implicit coefficient and explicit", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_variables.F90", "stats_lh_zt_module.F90", "stats_zt_module.F90" ], "commitId" : "9b7da5ab8f5fcef54a61b7174324e236c012f997", "timestamp" : 1568990372000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "Replaced rrm_cond with rrm_evap and Nrm_cond with Nrm_evap because they described the same quantity. This is BIT_CHANGING just because the output now contains the N/rrm_evap instead of N/rrm_cond variable name. No changes were made to the values themselves.\u000asee #867\u000a", "date" : "2019-09-20 09:39:32 -0500", "id" : "9b7da5ab8f5fcef54a61b7174324e236c012f997", "msg" : "Replaced rrm_cond with rrm_evap and Nrm_cond with Nrm_evap because they described the same quantity. This is BIT_CHANGING just because the output now contains the N/rrm_evap instead of N/rrm_cond variable name. No changes were made to the values themselves.", "paths" : [ { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "stats_lh_zt_module.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90" ], "commitId" : "b535997cda4d30fb1751ebc4ba76d41246275503", "timestamp" : 1569341507000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am adding a new file, new_hybrid_pdf_main.F90, as a driver file for the new\u000ahybrid PDF.\u000a", "date" : "2019-09-24 11:11:47 -0500", "id" : "b535997cda4d30fb1751ebc4ba76d41246275503", "msg" : "I am adding a new file, new_hybrid_pdf_main.F90, as a driver file for the new", "paths" : [ { "editType" : "add", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90" ], "commitId" : "d03f5db1bbbb97e9db44aecd763d9de81c7cd841", "timestamp" : 1569521049000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I worked more the functions for the new hybrid PDF.\u000a", "date" : "2019-09-26 13:04:09 -0500", "id" : "d03f5db1bbbb97e9db44aecd763d9de81c7cd841", "msg" : "I worked more the functions for the new hybrid PDF.", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "3b3fa0f343d8202f19fe1f3e4f480f9efca0eae1", "timestamp" : 1570226820000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Refactoring advance_xp2_xpyp to have the capability to perform only one combined solve when the lhs matricies are equivalent. larson-group/clubb#855\u000a", "date" : "2019-10-04 17:07:00 -0500", "id" : "3b3fa0f343d8202f19fe1f3e4f480f9efca0eae1", "msg" : "Refactoring advance_xp2_xpyp to have the capability to perform only one combined solve when the lhs matricies are equivalent. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_utilities.F90", "setup_clubb_pdf_params.F90" ], "commitId" : "7b4d6d73b34681ce3ebb3b2133a1b417178b882c", "timestamp" : 1570539011000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I changed all the PDF utility functions in pdf_utilities.F90 to elemental\u000afunctions.\u000a", "date" : "2019-10-08 07:50:11 -0500", "id" : "7b4d6d73b34681ce3ebb3b2133a1b417178b882c", "msg" : "I changed all the PDF utility functions in pdf_utilities.F90 to elemental", "paths" : [ { "editType" : "edit", "file" : "pdf_utilities.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_utilities.F90" ], "commitId" : "fc7dd9a9251d4862a924755633e0242aaca24141", "timestamp" : 1570541067000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I forgot a \"then\" to go with an \"elseif\".\u000a", "date" : "2019-10-08 08:24:27 -0500", "id" : "fc7dd9a9251d4862a924755633e0242aaca24141", "msg" : "I forgot a \"then\" to go with an \"elseif\".", "paths" : [ { "editType" : "edit", "file" : "pdf_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "09460e50e11427c81d50af8196badfb77207e287", "timestamp" : 1570570170000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding intent(in) attribute to rhs_ta terms and making scalar forcings local variables, since that is what they were supposed to be. larson-group/clubb#855\u000a", "date" : "2019-10-08 16:29:30 -0500", "id" : "09460e50e11427c81d50af8196badfb77207e287", "msg" : "Adding intent(in) attribute to rhs_ta terms and making scalar forcings local variables, since that is what they were supposed to be. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "a6bf3fc74cfad569977dc2740bedeca0d63737c0", "timestamp" : 1570579988000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding case to and modifying xp2_xpyp_solve to remove the need for xp2_xpyp_solve_multiple. larson-group/clubb#855\u000a", "date" : "2019-10-08 19:13:08 -0500", "id" : "a6bf3fc74cfad569977dc2740bedeca0d63737c0", "msg" : "Adding case to and modifying xp2_xpyp_solve to remove the need for xp2_xpyp_solve_multiple. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "4e3165fe96a6b2071a388b787d2159b326a52398", "timestamp" : 1570831072000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Refactoring advance_xm_wpxp to clean up code. Now subroutines solve_xm_wpxp_with_multiple_lhs and solve_xm_wpxp_with_single_lhs are called, rather than having huge chunks of similar code. Also changing the way calc_xm_wpxp_ta_terms works, it uses other input variables rather than coef_ and term_ arguements and instead calculates those locally to abstract functionality. This is BIT_CHANGING for some cases, but idenetical for some with some compilers. There are no visible differences in plots when tested with a number of different flags, and gabls2 (which uses scalars) are also the same. larson-group/clubb#855\u000a", "date" : "2019-10-11 16:57:52 -0500", "id" : "4e3165fe96a6b2071a388b787d2159b326a52398", "msg" : "Refactoring advance_xm_wpxp to clean up code. Now subroutines solve_xm_wpxp_with_multiple_lhs and solve_xm_wpxp_with_single_lhs are called, rather than having huge chunks of similar code. Also changing the way calc_xm_wpxp_ta_terms works, it uses other input variables rather than coef_ and term_ arguements and instead calculates those locally to abstract functionality. This is BIT_CHANGING for some cases, but idenetical for some with some compilers. There are no visible differences in plots when tested with a number of different flags, and gabls2 (which uses scalars) are also the same. larson-group/clubb#855", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90" ], "commitId" : "9e77b1ad9feb229702bb7d2618aa870e8ca0476f", "timestamp" : 1571148245000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am continuing to build the driver subroutine for the new hybrid PDF.\u000a", "date" : "2019-10-15 09:04:05 -0500", "id" : "9e77b1ad9feb229702bb7d2618aa870e8ca0476f", "msg" : "I am continuing to build the driver subroutine for the new hybrid PDF.", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90" ], "commitId" : "2636b911d7c0ada3c7e221d34684aa2a9a6793d5", "timestamp" : 1571244715000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am continuing to work on the driver file for the new hybrid PDF.\u000a", "date" : "2019-10-16 11:51:55 -0500", "id" : "2636b911d7c0ada3c7e221d34684aa2a9a6793d5", "msg" : "I am continuing to work on the driver file for the new hybrid PDF.", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90" ], "commitId" : "19bfff3f4f90144b30c8143fb4fe50d5d8085c5a", "timestamp" : 1571316332000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have completed the main parts of the driver subroutine for the new hybrid PDF.\u000a", "date" : "2019-10-17 07:45:32 -0500", "id" : "19bfff3f4f90144b30c8143fb4fe50d5d8085c5a", "msg" : "I have completed the main parts of the driver subroutine for the new hybrid PDF.", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_parameter_module.F90", "new_hybrid_pdf_main.F90" ], "commitId" : "363763a4cf6fd7200c76a6da2d71925fec4cbfa0", "timestamp" : 1571324271000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "The code for the new hybrid PDF now compiles.\u000a", "date" : "2019-10-17 09:57:51 -0500", "id" : "363763a4cf6fd7200c76a6da2d71925fec4cbfa0", "msg" : "The code for the new hybrid PDF now compiles.", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" }, { "editType" : "edit", "file" : "pdf_parameter_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "pdf_closure_module.F90" ], "commitId" : "bd601ca08c9f0daeb8fa98f4579d7150bea6d381", "timestamp" : 1571324344000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added an entry for the new hybrid PDF.\u000a", "date" : "2019-10-17 09:59:04 -0500", "id" : "bd601ca08c9f0daeb8fa98f4579d7150bea6d381", "msg" : "I added an entry for the new hybrid PDF.", "paths" : [ { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf.F90", "new_hybrid_pdf_main.F90" ], "commitId" : "79f0955fbe6e20587d26ad6b920154b075ef784f", "timestamp" : 1571339325000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added the new hybrid PDF to the G unit tests.\u000a", "date" : "2019-10-17 14:08:45 -0500", "id" : "79f0955fbe6e20587d26ad6b920154b075ef784f", "msg" : "I have added the new hybrid PDF to the G unit tests.", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf.F90" }, { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf.F90" ], "commitId" : "b222dcbc135f4e89df4cfff38be930d9e8772b3b", "timestamp" : 1571345095000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Mathematically, sigma_x_1_sqd and sigma_x_2_sqd cannot be less than 0.\u000aNumerically, this can happen when numerical round-off error causes\u000aepsilon-sized negative values. When this happens, reset the PDF component\u000avariance to 0.\u000a", "date" : "2019-10-17 15:44:55 -0500", "id" : "b222dcbc135f4e89df4cfff38be930d9e8772b3b", "msg" : "Mathematically, sigma_x_1_sqd and sigma_x_2_sqd cannot be less than 0.", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "pdf_closure_module.F90", "variables_prognostic_module.F90" ], "commitId" : "8cfdc21a73477317533a6323d7bb6ffdd4a177f7", "timestamp" : 1571416566000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added code to interface the call to the new hybrid PDF with pdf_closure\u000aand have fed the necessary variables in from advance_clubb_core.\u000a", "date" : "2019-10-18 11:36:06 -0500", "id" : "8cfdc21a73477317533a6323d7bb6ffdd4a177f7", "msg" : "I added code to interface the call to the new hybrid PDF with pdf_closure", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" }, { "editType" : "edit", "file" : "variables_prognostic_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xm_wpxp_module.F90", "advance_xp2_xpyp_module.F90" ], "commitId" : "2b6ff6cccdbc1d75702d531d5bd62cd5aef226c9", "timestamp" : 1571530046000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I interfaced the implicit coefficients and explicit terms used in the turbulent\u000aadvection code for the new hybrid PDF. The PDF can now be run interactively\u000afor wp3, all wpxp (wprtp, wpthlp, upwp, vpwp, and wpsclrp), rtp2, thlp2, and\u000artpthlp.\u000a", "date" : "2019-10-19 19:07:26 -0500", "id" : "2b6ff6cccdbc1d75702d531d5bd62cd5aef226c9", "msg" : "I interfaced the implicit coefficients and explicit terms used in the turbulent", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "e2bbcece49c6eb70c16dfdd66522d1fea66a48b7", "timestamp" : 1571530362000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I fixed a small error. The code compiles again now.\u000a", "date" : "2019-10-19 19:12:42 -0500", "id" : "e2bbcece49c6eb70c16dfdd66522d1fea66a48b7", "msg" : "I fixed a small error. 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I am restoring it to its former glory (before\u000awhere statements or pushed down loops), but I am turning it into an elemental\u000asubroutine.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a", "date" : "2019-10-25 11:07:17 -0500", "id" : "c5a755bba80851cbaca3a58c3768f018a87113d1", "msg" : "I am updating the subroutine that calculates PDF component means and standard", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "6486d4621e9999dc5c5fbb71b6ec4262bfc82a2e", "timestamp" : 1572033711000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I placed proper thresholding on interpolated up2 and interpolated vp2\u000abefore the call to PDF closure.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision for all\u000acases.\u000a", "date" : "2019-10-25 15:01:51 -0500", "id" : "6486d4621e9999dc5c5fbb71b6ec4262bfc82a2e", "msg" : "I placed proper thresholding on interpolated up2 and interpolated vp2", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90" ], "commitId" : "f66969bf1e01403e7e4694e1d11209af057162f2", "timestamp" : 1572039684000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added a limiter to keep the maximum magnitude of the correlations of\u000afluxes to have a upper limit of max_mag_correlation_flux (which is the limit\u000athese correlations should have anyway).\u000a", "date" : "2019-10-25 16:41:24 -0500", "id" : "f66969bf1e01403e7e4694e1d11209af057162f2", "msg" : "I added a limiter to keep the maximum magnitude of the correlations of", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90", "Nc_Ncn_eqns.F90" ], "commitId" : "d647c75c8a71abcbf4c990562dd33bd13000d958", "timestamp" : 1572096033000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I upgraded Nc_Ncn_eqns.F90 to use elemental functions.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a", "date" : "2019-10-26 08:20:33 -0500", "id" : "d647c75c8a71abcbf4c990562dd33bd13000d958", "msg" : "I upgraded Nc_Ncn_eqns.F90 to use elemental functions.", "paths" : [ { "editType" : "edit", "file" : "Nc_Ncn_eqns.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "0bbfad6256a0124264bbe3ce79762551170e719b", "timestamp" : 1572097496000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "The new hybrid PDF also uses this bit of code that sets the correlation\u000aof w and chi, as well as the correlation of w and eta, to 0 for use in the\u000acorrelation arrays to obey PDF standards.\u000a", "date" : "2019-10-26 08:44:56 -0500", "id" : "0bbfad6256a0124264bbe3ce79762551170e719b", "msg" : "The new hybrid PDF also uses this bit of code that sets the correlation", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90", "pdf_closure_module.F90" ], "commitId" : "4b682669ee973988cfa6434f90837f1aa428ea11", "timestamp" : 1572357782000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I made modifications to the new hybrid PDF so that that calculation of F_w\u000atemporarily becomes more ADG1/sigma_sqd_w-like. 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"msg" : "I am setting the zeta variance ratio to 1 (symmetric design) by", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "afb54c36c23b91c8b3c7eb1fa24f1ca3f9fb8da6", "timestamp" : 1572559447000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "The variable type implicit_coefs_terms needs to be made public\u000aso that it is available to host models.\u000a", "date" : "2019-10-31 17:04:07 -0500", "id" : "afb54c36c23b91c8b3c7eb1fa24f1ca3f9fb8da6", "msg" : "The variable type implicit_coefs_terms needs to be made public", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90" ], "commitId" : "e62b062d69789b8034b91fddd0454be4a18f6e62", "timestamp" : 1572565760000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I changed the value of the coefficient in the F_w equation to 0.45\u000abecause it produces a result that is more similar to ADG1 results\u000afor most cases. This is a better spot to start testing, development,\u000aand tuning from.\u000a", "date" : "2019-10-31 18:49:20 -0500", "id" : "e62b062d69789b8034b91fddd0454be4a18f6e62", "msg" : "I changed the value of the coefficient in the F_w equation to 0.45", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "7a9ffd8b8ca3f2f5de3b51b75cf72ebf67d1246c", "timestamp" : 1572707965000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating the code to pass up3, vp3, and sclrp3 out of advance_clubb_core\u000aand then back in again. They were temporarily being stored through use\u000astatements within advance_clubb_core.\u000a\u000aThis does not change results of standalone CLUBB. However, prior to this\u000achange, these variables weren't being allocated for host model runs. This\u000awas causing a segmentation fault.\u000a", "date" : "2019-11-02 10:19:25 -0500", "id" : "7a9ffd8b8ca3f2f5de3b51b75cf72ebf67d1246c", "msg" : "I am updating the code to pass up3, vp3, and sclrp3 out of advance_clubb_core", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "e9b085012b811e7726988c0b3bbec21bb064ce11", "timestamp" : 1573243077000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have started the process of adding the coding infrastructure\u000afor having different up2 and vp2 LHS for the new hybrid PDF.\u000aThe default ADG1 code remains unchanged.\u000a", "date" : "2019-11-08 13:57:57 -0600", "id" : "e9b085012b811e7726988c0b3bbec21bb064ce11", "msg" : "I have started the process of adding the coding infrastructure", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "f48d9abfdfb56389af74f9542a229864cee47ac6", "timestamp" : 1573311461000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have completed the addition of the ability to use different up2\u000aand vp2 LHS for the new hybrid PDF. The default ADG1 PDF remains\u000aunaffected by these changes.\u000a", "date" : "2019-11-09 08:57:41 -0600", "id" : "f48d9abfdfb56389af74f9542a229864cee47ac6", "msg" : "I have completed the addition of the ability to use different up2", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "model_flags.F90", "clubb_api_module.F90" ], "commitId" : "6fa1cf9c290c207154a211f5fc860668576181d6", "timestamp" : 1573594095000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I have added 'l_use_precip_frac', 'l_do_expldiff_rtm_thlm', 'l_use_C11_Richardson' and 'l_prescribed_avg_deltaz' to the 'configurable_clubb_flags_nl' namelist. The latter was moved from 'model_setting' namelist. #856\u000a", "date" : "2019-11-12 15:28:15 -0600", "id" : "6fa1cf9c290c207154a211f5fc860668576181d6", "msg" : "I have added 'l_use_precip_frac', 'l_do_expldiff_rtm_thlm', 'l_use_C11_Richardson' and 'l_prescribed_avg_deltaz' to the 'configurable_clubb_flags_nl' namelist. The latter was moved from 'model_setting' namelist. #856", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "c691cebf902dbf4017a5e36b3b49cf93e3728021", "timestamp" : 1573594095000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I have added 'l_use_precip_frac', 'l_do_expldiff_rtm_thlm', 'l_use_C11_Richardson' and 'l_prescribed_avg_deltaz' to the 'configurable_clubb_flags_nl' namelist. The latter was moved from 'model_setting' namelist. #856\u000a", "date" : "2019-11-12 15:28:15 -0600", "id" : "c691cebf902dbf4017a5e36b3b49cf93e3728021", "msg" : "I have added 'l_use_precip_frac', 'l_do_expldiff_rtm_thlm', 'l_use_C11_Richardson' and 'l_prescribed_avg_deltaz' to the 'configurable_clubb_flags_nl' namelist. The latter was moved from 'model_setting' namelist. #856", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "a3fa5e1a393d836c3bbc5622c69ecfd9aab2ed76", "timestamp" : 1573597176000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I made the l_calc_w_corr code (turned off by default) run again by\u000achanging subroutine calc_corr_w_hm_n to an elemental subroutine.\u000aPreviously, runtime exceptions were found within the \"where\" statements.\u000a", "date" : "2019-11-12 16:19:36 -0600", "id" : "a3fa5e1a393d836c3bbc5622c69ecfd9aab2ed76", "msg" : "I made the l_calc_w_corr code (turned off by default) run again by", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "f5c0f864a1ef81dc3b1b08dc1f6a49a2caff860d", "timestamp" : 1573750479000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I added a few more flags to the 'configurable_clubb_flags_nl' namelist. Also I gave 'l_use_wp3_pr3' the parameter attribute.\u000aThis is done in preparation for the introduction of the 'clubb_config_flags_type'. #856\u000a", "date" : "2019-11-14 10:54:39 -0600", "id" : "f5c0f864a1ef81dc3b1b08dc1f6a49a2caff860d", "msg" : "I added a few more flags to the 'configurable_clubb_flags_nl' namelist. Also I gave 'l_use_wp3_pr3' the parameter attribute.", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "ff07bc52a3aaadf260f89d6b7232525ae43bfc89", "timestamp" : 1573750479000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I added a few more flags to the 'configurable_clubb_flags_nl' namelist. Also I gave 'l_use_wp3_pr3' the parameter attribute.\u000aThis is done in preparation for the introduction of the 'clubb_config_flags_type'. #856\u000a", "date" : "2019-11-14 10:54:39 -0600", "id" : "ff07bc52a3aaadf260f89d6b7232525ae43bfc89", "msg" : "I added a few more flags to the 'configurable_clubb_flags_nl' namelist. Also I gave 'l_use_wp3_pr3' the parameter attribute.", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90" ], "commitId" : "780fe29dcb36ae1ec349ba5c65f090059f203685", "timestamp" : 1573771919000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I have started altering argument lists to feed clubb configurable flags through them. This commit has 'l_use_precip_frac',\u000a'l_min_wp2_from_corr_wx', and 'l_min_xp2_from_corr_wx' covered. #856\u000a", "date" : "2019-11-14 16:51:59 -0600", "id" : "780fe29dcb36ae1ec349ba5c65f090059f203685", "msg" : "I have started altering argument lists to feed clubb configurable flags through them. This commit has 'l_use_precip_frac',", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90", "mean_adv.F90", "advance_windm_edsclrm_module.F90", "mono_flux_limiter.F90" ], "commitId" : "37be56d2a4b786d7f12ddd69516cb4352ada6199", "timestamp" : 1573842974000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I continued to alter argument lists. This commit covers 'l_C2_cloud_frac', 'l_diffuse_rtm_and_thlm', 'l_stability_correct_Kh_N2_zm',\u000a'l_upwind_wpxp_ta', 'l_upwind_xpyp_ta', 'l_upwind_xm_ma'. #856\u000a", "date" : "2019-11-15 12:36:14 -0600", "id" : "37be56d2a4b786d7f12ddd69516cb4352ada6199", "msg" : "I continued to alter argument lists. This commit covers 'l_C2_cloud_frac', 'l_diffuse_rtm_and_thlm', 'l_stability_correct_Kh_N2_zm',", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "mean_adv.F90" }, { "editType" : "edit", "file" : "mono_flux_limiter.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "mixing_length.F90", "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "9b71f7dbb101e9db7cc9806b71a84163a7ea74f8", "timestamp" : 1573859283000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I continued to alter argument lists. This commit covers ' l_vert_avg_closure', 'l_trapezoidal_rule_zt', 'l_trapezoidal_rule_zm',\u000a'l_call_pdf_closure_twice', 'l_use_cloud_cover', 'l_stability_correct_tau_zm', 'l_damp_wp2_using_em', 'l_do_expldiff_rtm_thlm',\u000a'l_Lscale_plume_centered', 'l_diag_Lscale_from_tau', 'l_use_ice_latent', 'l_use_C7_Richardson', 'l_use_C11_Richardson',\u000a'l_rcm_supersat_adj', 'l_damp_wp3_Skw_squared', and 'l_prescribed_avg_deltaz'. #856\u000a", "date" : "2019-11-15 17:08:03 -0600", "id" : "9b71f7dbb101e9db7cc9806b71a84163a7ea74f8", "msg" : "I continued to alter argument lists. This commit covers ' l_vert_avg_closure', 'l_trapezoidal_rule_zt', 'l_trapezoidal_rule_zm',", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "mixing_length.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90", "clip_explicit.F90", "output_netcdf.F90", "sigma_sqd_w_module.F90", "stats_clubb_utilities.F90", "setup_clubb_pdf_params.F90", "advance_windm_edsclrm_module.F90", "advance_helper_module.F90" ], "commitId" : "63bfc28d22b334b76ebb1e8fe547ebe81c3df81a", "timestamp" : 1574362548000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I continued to alter argument lists. This commit covers the last flags in the namelist 'configurable_clubb_flags_nl', namely 'l_predict_upwp_vpwp',\u000a'l_tke_aniso', 'l_standard_term_ta', 'l_brunt_vaisala_freq_moist', 'l_use_thvm_in_bv_freq', and 'l_single_C2_Skw'. #856\u000a", "date" : "2019-11-21 12:55:48 -0600", "id" : "63bfc28d22b334b76ebb1e8fe547ebe81c3df81a", "msg" : "I continued to alter argument lists. This commit covers the last flags in the namelist 'configurable_clubb_flags_nl', namely 'l_predict_upwp_vpwp',", "paths" : [ { "editType" : "edit", "file" : "sigma_sqd_w_module.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "output_netcdf.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "clip_explicit.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90", "output_netcdf.F90", "diagnose_correlations_module.F90", "stats_clubb_utilities.F90", "setup_clubb_pdf_params.F90", "advance_windm_edsclrm_module.F90" ], "commitId" : "3d7dd80beb0c24b1cb5ceac4a565ae6f13fd8004", "timestamp" : 1574381544000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "Finished altering argument lists. This commit covers the final seven flags, which are in different namelists.\u000aThis includes 'l_calc_thlp2_rad', 'l_uv_nudge', 'l_rtm_nudge', 'l_diagnose_correlations', 'l_calc_w_corr',\u000a'l_const_Nc_in_cloud', and 'l_fix_w_chi_eta_correlations'. #856\u000a", "date" : "2019-11-21 18:12:24 -0600", "id" : "3d7dd80beb0c24b1cb5ceac4a565ae6f13fd8004", "msg" : "Finished altering argument lists. This commit covers the final seven flags, which are in different namelists.", "paths" : [ { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "diagnose_correlations_module.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "output_netcdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "e27846ed5438edd18859a6fa13a44871e0f9dad7", "timestamp" : 1574785619000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I introduced the 'clubb_config_flags_type'. Furthermore, I have created subroutines to set default values, to initialize the derived type and to print the derived type.\u000aHowever it is not used by now. #856\u000a", "date" : "2019-11-26 10:26:59 -0600", "id" : "e27846ed5438edd18859a6fa13a44871e0f9dad7", "msg" : "I introduced the 'clubb_config_flags_type'. Furthermore, I have created subroutines to set default values, to initialize the derived type and to print the derived type.", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "clubb_api_module.F90", "stats_clubb_utilities.F90", "parameters_tunable.F90", "setup_clubb_pdf_params.F90", "corr_varnce_module.F90" ], "commitId" : "976026d16da3de89e4899700ff544352f642a398", "timestamp" : 1576018347000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I enabled the use of the 'clubb_config_flags_type'. I changed 'clubb_standalone', 'clubb_tuner' and the G_unit_tests so that they now use it. The results are bit-for-bit identical. #856\u000a", "date" : "2019-12-10 16:52:27 -0600", "id" : "976026d16da3de89e4899700ff544352f642a398", "msg" : "I enabled the use of the 'clubb_config_flags_type'. I changed 'clubb_standalone', 'clubb_tuner' and the G_unit_tests so that they now use it. The results are bit-for-bit identical. #856", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "corr_varnce_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "cd4f009eb87b05355ab501f2a1e7c7666bcfea7a", "timestamp" : 1576263181000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I fed pdf_params_frz into subroutine advance_clubb_core\u000avia a use statement. Doing so avoids a seg fault with\u000al_use_ice_latent = .true. Results are BFB for arm_97.\u000a\u000aFor #871.\u000a", "date" : "2019-12-13 12:53:01 -0600", "id" : "cd4f009eb87b05355ab501f2a1e7c7666bcfea7a", "msg" : "I fed pdf_params_frz into subroutine advance_clubb_core", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "parameters_tunable.F90", "clubb_api_module.F90" ], "commitId" : "b7b343873c52f374140f1b829c58798d23104713", "timestamp" : 1576288560000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding error code to arguement list of non-api routines where it was included in the api version.\u000a", "date" : "2019-12-13 19:56:00 -0600", "id" : "b7b343873c52f374140f1b829c58798d23104713", "msg" : "Adding error code to arguement list of non-api routines where it was included in the api version.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90", "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "3108bbdf54aa0f815048daf566c0015714ec82c1", "timestamp" : 1576621906000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Moving location of error messages that were in advance_clubb_core. Adding error code setting to those spots as well, they should be fatal.\u000a", "date" : "2019-12-17 16:31:46 -0600", "id" : "3108bbdf54aa0f815048daf566c0015714ec82c1", "msg" : "Moving location of error messages that were in advance_clubb_core. Adding error code setting to those spots as well, they should be fatal.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "mixing_length.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "0cfd69bf18f68389e4d86b7fac53b3e828e98f8c", "timestamp" : 1576699854000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/sdomke", "fullName" : "Steffen Domke" }, "authorEmail" : "sdomke@uwm.edu", "comment" : "Added use statement for pdf_params_frz in src/CLUBB_core/clubb_api_module.f90 and made it public.\u000aThis was done to be able to use the variable in SAM's SGS_CLUBB package.\u000a\u000ahttps://github.com/larson-group/clubb/issues/871\u000a", "date" : "2019-12-18 14:10:54 -0600", "id" : "0cfd69bf18f68389e4d86b7fac53b3e828e98f8c", "msg" : "Added use statement for pdf_params_frz in src/CLUBB_core/clubb_api_module.f90 and made it public.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "8105cfd6a2a86d2adf95bfe73e9ee210219dd580", "timestamp" : 1576855679000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I have fixed the warnings for lines exceeding 100 characters.\u000a", "date" : "2019-12-20 09:27:59 -0600", "id" : "8105cfd6a2a86d2adf95bfe73e9ee210219dd580", "msg" : "I have fixed the warnings for lines exceeding 100 characters.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "234b88f48750523927211d4908d6ed086592941b", "timestamp" : 1576880962000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Passing individual flags into setup_clubb_core, rather than the type container for them. This is done for code clarity.\u000a", "date" : "2019-12-20 16:29:22 -0600", "id" : "234b88f48750523927211d4908d6ed086592941b", "msg" : "Passing individual flags into setup_clubb_core, rather than the type container for them. This is done for code clarity.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "11b379246a683faec006978acd3764328492619f", "timestamp" : 1578600058000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Trivial update to test if cams autoupdate works\u000a", "date" : "2020-01-09 14:00:58 -0600", "id" : "11b379246a683faec006978acd3764328492619f", "msg" : "Trivial update to test if cams autoupdate works", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "model_flags.F90" ], "commitId" : "6b20ec2a88f083ee48eac3e39d0e7f94852afcc7", "timestamp" : 1578723242000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Revert \"I am setting model flags and tunable parameters in the clubb_E3SM_silhs branch\"\u000a\u000aI am reverting commit da00f00. In that commit, I set some tunable parameters\u000aand flags to be consistent with an old version of E3SM-CLUBB-SILHS. However,\u000aresults from those old cases are hopelessly lost anyway, and we should keep\u000aflags and parameters consistent with today's CLUBB. Secondly, the code change\u000ain da00f00 is blocking a merge of the modern CLUBB master into this branch.\u000a\u000aThis reverts commit da00f00f1bd353a7e413a738e1424ddddd751a2b.\u000a", "date" : "2020-01-11 00:14:02 -0600", "id" : "6b20ec2a88f083ee48eac3e39d0e7f94852afcc7", "msg" : "Revert \"I am setting model flags and tunable parameters in the clubb_E3SM_silhs branch\"", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "1b3ce367c1fd861f61265a4b797c300cbf0a016a", "timestamp" : 1579036682000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I placed E3SM preprocessor commands around E3SM-specific code in\u000aparameters_tunable.F90.\u000a", "date" : "2020-01-14 15:18:02 -0600", "id" : "1b3ce367c1fd861f61265a4b797c300cbf0a016a", "msg" : "I placed E3SM preprocessor commands around E3SM-specific code in", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "latin_hypercube_driver_module.F90" ], "commitId" : "167b63c98f5944d7d45de97507e8d910b376992c", "timestamp" : 1579122114000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Restoring assertion check for the vertical correlation calculation. larson-group/clubb#869\u000a", "date" : "2020-01-15 15:01:54 -0600", "id" : "167b63c98f5944d7d45de97507e8d910b376992c", "msg" : "Restoring assertion check for the vertical correlation calculation. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_silhs.F90", "latin_hypercube_driver_module.F90" ], "commitId" : "c927e76c34601e24c555ad799e32bb83e560a0a2", "timestamp" : 1579138765000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changing the error treshold in assert_correct_cloud_normal to use the previously defined single precision threshold. This should fix occasional errors. larson-group/clubb#869\u000a", "date" : "2020-01-15 19:39:25 -0600", "id" : "c927e76c34601e24c555ad799e32bb83e560a0a2", "msg" : "Changing the error treshold in assert_correct_cloud_normal to use the previously defined single precision threshold. This should fix occasional errors. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "parameters_silhs.F90" }, { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "e6f8822a24416b4d853465f7bd797ea5a8fb92dd", "timestamp" : 1579207489000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added E3SM's clubb_ parameters that can be read in from the\u000aE3SM clubb_param_nl namelist that are now found on E3SM's\u000amaster branch (and weren't previously). This is within\u000athe #ifdef E3SM preprocessor directive and won't affect\u000aCLUBB except in the context of E3SM.\u000a", "date" : "2020-01-16 14:44:49 -0600", "id" : "e6f8822a24416b4d853465f7bd797ea5a8fb92dd", "msg" : "I added E3SM's clubb_ parameters that can be read in from the", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "01cd689e03930500afd5a99d8b980dbf78b4bc2b", "timestamp" : 1579215203000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added the remainder the clubb_ terms that were added previously to\u000athe zhun/atm/clubb_silhs_v2 branch of the UWM E3SM repository. This\u000aonly affects code in the #ifdef E3SM preprocessor flag.\u000a", "date" : "2020-01-16 16:53:23 -0600", "id" : "01cd689e03930500afd5a99d8b980dbf78b4bc2b", "msg" : "I added the remainder the clubb_ terms that were added previously to", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "latin_hypercube_driver_module.F90" ], "commitId" : "27ac5d4ef6f344b80445522f9e313392896a2495", "timestamp" : 1579642680000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Changing error threshold in assert_correct_cloud_normal and fixing bug where we weren't passing the correct array section. This should fix the WRF parallel test and the PGI test. larson-group/clubb#869\u000a", "date" : "2020-01-21 15:38:00 -0600", "id" : "27ac5d4ef6f344b80445522f9e313392896a2495", "msg" : "Changing error threshold in assert_correct_cloud_normal and fixing bug where we weren't passing the correct array section. This should fix the WRF parallel test and the PGI test. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "transform_to_pdf_module.F90", "latin_hypercube_driver_module.F90" ], "commitId" : "b6025d4bae73e4715cd9ba9d404464f8daae4c4e", "timestamp" : 1579714696000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Small updates to acc kernel statments for general performance improvement. This is bit-for-bit. larson-group/clubb#869\u000a", "date" : "2020-01-22 11:38:16 -0600", "id" : "b6025d4bae73e4715cd9ba9d404464f8daae4c4e", "msg" : "Small updates to acc kernel statments for general performance improvement. This is bit-for-bit. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" }, { "editType" : "edit", "file" : "transform_to_pdf_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "latin_hypercube_driver_module.F90" ], "commitId" : "5f9e2a7a767c2b2ee554bfccc0c9908d50f4043d", "timestamp" : 1579716158000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Redoing some data directives to only copy data that we need off the device. Data that is needed by assertion checks and stats will be updated conditionally. 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This is all bit-for-bit. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "transform_to_pdf_module.F90" ], "commitId" : "1f9d2abc6ca0b7b180c4d0f6f18197c40ef594e1", "timestamp" : 1579897098000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Adding space because commit a8e61923fa19887baef220aa1a7c8be0f773770f was BIT_CHANGING. larson-group/clubb#869\u000a", "date" : "2020-01-24 14:18:18 -0600", "id" : "1f9d2abc6ca0b7b180c4d0f6f18197c40ef594e1", "msg" : "Adding space because commit a8e61923fa19887baef220aa1a7c8be0f773770f was BIT_CHANGING. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "transform_to_pdf_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "transform_to_pdf_module.F90" ], "commitId" : "c58014f82bae800df319de3edfed14f6d221964f", "timestamp" : 1579899486000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Simple performance improvement refactoring. Merging loops and creating tmp variable to use to help reduce memory usage. This changes the order of operations so this is BIT_CHANGING. larson-group/clubb#869\u000a", "date" : "2020-01-24 14:58:06 -0600", "id" : "c58014f82bae800df319de3edfed14f6d221964f", "msg" : "Simple performance improvement refactoring. Merging loops and creating tmp variable to use to help reduce memory usage. This changes the order of operations so this is BIT_CHANGING. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "transform_to_pdf_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "latin_hypercube_driver_module.F90" ], "commitId" : "8e5716b6671ee0b87017b2816ab718e90d1bb028", "timestamp" : 1580239752000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Small performance improvement. Almost reverting the loops to their previous form using the unbounded_point variable. This is all bit-for-bit. larson-group/clubb#869\u000a", "date" : "2020-01-28 13:29:12 -0600", "id" : "8e5716b6671ee0b87017b2816ab718e90d1bb028", "msg" : "Small performance improvement. Almost reverting the loops to their previous form using the unbounded_point variable. 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This is all bit-for-bit. larson-group/clubb#869\u000a", "date" : "2020-02-06 14:51:33 -0600", "id" : "b6b18c6a112162a8ef8fbf13aa3478a4b7062d7d", "msg" : "GPUizing clip_transform_silhs_output and pushing data directives up call tree. This is all bit-for-bit. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "transform_to_pdf_module.F90" }, { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "transform_to_pdf_module.F90", "latin_hypercube_driver_module.F90" ], "commitId" : "b7c52042cb960e2a85c4402ec4e1da7791ab56a3", "timestamp" : 1581030860000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Making some data copying regions asyncronous with compute regions, improving performance. This is bit-for-bit. larson-group/clubb#869\u000a", "date" : "2020-02-06 17:14:20 -0600", "id" : "b7c52042cb960e2a85c4402ec4e1da7791ab56a3", "msg" : "Making some data copying regions asyncronous with compute regions, improving performance. This is bit-for-bit. larson-group/clubb#869", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" }, { "editType" : "edit", "file" : "transform_to_pdf_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_type_utilities.F90" ], "commitId" : "bde68d858a6c622fc6acdd4c2255c6125c632a38", "timestamp" : 1581722411000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I changed the dummy argument 'value' in the 'stat_update_var' subroutine from explicit to assumed size. #874\u000a", "date" : "2020-02-14 17:20:11 -0600", "id" : "bde68d858a6c622fc6acdd4c2255c6125c632a38", "msg" : "I changed the dummy argument 'value' in the 'stat_update_var' subroutine from explicit to assumed size. #874", "paths" : [ { "editType" : "edit", "file" : "stats_type_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "clubb_api_module.F90" ], "commitId" : "f4cbd72beba82c17113c6a38d43a72e88bfe2fc5", "timestamp" : 1581778729000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added the new l_update_pressure configurable flag to clubb_config_flags.\u000aWhen this flag is enabled (which it is by default), CLUBB updates\u000apressure and exner every timestep. This new flags allows this feature\u000ato easily be turned off within the context of host models, such as\u000aCAM and E3SM.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision for\u000aall cases.\u000a", "date" : "2020-02-15 08:58:49 -0600", "id" : "f4cbd72beba82c17113c6a38d43a72e88bfe2fc5", "msg" : "I added the new l_update_pressure configurable flag to clubb_config_flags.", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "081305f3f0bcfe634f5cc2c6b2d8dd5bf3c64542", "timestamp" : 1581778729000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added the new l_update_pressure configurable flag to clubb_config_flags.\u000aWhen this flag is enabled (which it is by default), CLUBB updates\u000apressure and exner every timestep. This new flags allows this feature\u000ato easily be turned off within the context of host models, such as\u000aCAM and E3SM.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision for\u000aall cases.\u000a", "date" : "2020-02-15 08:58:49 -0600", "id" : "081305f3f0bcfe634f5cc2c6b2d8dd5bf3c64542", "msg" : "I added the new l_update_pressure configurable flag to clubb_config_flags.", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "new_hybrid_pdf_main.F90" ], "commitId" : "a32a63a586047be39f39af42106bfb5f31efb672", "timestamp" : 1582228068000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added some code I used in the special input fields branch to make\u000athe PDF of w symmetric, so that the PDF at a value of positive skewness\u000aof w (for example, +2) looks like a mirror image of the PDF at the opposite\u000avalue of negative skewness (for example, -2).\u000a", "date" : "2020-02-20 13:47:48 -0600", "id" : "a32a63a586047be39f39af42106bfb5f31efb672", "msg" : "I added some code I used in the special input fields branch to make", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "numerical_check.F90" ], "commitId" : "9225a01acef12413480c3deb0cc2dfd804127c27", "timestamp" : 1584200643000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@uwm.edu", "comment" : "An improved NaN-Inf checker. It is based on IEEE_ARITHMETIC. (issue#875)[https://github.com/larson-group/clubb/issues/875]\u000a", "date" : "2020-03-14 10:44:03 -0500", "id" : "9225a01acef12413480c3deb0cc2dfd804127c27", "msg" : "An improved NaN-Inf checker. It is based on IEEE_ARITHMETIC. (issue#875)[https://github.com/larson-group/clubb/issues/875]", "paths" : [ { "editType" : "edit", "file" : "numerical_check.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_type_utilities.F90" ], "commitId" : "0dca127542d480d4f81bb75019c575e2b3addf85", "timestamp" : 1584204136000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nselke", "fullName" : "nselke" }, "authorEmail" : "nselke@uwm.edu", "comment" : "I revert the changes from commit 'fbcbd86' from February 14th 2020 to resolve an issue with SAM CLUBB. For details see #874.\u000a", "date" : "2020-03-14 11:42:16 -0500", "id" : "0dca127542d480d4f81bb75019c575e2b3addf85", "msg" : "I revert the changes from commit 'fbcbd86' from February 14th 2020 to resolve an issue with SAM CLUBB. For details see #874.", "paths" : [ { "editType" : "edit", "file" : "stats_type_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "variables_prognostic_module.F90" ], "commitId" : "64b5afb6666c2d345052d96f8f1d8ae54761daf8", "timestamp" : 1584638975000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I got rid of the \"allocatable\", \"allocate\", and \"deallocate\" statements\u000ain regards to pdf_params and pdf_params_frz because NCAR could not get\u000aCAM to run using the NAG compiler. As it turns out, the code can run\u000aon group computers without these statements.\u000a", "date" : "2020-03-19 12:29:35 -0500", "id" : "64b5afb6666c2d345052d96f8f1d8ae54761daf8", "msg" : "I got rid of the \"allocatable\", \"allocate\", and \"deallocate\" statements", "paths" : [ { "editType" : "edit", "file" : "variables_prognostic_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "error_code.F90" ], "commitId" : "279fab75ad386341b7d26f56991681e86ee9eef3", "timestamp" : 1584682838000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I placed an ifndef CLUBB_CAM preprocessor flag around the code in\u000aerror_code.F90 that uses the FORTRAN intrinsic call to getpid().\u000aThis causes problems for NCAR when they try to compile CAM using\u000athe NAG compiler.\u000a", "date" : "2020-03-20 00:40:38 -0500", "id" : "279fab75ad386341b7d26f56991681e86ee9eef3", "msg" : "I placed an ifndef CLUBB_CAM preprocessor flag around the code in", "paths" : [ { "editType" : "edit", "file" : "error_code.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "25b836771d9185938dffb4327d6444a6e3bcb005", "timestamp" : 1585575594000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "I reduced the minimum possible value of lmin from 4.0 to 1.0.\u000a\u000aThis is because Mark Taylor found that for the E3SM model, reducing lmin from 4 to 1 prevents excessive cooling at the surface near Greenland. For more information about this \"Tlay\" error, see [here](https://acme-climate.atlassian.net/wiki/spaces/NGDNA/pages/1296793934/CLUBB+lmin+coeff+sensitivity?focusedCommentId=1296892065#comment-1296892065) and [here](https://acme-climate.atlassian.net/wiki/spaces/NGDNA/pages/1235255422/Tlay+Error+in+ne256pg2+Runs+cold+temperature+plots).\u000a\u000alarson-group/climate_process_team#196\u000a", "date" : "2020-03-30 08:39:54 -0500", "id" : "25b836771d9185938dffb4327d6444a6e3bcb005", "msg" : "I reduced the minimum possible value of lmin from 4.0 to 1.0.", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "5a748b32a36b1c101fd9ba323db0a204a96f16ac", "timestamp" : 1585586425000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "I made a print/write statement debug level 3\u000a\u000abecause it was filling up the logs of global CAM and E3SM simulations.\u000a\u000aFor #755 and #800\u000a", "date" : "2020-03-30 11:40:25 -0500", "id" : "5a748b32a36b1c101fd9ba323db0a204a96f16ac", "msg" : "I made a print/write statement debug level 3", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "a050d6abf83b7403c321a47e310b9df7c350e867", "timestamp" : 1585586685000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "I made a second print/write statement debug level 3\u000a\u000abecause it was also filling up the logs of global CAM and E3SM simulations.\u000a\u000aFor #755 and #800.\u000a", "date" : "2020-03-30 11:44:45 -0500", "id" : "a050d6abf83b7403c321a47e310b9df7c350e867", "msg" : "I made a second print/write statement debug level 3", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "f1873bdcf6480583a05d39372926472755e0c055", "timestamp" : 1585587118000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/guozhun", "fullName" : "guozhun" }, "authorEmail" : "guozhun@uwm.edu", "comment" : "I fix a print/write statement debug level3. For #755 and #800\u000a", "date" : "2020-03-30 11:51:58 -0500", "id" : "f1873bdcf6480583a05d39372926472755e0c055", "msg" : "I fix a print/write statement debug level3. For #755 and #800", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "f58158365d6813e0b2ee60497eb0774176abf064", "timestamp" : 1586811945000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am replacing the \"use\" statements that referenced\u000avariables_diagnostic_module from advance_clubb_core and replacing\u000athem with local declarations. This requires that some\u000aadditional variables are passed into and out of advance_clubb_core.\u000a\u000aAdditionally, Lscale is now recalculated outside of advance_clubb_core\u000ausing TKE and Kh for use in SILHS code. This makes this commit\u000aBIT_CHANGING.\u000a\u000aCLUBB GitHub Issue Reference: #876.\u000a", "date" : "2020-04-13 16:05:45 -0500", "id" : "f58158365d6813e0b2ee60497eb0774176abf064", "msg" : "I am replacing the \"use\" statements that referenced", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_clubb_utilities.F90", "advance_clubb_core_module.F90" ], "commitId" : "0f67628552092a7d229225bac08badff3b074d62", "timestamp" : 1586827490000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I \"brought back the stats\" by passing the stats from advance_clubb_core\u000ato stats_accumulate, getting rid of the \"use\" statements.\u000a\u000aThis commit is BIT_CHANGING, since it changes stats output.\u000a", "date" : "2020-04-13 20:24:50 -0500", "id" : "0f67628552092a7d229225bac08badff3b074d62", "msg" : "I \"brought back the stats\" by passing the stats from advance_clubb_core", "paths" : [ { "editType" : "edit", "file" : "stats_clubb_utilities.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "dd9ad18fdb32917c840b9406d2ae629f51ff91b9", "timestamp" : 1586888964000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Removing the reference to variables_diagnostic_module (sigma_sqd_w_zt and rtm_ref)\u000afrom subroutine pdf_closure_driver in advance_clubb_core.\u000a", "date" : "2020-04-14 13:29:24 -0500", "id" : "dd9ad18fdb32917c840b9406d2ae629f51ff91b9", "msg" : "Removing the reference to variables_diagnostic_module (sigma_sqd_w_zt and rtm_ref)", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "7a05c93c702035d8a08b1121d7e927af63e186f3", "timestamp" : 1586895654000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Results were changed yesterday for some cases because thlprcp was\u000ano longer being output from advance_clubb_core for use in the\u000acalculate_thlp2_rad. This was previously accomplished through a\u000a\"use\" statement. The variable thlprcp is now output through the\u000aargument list of advance_clubb_core.\u000a\u000aThis commit is BIT_CHANGING.\u000a", "date" : "2020-04-14 15:20:54 -0500", "id" : "7a05c93c702035d8a08b1121d7e927af63e186f3", "msg" : "Results were changed yesterday for some cases because thlprcp was", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "6f41957ecc761aa393647629c997eb41fdb01b58", "timestamp" : 1586993873000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have resolved all the issues surrounding recent CLUBB commits that\u000aremove \"use\" statements from the code. The commit 068a7b2 (April 8, 2020) was\u000athe commit before these refactorings started. When Lscale, Skw_zm, and thvm\u000aare passed out of CLUBB core, the code returns to a bit-for-bit match to commit\u000a068a7b2. However, rather than pass these variables out of advance_clubb_core,\u000ait is more convenient to recalculate them locally in clubb_driver. This\u000achanges results for (a) SILHS cases, owing to the change to Lscale, and (b) all\u000acases that advance microphysics, owing to the change to Skw_zm. The net result\u000ais that this commit is BIT_CHANGING. For cases that advance microphysics and/or\u000ause SILHS, the net result is BIT_CHANGING when compared to 068a7b2. For all\u000aother cases (BOMEX, etc.), the results are an exact match.\u000a\u000aIt is important to note that host models that use CLUBB (without SILHS) will not\u000abe affected by these changes. Host models that use SILHS will only be affected\u000aby the change to Lscale. However, this code has already been applied to CAM and\u000aE3SM, so the only changes will to SILHS code in SAM and WRF.\u000a\u000aLarson Group Issue Reference: #876.\u000a", "date" : "2020-04-15 18:37:53 -0500", "id" : "6f41957ecc761aa393647629c997eb41fdb01b58", "msg" : "I have resolved all the issues surrounding recent CLUBB commits that", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90" ], "commitId" : "3603a68adcce4975fbb94a240e11deacf53efe08", "timestamp" : 1587852453000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "I removed code that stops a run if the output time step is less than a minute.\u000a\u000aThis restriction is unnecessary if netcdf is used as the output file format.\u000a", "date" : "2020-04-25 17:07:33 -0500", "id" : "3603a68adcce4975fbb94a240e11deacf53efe08", "msg" : "I removed code that stops a run if the output time step is less than a minute.", "paths" : [ { "editType" : "edit", "file" : "output_netcdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "numerical_check.F90" ], "commitId" : "5249de8f91cd1474ce792ec4c8cd7536491a3c27", "timestamp" : 1588201621000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I removed references to variables_prognostic_module and\u000avariables_diagnostic_module from numerical_check.F90.\u000a\u000aCLUBB GitHub Issue Reference: #876.\u000a", "date" : "2020-04-29 18:07:01 -0500", "id" : "5249de8f91cd1474ce792ec4c8cd7536491a3c27", "msg" : "I removed references to variables_prognostic_module and", "paths" : [ { "editType" : "edit", "file" : "numerical_check.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "3b091ac242ff2f9062505f5bff01ead16d7612e0", "timestamp" : 1588279420000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Fixed a boo-boo.\u000a\u000aCLUBB GitHub Issue Reference: #876.\u000a", "date" : "2020-04-30 15:43:40 -0500", "id" : "3b091ac242ff2f9062505f5bff01ead16d7612e0", "msg" : "Fixed a boo-boo.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "36fe4d36102c43fa039370832fe42a56ded17dbc", "timestamp" : 1588284059000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "I set `l_diag_Lscale_from_tau = .true.` in source code\u000a\u000ain order to match the value in configurable_model_flags.in. \u000aI did so to avoid confusion, but also to check whether doing so\u000awill allow the WRF-CLUBB lines nightly plots to better match the CLUBB standalone lines.\u000a\u000aFor larson-group/wrf#105.\u000a", "date" : "2020-04-30 17:00:59 -0500", "id" : "36fe4d36102c43fa039370832fe42a56ded17dbc", "msg" : "I set `l_diag_Lscale_from_tau = .true.` in source code", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_clubb_utilities.F90" ], "commitId" : "29ad608ebd198f28b74757885b31ac09cf6d4989", "timestamp" : 1588625963000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I removed references to variable_diagnostic_module for various Kessler\u000aAutoconversion variables that are being output to statistics.\u000a\u000aCLUBB Git Issue Reference: #876.\u000a", "date" : "2020-05-04 15:59:23 -0500", "id" : "29ad608ebd198f28b74757885b31ac09cf6d4989", "msg" : "I removed references to variable_diagnostic_module for various Kessler", "paths" : [ { "editType" : "edit", "file" : "stats_clubb_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90", "clubb_api_module.F90" ], "commitId" : "06e6739507c93d6cc3c2aadb4d262a024b0f3eab", "timestamp" : 1588632211000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I removed the reference to use variables_diagnostic_module for Kh_zm\u000afound in setup_clubb_pdf_params.F90. The variable Kh_zm can easily be\u000apassed in instead.\u000a\u000aCLUBB Git Issue Reference: #876.\u000a", "date" : "2020-05-04 17:43:31 -0500", "id" : "06e6739507c93d6cc3c2aadb4d262a024b0f3eab", "msg" : "I removed the reference to use variables_diagnostic_module for Kh_zm", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "diagnose_correlations_module.F90" ], "commitId" : "6f2f593c5bd5306818c121ecfb043d9fc6687c9a", "timestamp" : 1588635738000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Removed a reference to variables_diagnostic_module for Kh_zm in\u000aapprox_w_corr. I passed the variable in instead.\u000a\u000aCLUBB Github Issue Reference: #876.\u000a", "date" : "2020-05-04 18:42:18 -0500", "id" : "6f2f593c5bd5306818c121ecfb043d9fc6687c9a", "msg" : "Removed a reference to variables_diagnostic_module for Kh_zm in", "paths" : [ { "editType" : "edit", "file" : "diagnose_correlations_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "efec25c6dc6ff1e4d8a4162088208012a97e0039", "timestamp" : 1588637567000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am able to remove references to variables_prognostic_module and\u000avariables_diagnostic_module from clubb_api_module.\u000a\u000aCLUBB GitHub Issue References: #876.\u000a", "date" : "2020-05-04 19:12:47 -0500", "id" : "efec25c6dc6ff1e4d8a4162088208012a97e0039", "msg" : "I am able to remove references to variables_prognostic_module and", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90", "advance_clubb_core_module.F90", "variables_diagnostic_module.F90", "model_flags.F90", "clubb_api_module.F90", "variables_prognostic_module.F90" ], "commitId" : "752666bf1bdfa947fe94b37b82aa090098df8cc3", "timestamp" : 1588697383000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I removed the l_use_ice_latent flag from the code, and along with it\u000aall the _frz variables.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GraDS output files from the previous revision for all\u000acases.\u000a\u000aCLUBB GitHub Issue Reference: #876.\u000a", "date" : "2020-05-05 11:49:43 -0500", "id" : "752666bf1bdfa947fe94b37b82aa090098df8cc3", "msg" : "I removed the l_use_ice_latent flag from the code, and along with it", "paths" : [ { "editType" : "edit", "file" : "variables_diagnostic_module.F90" }, { "editType" : "edit", "file" : "variables_prognostic_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "mixing_length.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "f36fde9791fa4f1ef14f301186af68df5e15ac32", "timestamp" : 1588697383000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I removed the l_use_ice_latent flag from the code, and along with it\u000aall the _frz variables.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GraDS output files from the previous revision for all\u000acases.\u000a\u000aCLUBB GitHub Issue Reference: #876.\u000a", "date" : "2020-05-05 11:49:43 -0500", "id" : "f36fde9791fa4f1ef14f301186af68df5e15ac32", "msg" : "I removed the l_use_ice_latent flag from the code, and along with it", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "variables_diagnostic_module.F90", "clubb_api_module.F90", "variables_prognostic_module.F90" ], "commitId" : "e81b40abf9a543b2a1bc51d8e266903d13a9fc2f", "timestamp" : 1588984893000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have completed the project of removing variables_prognostic_module\u000aand variables_diagnostic_module from the CLUBB code.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results found in GrADS output files from the previous revision\u000afor all cases.\u000a\u000aCLUBB Git Issue Reference: #876.\u000a", "date" : "2020-05-08 19:41:33 -0500", "id" : "e81b40abf9a543b2a1bc51d8e266903d13a9fc2f", "msg" : "I have completed the project of removing variables_prognostic_module", "paths" : [ { "editType" : "delete", "file" : "variables_diagnostic_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "delete", "file" : "variables_prognostic_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "1bdd34c6481b3c01f82b877f62a93ba370e5b9ed", "timestamp" : 1589154053000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "I added some missing threadprivate statements\u000a\u000ain order to eliminate a warning from the check_for_missing_threadprivate.py script.\u000a", "date" : "2020-05-10 18:40:53 -0500", "id" : "1bdd34c6481b3c01f82b877f62a93ba370e5b9ed", "msg" : "I added some missing threadprivate statements", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90" ], "commitId" : "e2826f017c87d3cd240aa7fc22795fe1a4ac161c", "timestamp" : 1589849026000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have taken the code from wp2_term_ta_all and placed it in the subroutine\u000awp2_term_ta. This combines the former, verbose description with the\u000anew optimized code. This also eliminates an unused function and gets rid\u000aof a compiler warning.\u000a", "date" : "2020-05-18 19:43:46 -0500", "id" : "e2826f017c87d3cd240aa7fc22795fe1a4ac161c", "msg" : "I have taken the code from wp2_term_ta_all and placed it in the subroutine", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90" ], "commitId" : "e0d302767e3733455f3dde87b01472c1eb9ee1a6", "timestamp" : 1589929080000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am updating wp3_term_ta_new_pdf_lhs to use the optimized code from\u000awp3_term_ta_new_pdf_lhs_all, and then I am removing\u000awp3_term_ta_new_pdf_lhs_all from the code. This eliminates a compiler\u000aerror.\u000a", "date" : "2020-05-19 17:58:00 -0500", "id" : "e0d302767e3733455f3dde87b01472c1eb9ee1a6", "msg" : "I am updating wp3_term_ta_new_pdf_lhs to use the optimized code from", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90" ], "commitId" : "df5510e777de2b9360c836491d81db6920bf07be", "timestamp" : 1590592049000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "This commit is BIT_CHANGING. It makes the parameter values in parameters_tunable.F90 agree with those in tunable_parameters.in\u000a", "date" : "2020-05-27 10:07:29 -0500", "id" : "df5510e777de2b9360c836491d81db6920bf07be", "msg" : "This commit is BIT_CHANGING. It makes the parameter values in parameters_tunable.F90 agree with those in tunable_parameters.in", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "advance_xp2_xpyp_module.F90" ], "commitId" : "249ed5dd4ff58c54c3bcd841658e556f7ee999b3", "timestamp" : 1591212970000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am making the change of using tau_wp2_zm to damp up2 and vp2,\u000arather than tau_xp2_zm, when l_diag_Lscale_from_tau is enabled.\u000aThe previous code was causing up2 and vp2 to become large and\u000aunstable.\u000a\u000aAdditionally, I placed a limiter on tau based on Lscale_max in\u000athe CLUBB code for the situation where l_diag_Lscale_from_tau\u000ais enabled. This will help constrict tau, and thereby the\u000amagnitudes of turbulent fields, in a host model as grid spacing\u000astarts to become arbitrarily small and resolved features take\u000aover.\u000a\u000aThis revision is BIT_CHANGING.\u000a", "date" : "2020-06-03 14:36:10 -0500", "id" : "249ed5dd4ff58c54c3bcd841658e556f7ee999b3", "msg" : "I am making the change of using tau_wp2_zm to damp up2 and vp2,", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "model_flags.F90", "advance_xm_wpxp_module.F90", "clubb_api_module.F90", "pdf_closure_module.F90", "setup_clubb_pdf_params.F90" ], "commitId" : "a59618b0d5bb86a20829495f774d7b95b59fa7c0", "timestamp" : 1591892411000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added the integer flags iiPDF_type and ipdf_call_placement\u000ato the clubb_config_flags type. They have also been added to\u000aconfigurable_model_flags.in.\u000a\u000aThe results in GrADS output files from this revision are an exact\u000amatch to the result in GrADS output files from the previous revision\u000afor all cases.\u000a", "date" : "2020-06-11 11:20:11 -0500", "id" : "a59618b0d5bb86a20829495f774d7b95b59fa7c0", "msg" : "I have added the integer flags iiPDF_type and ipdf_call_placement", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "pdf_closure_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "d4e1cc78a447eda4ffd31d480db1fb7c0c6eefd6", "timestamp" : 1591892411000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have added the integer flags iiPDF_type and ipdf_call_placement\u000ato the clubb_config_flags type. They have also been added to\u000aconfigurable_model_flags.in.\u000a\u000aThe results in GrADS output files from this revision are an exact\u000amatch to the result in GrADS output files from the previous revision\u000afor all cases.\u000a", "date" : "2020-06-11 11:20:11 -0500", "id" : "d4e1cc78a447eda4ffd31d480db1fb7c0c6eefd6", "msg" : "I have added the integer flags iiPDF_type and ipdf_call_placement", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "935b507b50e147ce7e4cb1aefde6b167312b5aa0", "timestamp" : 1591904998000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am going to make primary PDF type options and primary PDF call\u000aposition options available to host models.\u000a", "date" : "2020-06-11 14:49:58 -0500", "id" : "935b507b50e147ce7e4cb1aefde6b167312b5aa0", "msg" : "I am going to make primary PDF type options and primary PDF call", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90", "advance_xp2_xpyp_module.F90", "stats_clubb_utilities.F90", "lapack_wrap.F90" ], "commitId" : "03a057fc0fa742bf5903cebd6c39a6cabe084a54", "timestamp" : 1592253292000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added E3SM customizations to CLUBB's master branch. This is meant\u000afor updating CLUBB in the E3SM master branch.\u000a", "date" : "2020-06-15 15:34:52 -0500", "id" : "03a057fc0fa742bf5903cebd6c39a6cabe084a54", "msg" : "I added E3SM customizations to CLUBB's master branch. 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Re-using the tunable parameters for gamma here\u000amakes sense, since it's the same concept and this makes tuning\u000aeasier.\u000a", "date" : "2020-06-18 16:52:37 -0500", "id" : "29c5dd3a6fd55e6a294aed63e5e6029810e970fa", "msg" : "I am changing the new hybrid PDF's calculation of F_w to use", "paths" : [ { "editType" : "edit", "file" : "new_hybrid_pdf_main.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "bfde3dd3cab8d57d726caebb7544a3f171dd24bc", "timestamp" : 1592857658000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the xp3 calculation for PDF types other than ADG1.\u000a\u000aADG1 is stuck into using the LG 2005 ansatz, exactly as written.\u000a\u000aOther PDF types are not stuck using this. Rather than re-invent the wheel,\u000athese other PDF types can still use the LG 2005 ansatz equation, but\u000asigma_sqd_w_zt (specific to ADG1) has been replaced with a tunable function\u000arelavant to other PDF types. This tunable function is called xp3_coef_fnc.\u000a\u000aThe results in GrADS output files from the previous revision are an exact match\u000ato the results in GrADS output files from the current revision for all cases\u000afor the default ADG1 PDF.\u000a", "date" : "2020-06-22 15:27:38 -0500", "id" : "bfde3dd3cab8d57d726caebb7544a3f171dd24bc", "msg" : "I updated the xp3 calculation for PDF types other than ADG1.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90" ], "commitId" : "b9a3fc1cb5be1eedbf0543b5a29bf413d833246b", "timestamp" : 1592922724000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "This xp3_coef_ parameters produce new hybrid PDF results similar to the old\u000aones for a starting point.\u000a", "date" : "2020-06-23 09:32:04 -0500", "id" : "b9a3fc1cb5be1eedbf0543b5a29bf413d833246b", "msg" : "This xp3_coef_ parameters produce new hybrid PDF results similar to the old", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "advance_clubb_core_module.F90", "parameter_indices.F90" ], "commitId" : "17b61c278e074b0f13c0b7a3c7249b68c911d096", "timestamp" : 1592937236000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added the 2 new parameters in the simple xp3 equation (for PDF\u000atypes other than ADG1) to the list of CLUBB tunable parameters.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision for all\u000acases.\u000a", "date" : "2020-06-23 13:33:56 -0500", "id" : "17b61c278e074b0f13c0b7a3c7249b68c911d096", "msg" : "I added the 2 new parameters in the simple xp3 equation (for PDF", "paths" : [ { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "c0b90072ce137d77b0354d2884c936f1cfec00b0", "timestamp" : 1592937236000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added the 2 new parameters in the simple xp3 equation (for PDF\u000atypes other than ADG1) to the list of CLUBB tunable parameters.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision for all\u000acases.\u000a", "date" : "2020-06-23 13:33:56 -0500", "id" : "c0b90072ce137d77b0354d2884c936f1cfec00b0", "msg" : "I added the 2 new parameters in the simple xp3 equation (for PDF", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90" ], "commitId" : "ec26fc272f08735e68e710da38363b7efd0dd57c", "timestamp" : 1594325433000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I have combined the wp3_term_ta_ADG1_lhs and wp3_term_ta_ADG1_lhs_all\u000aroutines into one subroutine. This is done to remove a compiler warning,\u000asimplify the code, and prep the code for the wp3 partial upwinding.\u000a\u000aThe results in GrADS output files from this revision are an exact match\u000ato the results in GrADS output files from the previous revision for\u000aall cases.\u000a\u000aLarson Group GitHub Issue Reference: #877.\u000a", "date" : "2020-07-09 15:10:33 -0500", "id" : "ec26fc272f08735e68e710da38363b7efd0dd57c", "msg" : "I have combined the wp3_term_ta_ADG1_lhs and wp3_term_ta_ADG1_lhs_all", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_clubb_core_module.F90" ], "commitId" : "306b627bcb23d1b499a98adeaed955ca6abb177f", "timestamp" : 1594340218000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added the partially upwinded implementation of the wp3 turbulent advection\u000aterm for ADG1 to the code. It is turned off by default.\u000a\u000aThe results in GrADS output files from this revision are an exact match to the\u000aresults in GrADS output files from the previous revision for all cases.\u000a\u000aLarson Group GitHub Issue Reference: #877.\u000a", "date" : "2020-07-09 19:16:58 -0500", "id" : "306b627bcb23d1b499a98adeaed955ca6abb177f", "msg" : "I added the partially upwinded implementation of the wp3 turbulent advection", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "mixing_length.F90", "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "advance_xm_wpxp_module.F90", "output_netcdf.F90", "Skx_module.F90", "pdf_closure_module.F90", "adg1_adg2_3d_luhar_pdf.F90", "calc_roots.F90", "surface_varnce_module.F90", "mono_flux_limiter.F90" ], "commitId" : 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This commit shouldn't be BIT_CHANGING, but the previous commit was (and was supposed to be).\u000a", "date" : "2020-08-20 14:04:48 -0500", "id" : "7466fd80923756687e034cef32675207de0dedfb", "msg" : "Updating previous commit to not have lines over 100 characters. This commit shouldn't be BIT_CHANGING, but the previous commit was (and was supposed to be).", "paths" : [ { "editType" : "edit", "file" : "stats_sfc_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90", "output_grads.F90" ], "commitId" : "4e98f884fb43d06669dce6e29513e936baed3ecf", "timestamp" : 1598309445000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/isenfireldc", "fullName" : "isenfireldc" }, "authorEmail" : "isenfireldc@gmail.com", "comment" : "Adds more debug lines\u000a\u000aIssue #881\u000a", "date" : "2020-08-24 17:50:45 -0500", "id" : "4e98f884fb43d06669dce6e29513e936baed3ecf", "msg" : "Adds more debug lines", "paths" : [ { "editType" : "edit", "file" : "output_grads.F90" }, { "editType" : "edit", "file" : "output_netcdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90", "output_grads.F90" ], "commitId" : "e3e4966b3e37f727fbee943081a479a078b4047d", "timestamp" : 1598309843000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/isenfireldc", "fullName" : "isenfireldc" }, "authorEmail" : "isenfireldc@gmail.com", "comment" : "Removes debug lines\u000a\u000aIssue #881\u000a", "date" : "2020-08-24 17:57:23 -0500", "id" : "e3e4966b3e37f727fbee943081a479a078b4047d", "msg" : "Removes debug lines", "paths" : [ { "editType" : "edit", "file" : "output_netcdf.F90" }, { "editType" : "edit", "file" : "output_grads.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90" ], "commitId" : "27cebcd0b77b6b1a826b3d9ec6edc182131e52ca", "timestamp" : 1598382981000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/isenfireldc", "fullName" : "isenfireldc" }, "authorEmail" : "isenfireldc@gmail.com", "comment" : "Adds debug lines and changes format\u000a\u000aIssue #881\u000a", "date" : "2020-08-25 14:16:21 -0500", "id" : "27cebcd0b77b6b1a826b3d9ec6edc182131e52ca", "msg" : "Adds debug lines and changes format", "paths" : [ { "editType" : "edit", "file" : "output_netcdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90" ], "commitId" : "e69122b8c716881ac5818694b75940a10ae4c378", "timestamp" : 1598384297000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/isenfireldc", "fullName" : "isenfireldc" }, "authorEmail" : "isenfireldc@gmail.com", "comment" : "Modifies debug line\u000a\u000aIssue #881\u000a", "date" : "2020-08-25 14:38:17 -0500", "id" : "e69122b8c716881ac5818694b75940a10ae4c378", "msg" : "Modifies debug line", "paths" : [ { "editType" : "edit", "file" : "output_netcdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90" ], "commitId" : "52244022211caf4b18ed05a98bc946b8c8e2f1bf", "timestamp" : 1598388387000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/isenfireldc", "fullName" : "isenfireldc" }, "authorEmail" : "isenfireldc@gmail.com", "comment" : "Modifies debug line\u000a\u000aIssue #881\u000a", "date" : "2020-08-25 15:46:27 -0500", "id" : "52244022211caf4b18ed05a98bc946b8c8e2f1bf", "msg" : "Modifies debug line", "paths" : [ { "editType" : "edit", "file" : "output_netcdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90" ], "commitId" : "5c207cd1008c3a8d8b6961acfca06ffd42ebef38", "timestamp" : 1598472032000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/isenfireldc", "fullName" : "isenfireldc" }, "authorEmail" : "isenfireldc@gmail.com", "comment" : "Initialize ncf%ntimes to 0 when opening netcdf for writing\u000a\u000aIssue #881\u000a", "date" : "2020-08-26 15:00:32 -0500", "id" : "5c207cd1008c3a8d8b6961acfca06ffd42ebef38", "msg" : "Initialize ncf%ntimes to 0 when opening netcdf for writing", "paths" : [ { "editType" : "edit", "file" : "output_netcdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90" ], "commitId" : "2855a9acb24ba4238edd801a4cd8633567615332", "timestamp" : 1598474183000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/isenfireldc", "fullName" : "isenfireldc" }, "authorEmail" : "isenfireldc@gmail.com", "comment" : "Removes debug lines\u000a\u000aIssue #881\u000a", "date" : "2020-08-26 15:36:23 -0500", "id" : "2855a9acb24ba4238edd801a4cd8633567615332", "msg" : "Removes debug lines", "paths" : [ { "editType" : "edit", "file" : "output_netcdf.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stat_file_module.F90" ], "commitId" : "1d2c3305ba6770d82b958af367a53bc676361dd8", "timestamp" : 1598555787000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/isenfireldc", "fullName" : "isenfireldc" }, "authorEmail" : "isenfireldc@gmail.com", "comment" : "Changes length of units variable in stat_file_module from 20 to 25\u000aBIT_CHANGING\u000a\u000aThe previous length of 20 was cutting off the last character for the unit\u000a`kg^{3} kg^{-3} s^{-1}`, which was causing checkBudget.py to fail. I upped it\u000ato 25 because that is a nice number.\u000a\u000aIssue #881\u000a", "date" : "2020-08-27 14:16:27 -0500", "id" : "1d2c3305ba6770d82b958af367a53bc676361dd8", "msg" : "Changes length of units variable in stat_file_module from 20 to 25", "paths" : [ { "editType" : "edit", "file" : "stat_file_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_2D_samples_module.F90" ], "commitId" : "e39f3a9976193002fed4fa62d4390801cb80a24c", "timestamp" : 1600356560000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "This commit resolves issue #885 and gets the 2D output working, if the relevant flags are set to true. A duplicated allocate statement is eliminated, and to ensure that the 2D output occurs at the right intervals (every stats_tout seconds) I have also added approrpiate if statements at the beginning of the 2D output subroutines.\u000a", "date" : "2020-09-17 10:29:20 -0500", "id" : "e39f3a9976193002fed4fa62d4390801cb80a24c", "msg" : "This commit resolves issue #885 and gets the 2D output working, if the relevant flags are set to true. A duplicated allocate statement is eliminated, and to ensure that the 2D output occurs at the right intervals (every stats_tout seconds) I have also added approrpiate if statements at the beginning of the 2D output subroutines.", "paths" : [ { "editType" : "edit", "file" : "output_2D_samples_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "silhs_api_module.F90" ], "commitId" : "f29953024a9efa8f3b396d8020a8588c691ef9a2", "timestamp" : 1600450428000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Adding API subroutines for latin_hypercube_2D_output and latin_hypercube_2D_close. This will aid in implementing the SILHS 2D output subroutines in host models. The new API subroutines necessitated some minor changes in clubb_driver.F90 as well. Mainly relevant to https://github.com/larson-group/wrf/issues/110 (WRF repo), but see also #885 (CLUBB repo).\u000a", "date" : "2020-09-18 12:33:48 -0500", "id" : "f29953024a9efa8f3b396d8020a8588c691ef9a2", "msg" : "Adding API subroutines for latin_hypercube_2D_output and latin_hypercube_2D_close. This will aid in implementing the SILHS 2D output subroutines in host models. The new API subroutines necessitated some minor changes in clubb_driver.F90 as well. Mainly relevant to https://github.com/larson-group/wrf/issues/110 (WRF repo), but see also #885 (CLUBB repo).", "paths" : [ { "editType" : "edit", "file" : "silhs_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "faaa09a9dd4400fece94bd30bdef37d554948360", "timestamp" : 1600849530000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the stats code in setup_clubb_pdf_params.F90 and in\u000alatin_hypercube_driver_module.F90 to loop over stat_update_var_pt\u000aup to level nz, rather than call stat_update_var. This is done\u000ato allow E3SM-CLUBB-SILHS to run without issue. In that code base,\u000aSILHS and CLUBB have differing numbers of vertical levels.\u000a\u000aThe results in output files from this revision are an exact match\u000ato the results in output files from the previous revision for all\u000acases.\u000a", "date" : "2020-09-23 03:25:30 -0500", "id" : "faaa09a9dd4400fece94bd30bdef37d554948360", "msg" : "I updated the stats code in setup_clubb_pdf_params.F90 and in", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "latin_hypercube_driver_module.F90" ], "commitId" : "b61ffdbef6993ce180a00aff3936f77531639631", "timestamp" : 1600849530000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I updated the stats code in setup_clubb_pdf_params.F90 and in\u000alatin_hypercube_driver_module.F90 to loop over stat_update_var_pt\u000aup to level nz, rather than call stat_update_var. This is done\u000ato allow E3SM-CLUBB-SILHS to run without issue. In that code base,\u000aSILHS and CLUBB have differing numbers of vertical levels.\u000a\u000aThe results in output files from this revision are an exact match\u000ato the results in output files from the previous revision for all\u000acases.\u000a", "date" : "2020-09-23 03:25:30 -0500", "id" : "b61ffdbef6993ce180a00aff3936f77531639631", "msg" : "I updated the stats code in setup_clubb_pdf_params.F90 and in", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "silhs_api_module.F90", "latin_hypercube_driver_module.F90", "output_2D_samples_module.F90" ], "commitId" : "e0f1e9b683592ca8513e732120a20df0d2438f1e", "timestamp" : 1601385131000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "This commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the \"lh_sample_number\" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information.\u000a\u000aAlso, \"rlat\" and \"rlon\" are changed to \"lat_vals\" and \"lon_vals\" throughout the CLUBB repo for clarity. Most of the files changes are because of this. (Some host models, e.g. WRF, may still use \"rlat\" and \"rlon\" in the code where they interface with CLUBB.)\u000a\u000aSee issue #887.\u000a", "date" : "2020-09-29 08:12:11 -0500", "id" : "e0f1e9b683592ca8513e732120a20df0d2438f1e", "msg" : "This commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the \"lh_sample_number\" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information.", "paths" : [ { "editType" : "edit", "file" : "silhs_api_module.F90" }, { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" }, { "editType" : "edit", "file" : "output_2D_samples_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "output_netcdf.F90", "output_grads.F90", "stats_type_utilities.F90", "stat_file_module.F90", "stats_clubb_utilities.F90", "clubb_api_module.F90" ], "commitId" : "6482c644791940f0cad2e1cd53c61844f6f56500", "timestamp" : 1601385131000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "This commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the \"lh_sample_number\" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information.\u000a\u000aAlso, \"rlat\" and \"rlon\" are changed to \"lat_vals\" and \"lon_vals\" throughout the CLUBB repo for clarity. Most of the files changes are because of this. (Some host models, e.g. WRF, may still use \"rlat\" and \"rlon\" in the code where they interface with CLUBB.)\u000a\u000aSee issue #887.\u000a", "date" : "2020-09-29 08:12:11 -0500", "id" : "6482c644791940f0cad2e1cd53c61844f6f56500", "msg" : "This commit primarily overhauls the way the 2D SILHS samples are output to netCDF. Now, instead of being output along the latitude dimension in a 4d netCDF file, the SILHS samples are output along the \"lh_sample_number\" dimension of a 5d netCDF file. Furthermore the lat/lon dimensions of the 2D SILHS sample files are now output with the correct lat/lon information.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "output_netcdf.F90" }, { "editType" : "edit", "file" : "output_grads.F90" }, { "editType" : "edit", "file" : "stats_type_utilities.F90" }, { "editType" : "edit", "file" : "stat_file_module.F90" }, { "editType" : "edit", "file" : "stats_clubb_utilities.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "latin_hypercube_driver_module.F90" ], "commitId" : "4fabcab89058c3d216ee6c6ef3ec977e14476e10", "timestamp" : 1601407797000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Undoing accidental find and replace. larson-group/cam#129\u000a", "date" : "2020-09-29 14:29:57 -0500", "id" : "4fabcab89058c3d216ee6c6ef3ec977e14476e10", "msg" : "Undoing accidental find and replace. larson-group/cam#129", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90", "stats_sfc_module.F90", "stats_zt_module.F90" ], "commitId" : "835b96e74437f9a1ecd703a6682c75a19568c7c3", "timestamp" : 1601659393000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/nchief", "fullName" : "nchief" }, "authorEmail" : "nchief@gmail.com", "comment" : "Updated titles listed for change here: https://github.com/larson-group/sys_admin/issues/542#issuecomment-685963832\u000aMoved wp2thvp just after the Cloud water contribution to wp2thvp panel\u000a", "date" : "2020-10-02 12:23:13 -0500", "id" : "835b96e74437f9a1ecd703a6682c75a19568c7c3", "msg" : "Updated titles listed for change here: https://github.com/larson-group/sys_admin/issues/542#issuecomment-685963832", "paths" : [ { "editType" : "edit", "file" : "stats_sfc_module.F90" }, { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zt_module.F90" ], "commitId" : "16a52f15f8eec9cd96250e2824c9902bfe9256d5", "timestamp" : 1601737119000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/strike", "fullName" : "strike" }, "authorEmail" : "strike@uwm.edu", "comment" : "Fix super serious 1 character bug that broke all of the things\u000a", "date" : "2020-10-03 09:58:39 -0500", "id" : "16a52f15f8eec9cd96250e2824c9902bfe9256d5", "msg" : "Fix super serious 1 character bug that broke all of the things", "paths" : [ { "editType" : "edit", "file" : "stats_zt_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "parameter_indices.F90", "clubb_api_module.F90", "advance_xm_wpxp_module.F90", "stats_variables.F90", "stats_zm_module.F90", "parameters_tunable.F90", "advance_helper_module.F90" ], "commitId" : "09188158a0ffe085e949f4497fd417be6fca2c50", "timestamp" : 1602204599000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am committing Zhun's changes to the CLUBB portion of his\u000aE3SM-CLUBB-SILHS branch to the clubb_E3SM_SILHS_branch_merge\u000abranch of CLUBB. 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The only parameters changed are the ones\u000athat are found in the namelists for both CAM (master) and E3SM (master).\u000a", "date" : "2020-10-26 17:29:15 -0500", "id" : "27379d1a62179da1a674560361b9dd348b86215c", "msg" : "I modified tunable_parameters.in to use some of the parameter values that", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90" ], "commitId" : "121e67c4b158a54e87e7817956bb4a12f706e9c3", "timestamp" : 1604414984000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update stats_zm_module.F90\u000a\u000aAdded apostrophe to thl'thv' for consistency.\u000a", "date" : "2020-11-03 08:49:44 -0600", "id" : "121e67c4b158a54e87e7817956bb4a12f706e9c3", "msg" : "Update stats_zm_module.F90", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "parameter_indices.F90" ], "commitId" : "b65048d5fb0571e486c365ef27f0863fda44a2d0", "timestamp" : 1604690665000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added Cx_min, Cx_max, Richardson_num_min, and Richardson_num_max\u000ato the list of CLUBB's tunable parameters.\u000a", "date" : "2020-11-06 13:24:25 -0600", "id" : "b65048d5fb0571e486c365ef27f0863fda44a2d0", "msg" : "I added Cx_min, Cx_max, Richardson_num_min, and Richardson_num_max", "paths" : [ { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "9b55d6c312e838c36b6f4ca9938b38edb5e99a37", "timestamp" : 1604690665000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added Cx_min, Cx_max, Richardson_num_min, and Richardson_num_max\u000ato the list of CLUBB's tunable parameters.\u000a", "date" : "2020-11-06 13:24:25 -0600", "id" : "9b55d6c312e838c36b6f4ca9938b38edb5e99a37", "msg" : "I added Cx_min, Cx_max, Richardson_num_min, and Richardson_num_max", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "8d20eb1aa94009fcd9c89f703d10e9ba438e4845", "timestamp" : 1604691057000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I connected the new tunable parameters to advance_helper_module.F90.\u000a", "date" : "2020-11-06 13:30:57 -0600", "id" : "8d20eb1aa94009fcd9c89f703d10e9ba438e4845", "msg" : "I connected the new tunable parameters to advance_helper_module.F90.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "8494d30c9d26bfdf43013b71673ac079f3e3e869", "timestamp" : 1605747985000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added l_use_shear_Richardson to CLUBB's configurable model flags.\u000a", "date" : "2020-11-18 19:06:25 -0600", "id" : "8494d30c9d26bfdf43013b71673ac079f3e3e869", "msg" : "I added l_use_shear_Richardson to CLUBB's configurable model flags.", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "model_flags.F90", "clubb_api_module.F90", "advance_helper_module.F90" ], "commitId" : "25ed680064c8ab4ee4f74c34b440257faf9fd70e", "timestamp" : 1605747985000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I added l_use_shear_Richardson to CLUBB's configurable model flags.\u000a", "date" : "2020-11-18 19:06:25 -0600", "id" : "25ed680064c8ab4ee4f74c34b440257faf9fd70e", "msg" : "I added l_use_shear_Richardson to CLUBB's configurable model flags.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "b0bbc88d76bc5672a18857ef2f975cfd8ee3fa9a", "timestamp" : 1606141860000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Adding linear multistep method (LMM) stepping flag (l_lmm_stepping) to provide capability of overstepping-and-then-averaging results from advance_wp2_wp3, advance_xm_xpwp, and advance_xp2_xpyp. 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Flag is set to false by default so has no impact on standard runs.", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "model_flags.F90", "clubb_api_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "3dc70ce717348532fbc888574f7f0825ea8a401e", "timestamp" : 1606141860000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Adding linear multistep method (LMM) stepping flag (l_lmm_stepping) to provide capability of overstepping-and-then-averaging results from advance_wp2_wp3, advance_xm_xpwp, and advance_xp2_xpyp. This is intended to help smooth high-frequency oscillations. 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Flag is set to false by default so has no impact on standard runs.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "5886ca801202a25157d12ae49f47f9ece1ef749a", "timestamp" : 1606328447000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I forgot to add rtp2_clip_coef to tunable_parameters.in (this doesn't affect\u000athe results, but it still should be placed there).\u000a", "date" : "2020-11-25 12:20:47 -0600", "id" : "5886ca801202a25157d12ae49f47f9ece1ef749a", "msg" : "I forgot to add rtp2_clip_coef to tunable_parameters.in (this doesn't affect", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "954c6c2dbef62f96755207776d56cbd9b4e9cb5d", "timestamp" : 1606338607000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "In order to prevent dycoms2_rf02_so from crashing,\u000aI replaced C7_Skw_fnc by 0.7 in upwp_pr4 and vpwp_pr4.\u000aThis prevents an excessive wind gradient (dum/dz) from\u000aforming near the lower surface.\u000a\u000aThis commit is BIT_CHANGING. For larson-group/e3sm#30.\u000a", "date" : "2020-11-25 15:10:07 -0600", "id" : "954c6c2dbef62f96755207776d56cbd9b4e9cb5d", "msg" : "In order to prevent dycoms2_rf02_so from crashing,", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "e65f26062f1a7b61581f530a81532795bff72cbd", "timestamp" : 1606338983000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I updated the recording of the budget terms for upwp_pr4 and vpwp_pr4.\u000aThe simulation should be BFB, but because the budget term\u000ais updated consistently now, this commit is BIT_CHANGING.\u000aFor larson-group/e3sm#30.\u000a", "date" : "2020-11-25 15:16:23 -0600", "id" : "e65f26062f1a7b61581f530a81532795bff72cbd", "msg" : "I updated the recording of the budget terms for upwp_pr4 and vpwp_pr4.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "cacdab660c210f30178d483c8545d39a7b2568ab", "timestamp" : 1606763229000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Adding the smooth_min and smooth_max functions to the repo. These are not yet implemented in CLUBB but are now available for use and testing. See issue #894.\u000a", "date" : "2020-11-30 13:07:09 -0600", "id" : "cacdab660c210f30178d483c8545d39a7b2568ab", "msg" : "Adding the smooth_min and smooth_max functions to the repo. These are not yet implemented in CLUBB but are now available for use and testing. See issue #894.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_helper_module.F90" ], "commitId" : "c2066af74a5d49e40558fc1d59352f118028c96c", "timestamp" : 1606772963000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Adding some comments describing zm and zt for the new interface functions, and fixing a problem in the \"array_sclr\" versions of the functions. See issue #894.\u000a", "date" : "2020-11-30 15:49:23 -0600", "id" : "c2066af74a5d49e40558fc1d59352f118028c96c", "msg" : "Adding some comments describing zm and zt for the new interface functions, and fixing a problem in the \"array_sclr\" versions of the functions. See issue #894.", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "transform_to_pdf_module.F90", "latin_hypercube_driver_module.F90" ], "commitId" : "13f11f11a25ca3c19dd944fc13003b1542e86d20", "timestamp" : 1606856173000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Modifying some array dimensions to speed up multiply_Cholesky. 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It is BIT_CHANGING, not only because the results change (only very slightly in some cases, but more significantly in sensitive cases like ARM_97, RICO, etc.) but also because some of the old tau_*_zm or tau_*_zt output variables are replaced with invrs_tau_* variables, hence the netcdf files will differ and there are minor changes to stats input files. Spurious source test also needed to be slightly modified to accommodate a new variable fed into the advance_xm_wpxp subroutine.\u000a\u000aThere is also some minor cleanup.\u000a\u000aSee issue #899.\u000a", "date" : "2020-12-10 09:48:22 -0600", "id" : "51f8757f2ece02721c4c95797df4b6738111fead", "msg" : "This commit replaces division by tau with multiplication by inverse tau in most cases. It is BIT_CHANGING, not only because the results change (only very slightly in some cases, but more significantly in sensitive cases like ARM_97, RICO, etc.) but also because some of the old tau_*_zm or tau_*_zt output variables are replaced with invrs_tau_* variables, hence the netcdf files will differ and there are minor changes to stats input files. Spurious source test also needed to be slightly modified to accommodate a new variable fed into the advance_xm_wpxp subroutine.", "paths" : [ { "editType" : "edit", "file" : "stats_zt_module.F90" }, { "editType" : "edit", "file" : "advance_xp3_module.F90" }, { "editType" : "edit", "file" : "stats_variables.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "d08fdc395bde39bc7b72378b25216f1957c06ec9", "timestamp" : 1607641700000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am committing a bug fix to the invrs_tau_zm equation that was\u000aintroduced with the code merge from E3SM. I am also adding some\u000achanges to the clubb_api_module that should have been brought over\u000aat that time. This commit is BIT_CHANGING with the bug fix.\u000a", "date" : "2020-12-10 17:08:20 -0600", "id" : "d08fdc395bde39bc7b72378b25216f1957c06ec9", "msg" : "I am committing a bug fix to the invrs_tau_zm equation that was", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "stats_zm_module.F90" ], "commitId" : "fc1a13766333b94e05f14ffbbd1ebbc88393c58d", "timestamp" : 1607984534000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "CLUBB and pyplotgen changes:\u000a\u000a1. Putting smoothing on thlm before the Brunt-Vaisala frequency calculation. We find this helps smooth oscillations in that variable, see issue #894. Also fixing spelling mistake in stats_zm_module.F90, and adding bv_freq_sqd to nightly_stats.in. For all these reasons this commit is BIT_CHANGING, but only the thlm smoothing will change the physical results.\u000a\u000a2. Pyplotgen: I moved Brunt-Vaisala to VariableGroupBase.py so it should show up in the nightly plots, I got rid of VariableGroupTaus from the default Case definitions, and made a couple other minor changes including making the solid line thicker for standard CLUBB plots.\u000a", "date" : "2020-12-14 16:22:14 -0600", "id" : "fc1a13766333b94e05f14ffbbd1ebbc88393c58d", "msg" : "CLUBB and pyplotgen changes:", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_xp3_module.F90", "advance_clubb_core_module.F90", "advance_windm_edsclrm_module.F90", "advance_xm_wpxp_module.F90" ], "commitId" : "dc88808be3203de9536f2dbe34a77dc209d90338", "timestamp" : 1608165333000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I fixed the LMM stepping bug that was affecting E3SM (because\u000al_predict_upwp_vpwp is false over there) in advance_xm_wpxp_module.F90.\u000aI also added it to all predictive fields.\u000a\u000aThe results in NetCDF output files from this revision is an exact match to the\u000aresults in NetCDF output files from the previous revision for all cases because\u000aLMM stepping is turned off by default.\u000a", "date" : "2020-12-16 18:35:33 -0600", "id" : "dc88808be3203de9536f2dbe34a77dc209d90338", "msg" : "I fixed the LMM stepping bug that was affecting E3SM (because", "paths" : [ { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_xp3_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xm_wpxp_module.F90" ], "commitId" : "378b99093fca66e7223cae49ad0ca088e0f0148a", "timestamp" : 1608165625000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "Fixed alignment.\u000a", "date" : "2020-12-16 18:40:25 -0600", "id" : "378b99093fca66e7223cae49ad0ca088e0f0148a", "msg" : "Fixed alignment.", "paths" : [ { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameters_tunable.F90", "advance_clubb_core_module.F90", "parameter_indices.F90", "model_flags.F90", "clubb_api_module.F90" ], "commitId" : "df97ac5bcdd52b069a9cc74f9321c3ffb5cc6981", "timestamp" : 1608225144000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "This commit introduces a new flag, l_e3sm_config, which enables the user to switch on or off some of the changes introduced in connection with the E3SM merge (see commit https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). It also introduces two new tunable parameters, C_invrs_tau_wpxp_Ri and C_invrs_tau_wpxp_N2_thresh, to replace two \"magic numbers\" in the code. The primary code changes are in advance_clubb_core_module.F90.\u000a\u000aThis is a BIT_CHANGING commit due to the new parameters affecting the netcdf output but the physical results should remain the same for now.\u000a\u000aSee relevant issues #894 and #897.\u000a", "date" : "2020-12-17 11:12:24 -0600", "id" : "df97ac5bcdd52b069a9cc74f9321c3ffb5cc6981", "msg" : "This commit introduces a new flag, l_e3sm_config, which enables the user to switch on or off some of the changes introduced in connection with the E3SM merge (see commit https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). It also introduces two new tunable parameters, C_invrs_tau_wpxp_Ri and C_invrs_tau_wpxp_N2_thresh, to replace two \"magic numbers\" in the code. The primary code changes are in advance_clubb_core_module.F90.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in", "configurable_model_flags.in" ], "commitId" : "ad7085721305de055a23bc851cd6b77f9f9afd95", "timestamp" : 1608225144000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "This commit introduces a new flag, l_e3sm_config, which enables the user to switch on or off some of the changes introduced in connection with the E3SM merge (see commit https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). It also introduces two new tunable parameters, C_invrs_tau_wpxp_Ri and C_invrs_tau_wpxp_N2_thresh, to replace two \"magic numbers\" in the code. The primary code changes are in advance_clubb_core_module.F90.\u000a\u000aThis is a BIT_CHANGING commit due to the new parameters affecting the netcdf output but the physical results should remain the same for now.\u000a\u000aSee relevant issues #894 and #897.\u000a", "date" : "2020-12-17 11:12:24 -0600", "id" : "ad7085721305de055a23bc851cd6b77f9f9afd95", "msg" : "This commit introduces a new flag, l_e3sm_config, which enables the user to switch on or off some of the changes introduced in connection with the E3SM merge (see commit https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). It also introduces two new tunable parameters, C_invrs_tau_wpxp_Ri and C_invrs_tau_wpxp_N2_thresh, to replace two \"magic numbers\" in the code. The primary code changes are in advance_clubb_core_module.F90.", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" }, { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "parameter_indices.F90" ], "commitId" : "034049b46393a096da28099eef60ca5801a7f329", "timestamp" : 1608239444000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update parameter_indices.F90\u000a\u000aSwitching the order of two variables. Was causing the values of these parameters to be reversed in some output files (but no effect on physical results).\u000a", "date" : "2020-12-17 15:10:44 -0600", "id" : "034049b46393a096da28099eef60ca5801a7f329", "msg" : "Update parameter_indices.F90", "paths" : [ { "editType" : "edit", "file" : "parameter_indices.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in", "tunable_parameters.in" ], "commitId" : "f1d2e7953ef08774f436bcdc2991c70c9676b956", "timestamp" : 1608322618000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Setting parameters and flags to be consistent with the CLUBB repo prior to the October 8 commit merging some E3SM code (https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). This should help to basically recover the plots from before the merge, which is useful for single-column model testing.\u000a\u000aThe parameters and flags for the E3SM results can be found in the input/tunable_parameters_e3sm/ folder.\u000a\u000aSee issue #897.\u000a", "date" : "2020-12-18 14:16:58 -0600", "id" : "f1d2e7953ef08774f436bcdc2991c70c9676b956", "msg" : "Setting parameters and flags to be consistent with the CLUBB repo prior to the October 8 commit merging some E3SM code (https://github.com/larson-group/clubb/commit/cf5b2e4b80d8bd3ca411b9b5e6d5a2afece04795). This should help to basically recover the plots from before the merge, which is useful for single-column model testing.", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" }, { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "model_flags.F90" ], "commitId" : "3992f76b8f461365f321eddd00d1951c7540475a", "timestamp" : 1608325274000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Update model_flags.F90\u000a\u000aSetting l_use_shear_Richardson to false in model_flags.in to be consistent with the default configurable_model_flags.in file. This will ensure consistency with other nightly tests (eg WRF and SAM) that do not read configureable_model_flags.in.\u000a", "date" : "2020-12-18 15:01:14 -0600", "id" : "3992f76b8f461365f321eddd00d1951c7540475a", "msg" : "Update model_flags.F90", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_clubb_core_module.F90", "model_flags.F90", "clubb_api_module.F90" ], "commitId" : "13cf0163bb65ea786b232a7a4ebea978fe958d44", "timestamp" : 1610388625000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Adding new flag that allows the user to implement the TKE formulation of the wp3 C15 term (known currently as bp2, but ultimately will be called pr3). See issue #884.\u000a", "date" : "2021-01-11 12:10:25 -0600", "id" : "13cf0163bb65ea786b232a7a4ebea978fe958d44", "msg" : "Adding new flag that allows the user to implement the TKE formulation of the wp3 C15 term (known currently as bp2, but ultimately will be called pr3). See issue #884.", "paths" : [ { "editType" : "edit", "file" : "model_flags.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "e17eed6901ff64e2500768c2a44e9d792f04f556", "timestamp" : 1610388625000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Adding new flag that allows the user to implement the TKE formulation of the wp3 C15 term (known currently as bp2, but ultimately will be called pr3). See issue #884.\u000a", "date" : "2021-01-11 12:10:25 -0600", "id" : "e17eed6901ff64e2500768c2a44e9d792f04f556", "msg" : "Adding new flag that allows the user to implement the TKE formulation of the wp3 C15 term (known currently as bp2, but ultimately will be called pr3). See issue #884.", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "parameter_indices.F90", "advance_xm_wpxp_module.F90", "clubb_api_module.F90", "parameters_tunable.F90" ], "commitId" : "217a6182be062dc94ac62d8880a181ec82011b97", "timestamp" : 1610658263000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Separating out the parameter C5 into C_uu_shr and C_uu_buoy, consistent with the formalism of Mironov and Machulskaya 2017. C5 has been effectively renamed C_uu_shr, and a new parameter C_uu_buoy has been introduced. See https://github.com/larson-group/clubb/issues/901.\u000a\u000aThis commit is BIT_CHANGING, both because it will change the names of parameters output to netcdf, and because it changes the results of the more sensitive CLUBB test cases (like ARM_97), since there is an order-of-operations change involved in the subroutine \"wp2_term_pr3_rhs\" in advance_wp2_wp3_module.F90.\u000a", "date" : "2021-01-14 15:04:23 -0600", "id" : "217a6182be062dc94ac62d8880a181ec82011b97", "msg" : "Separating out the parameter C5 into C_uu_shr and C_uu_buoy, consistent with the formalism of Mironov and Machulskaya 2017. C5 has been effectively renamed C_uu_shr, and a new parameter C_uu_buoy has been introduced. See https://github.com/larson-group/clubb/issues/901.", "paths" : [ { "editType" : "edit", "file" : "parameter_indices.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "parameters_tunable.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in" ], "commitId" : "f1213e1022b9012cf4f09f81058c2c386c716a30", "timestamp" : 1610658263000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Separating out the parameter C5 into C_uu_shr and C_uu_buoy, consistent with the formalism of Mironov and Machulskaya 2017. C5 has been effectively renamed C_uu_shr, and a new parameter C_uu_buoy has been introduced. See https://github.com/larson-group/clubb/issues/901.\u000a\u000aThis commit is BIT_CHANGING, both because it will change the names of parameters output to netcdf, and because it changes the results of the more sensitive CLUBB test cases (like ARM_97), since there is an order-of-operations change involved in the subroutine \"wp2_term_pr3_rhs\" in advance_wp2_wp3_module.F90.\u000a", "date" : "2021-01-14 15:04:23 -0600", "id" : "f1213e1022b9012cf4f09f81058c2c386c716a30", "msg" : "Separating out the parameter C5 into C_uu_shr and C_uu_buoy, consistent with the formalism of Mironov and Machulskaya 2017. C5 has been effectively renamed C_uu_shr, and a new parameter C_uu_buoy has been introduced. See https://github.com/larson-group/clubb/issues/901.", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "silhs_api_module.F90", "latin_hypercube_driver_module.F90" ], "commitId" : "7e1baf2139189deaa6c2da15181bb8cdcf55c4b5", "timestamp" : 1610686189000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/bmg2", "fullName" : "bmg2" }, "authorEmail" : "bmg2@uwm.edu", "comment" : "I am now passing vert_decorr_coef into SILHS instead of involving\u000aa USE statement.\u000a", "date" : "2021-01-14 22:49:49 -0600", "id" : "7e1baf2139189deaa6c2da15181bb8cdcf55c4b5", "msg" : "I am now passing vert_decorr_coef into SILHS instead of involving", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" }, { "editType" : "edit", "file" : "silhs_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90" ], "commitId" : "74bc7b14e4dea9c34e9d28071afac13e80a79e82", "timestamp" : 1610740288000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "This commits further updates related to splitting the parameter C5 into C_uu_shr and C_uu_buoy (see this commit: https://github.com/larson-group/clubb/commit/3f75a27dd94673a2b8603c24b989da106e759b39). Changes include correcting one instance where C_uu_shr was passed to a function when C_uu_buoy should've been passed, and also now applying the changes to up2 and vp2, which was overlooked before. I've also updated the comments to remove, where appropriate, references to \"C_5\" that were missed before (in a few places I have left the C_5 in place but included a note indicating that it has now been broken up).\u000a\u000aThis commit is BIT_CHANGING, similar to the previous commit, because of the order-of-operations change in the pr2 term for up2 and vp2. This leaves more stable cases like BOMEX bit-for-bit identical, but changes outcomes for more senstive cases like ARM_97.\u000a\u000aSee issue #901.\u000a", "date" : "2021-01-15 13:51:28 -0600", "id" : "74bc7b14e4dea9c34e9d28071afac13e80a79e82", "msg" : "This commits further updates related to splitting the parameter C5 into C_uu_shr and C_uu_buoy (see this commit: https://github.com/larson-group/clubb/commit/3f75a27dd94673a2b8603c24b989da106e759b39). Changes include correcting one instance where C_uu_shr was passed to a function when C_uu_buoy should've been passed, and also now applying the changes to up2 and vp2, which was overlooked before. I've also updated the comments to remove, where appropriate, references to \"C_5\" that were missed before (in a few places I have left the C_5 in place but included a note indicating that it has now been broken up).", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "4af03a62d94eec9f15856429b959b164e0c73d54", "timestamp" : 1611079334000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Adding a test to make sure new C_uu_buoy parameter is within the valid range. See #901.\u000a", "date" : "2021-01-19 12:02:14 -0600", "id" : "4af03a62d94eec9f15856429b959b164e0c73d54", "msg" : "Adding a test to make sure new C_uu_buoy parameter is within the valid range. See #901.", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "tunable_parameters.in", "configurable_model_flags.in" ], "commitId" : "9fd71af1ee2216a5960e4250b0766cfbeaf6e4b8", "timestamp" : 1611176566000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "This commit renames the wp3 budget term from \"bp2\" to \"pr_turb\", and renames the related parameter \"C15\" to \"C_wp3_turb\". The majority of files changed are supplemental files such as postprocessing files for plotgen and pyplotgen and tuner files and input files.\u000a\u000aThis commit is BIT_CHANGING, but only because it renames a variable and a parameter. Results should be bit-for-bit with previous results.\u000a\u000aSee issue #901.\u000a", "date" : "2021-01-20 15:02:46 -0600", "id" : "9fd71af1ee2216a5960e4250b0766cfbeaf6e4b8", "msg" : "This commit renames the wp3 budget term from \"bp2\" to \"pr_turb\", and renames the related parameter \"C15\" to \"C_wp3_turb\". 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The majority of files changed are supplemental files such as postprocessing files for plotgen and pyplotgen and tuner files and input files.\u000a\u000aThis commit is BIT_CHANGING, but only because it renames a variable and a parameter. Results should be bit-for-bit with previous results.\u000a\u000aSee issue #901.\u000a", "date" : "2021-01-20 15:02:46 -0600", "id" : "405016e402e3fa788758ba73639fdd4c892e95ad", "msg" : "This commit renames the wp3 budget term from \"bp2\" to \"pr_turb\", and renames the related parameter \"C15\" to \"C_wp3_turb\". 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Also updating the value of C_uu_shr from 0.3 to 0.4 after testing priority-cases with the new upwp_pr4 term.\u000a\u000aThis commit is BIT_CHANGING.\u000a\u000aSee #901.\u000a", "date" : "2021-01-27 13:38:10 -0600", "id" : "3e838cd2412d5779ae18f78f1b8b455c7c2e5593", "msg" : "Updating advance_xm_wpxp_module so that the upwp_pr4 term uses the parameter C_uu_shr instead of the hard-coded value 0.7. 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See #902.\u000a", "date" : "2021-02-26 13:23:58 -0600", "id" : "dd289072a05230e2802f7c5e6f752b01340cb81e", "msg" : "Adding Shixuan's godunov_xpyp_ta updates here in case we want to merge them into our master branch. See #902.", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_wp2_wp3_module.F90" ], "commitId" : "8aebfdf2b109ec3d6fdc434375805fc1a4d6760a", "timestamp" : 1614626041000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Turning on wp3 pr_turb term.\u000a\u000aThis commit sets C_wp3_turb=1 and l_use_tke_in_wp3_pr_turb_term=.true. and is BIT_CHANGING.\u000a\u000aAlso in the pr_turb term I have converted the wp2_zt outside the derivative to a wp2 (momentum levels) inside the derivative.\u000a\u000aSee #884.\u000a", "date" : "2021-03-01 13:14:01 -0600", "id" : "8aebfdf2b109ec3d6fdc434375805fc1a4d6760a", "msg" : "Turning on wp3 pr_turb term.", "paths" : [ { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" } ] }, { 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"commitId" : "1a0959d3f3c5b5d8f9fae84fbe5229e5ff3b8634", "timestamp" : 1615074952000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@msoe.edu", "comment" : "Changed the variable up2_vp2_factor to up2_sfc_coef in all files\u000a", "date" : "2021-03-06 17:55:52 -0600", "id" : "1a0959d3f3c5b5d8f9fae84fbe5229e5ff3b8634", "msg" : "Changed the variable up2_vp2_factor to up2_sfc_coef in all files", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "surface_varnce_module.F90" ], "commitId" : "13d8c614dd9a7ab539ab349ebeab61758bb666ae", "timestamp" : 1615324148000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@uwm.edu", "comment" : "I added an option to improve dry, convecting boundary layers.\u000aThe new option is triggered by setting l_vary_convect_depth=.true.\u000aThe option reduces the spurious surface spike in thlp2 in Wangara.\u000a\u000aThe option calculates the Deardorff convective velocity using\u000aa variable estimate of layer depth based on the depth\u000aover which wpthlp is positive near the ground.\u000athlp2_sfc is then diagnosed by assuming maximal correlation\u000abetween thl and vertical velocity, w.\u000a\u000aCurrently, l_vary_convect_depth is set to false,\u000aand hence the answers remain BFB.\u000a\u000aFor #905.\u000a", "date" : "2021-03-09 15:09:08 -0600", "id" : "13d8c614dd9a7ab539ab349ebeab61758bb666ae", "msg" : "I added an option to improve dry, convecting boundary layers.", "paths" : [ { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "surface_varnce_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_xp2_xpyp_module.F90" ], "commitId" : "e5caa86acac2277408322ef32ba0587ed9194fe3", "timestamp" : 1615986503000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/vlarson", "fullName" : "Vince Larson" }, "authorEmail" : "vlarson@users.noreply.github.com", "comment" : "This commit switches the names, but not the values, of the dp1 and pr1 variables for up2 and vp2. 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I believe this commit is BIT_CHANGING since it will affect the values of these variables even though the nightly plot profiles should not change (but the budget plots would have these lines swapped).", "paths" : [ { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_sfc_module.F90", "grid_class.F90", "advance_clubb_core_module.F90", "surface_varnce_module.F90", "sfc_varnce_module.F90", "numerical_check.F90" ], "commitId" : "df7d5489d978444c7ca8a4ae9cd9f6411d9f024f", "timestamp" : 1616100132000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@msoe.edu", "comment" : "Changed surface to sfc in all instances where requested\u000a", "date" : "2021-03-18 15:42:12 -0500", "id" : "df7d5489d978444c7ca8a4ae9cd9f6411d9f024f", "msg" : "Changed surface to sfc in all instances where requested", "paths" : [ { "editType" : "delete", "file" : "surface_varnce_module.F90" }, { "editType" : "edit", "file" : "grid_class.F90" }, { "editType" : "edit", "file" : "stats_sfc_module.F90" }, { "editType" : "edit", "file" : "numerical_check.F90" }, { "editType" : "add", "file" : "sfc_varnce_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_sfc_module.F90" ], "commitId" : "b963c2ef6d96de64d0efc4523c28aae810cd0b94", "timestamp" : 1616102621000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Undid sfc change in stats_sfc_module.F90\u000a", "date" : "2021-03-18 16:23:41 -0500", "id" : "b963c2ef6d96de64d0efc4523c28aae810cd0b94", "msg" : "Undid sfc change in stats_sfc_module.F90", "paths" : [ { "editType" : "edit", "file" : "stats_sfc_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "grid_class.F90" ], "commitId" : "b47281e4a8aa2231716f381b9c11a2b2a6ad9ce2", "timestamp" : 1616102639000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Undid sfc change to grid_class.F90\u000a", "date" : "2021-03-18 16:23:59 -0500", "id" : "b47281e4a8aa2231716f381b9c11a2b2a6ad9ce2", "msg" : "Undid sfc change to grid_class.F90", "paths" : [ { "editType" : "edit", "file" : "grid_class.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "numerical_check.F90" ], "commitId" : "ee6b3685c962fdd07d6c405a74bc22b2fed6cb12", "timestamp" : 1616102659000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Undid sfc change in numerical_check.F90\u000a", "date" : "2021-03-18 16:24:19 -0500", "id" : "ee6b3685c962fdd07d6c405a74bc22b2fed6cb12", "msg" : "Undid sfc change in numerical_check.F90", "paths" : [ { "editType" : "edit", "file" : "numerical_check.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90", "clubb_api_module.F90" ], "commitId" : "5a8b661e439baa46b7deabf6e7625a2a46dad188", "timestamp" : 1616623371000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Pushing grid column loop into setup_pdf_params. 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This is all bit-for-bit. larson-group/cam#129", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "e1ca5e193a0a11a8ca9ddbdad6a1dcb99826dff7", "timestamp" : 1616632485000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Fixed typo bug. larson-group/cam#129\u000a", "date" : "2021-03-24 19:34:45 -0500", "id" : "e1ca5e193a0a11a8ca9ddbdad6a1dcb99826dff7", "msg" : "Fixed typo bug. larson-group/cam#129", "paths" : [ { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "setup_clubb_pdf_params.F90" ], "commitId" : "83811d1b6b9ea21bf7de99ca5a089c8f577ea1f0", "timestamp" : 1616795595000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/huebler", "fullName" : "Gunther Huebler" }, "authorEmail" : "huebler@uwm.edu", "comment" : "Pushed down some more loops in setup_pdf_params. 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They are also added to the standard stats file and will be output to netcdf, hence this commit is BIT_CHANGING.", "paths" : [ { "editType" : "edit", "file" : "tunable_parameters.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_type_utilities.F90", "interpolation.F90", "advance_clubb_core_module.F90", "advance_windm_edsclrm_module.F90", "calc_pressure.F90", "advance_helper_module.F90" ], "commitId" : "3c6fc8de1942c935d48433c37c2250ba655681e5", "timestamp" : 1620766665000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@uwm.edu", "comment" : "Added intent comments for the following files:\u000aadvance_clubb_core_module, advance_helper_module, and advance_windm_edsclrm_module.\u000aThese changes are BFB.\u000aFor ticket #924.\u000a", "date" : "2021-05-11 15:57:45 -0500", "id" : "3c6fc8de1942c935d48433c37c2250ba655681e5", "msg" : "Added intent comments for the following files:", "paths" : [ { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "interpolation.F90" }, { "editType" : "edit", "file" : "advance_windm_edsclrm_module.F90" }, { "editType" : "edit", "file" : "stats_type_utilities.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "calc_pressure.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "configurable_model_flags.in" ], "commitId" : "b4a6c7c955a95b25df433292cafcce079b8b3714", "timestamp" : 1620854783000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Setting l_update_pressure = .false. since it was causing a problem with the MC3E test and is turned off in all host models anyway.\u000a\u000aThis is BIT_CHANGING.\u000a\u000aSee https://github.com/larson-group/e3sm/issues/6.\u000a", "date" : "2021-05-12 16:26:23 -0500", "id" : "b4a6c7c955a95b25df433292cafcce079b8b3714", "msg" : "Setting l_update_pressure = .false. since it was causing a problem with the MC3E test and is turned off in all host models anyway.", "paths" : [ { "editType" : "edit", "file" : "configurable_model_flags.in" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "advance_clubb_core_module.F90", "pdf_closure_module.F90" ], "commitId" : "0799b154b8dd0feb9ebe8189be0f004b142d08a3", "timestamp" : 1620868004000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Removing \"if\" statement around calculation of wp4 in pdf_closure_module.F90 and the same \"if\" statement around some further manipulation of wp4 in advance_clubb_core. 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For #886.", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90", "advance_xm_wpxp_module.F90", "pos_definite_module.F90", "grid_class.F90", "setup_clubb_pdf_params.F90", "mono_flux_limiter.F90", "advance_helper_module.F90", "mixing_length.F90", "advance_wp2_wp3_module.F90", "advance_xp2_xpyp_module.F90", "advance_clubb_core_module.F90", "advance_xp3_module.F90", "calc_pressure.F90" ], "commitId" : "7bda97ac8ad514e02e6e6ad3e2562d52d5c07142", "timestamp" : 1623708447000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@msoe.edu", "comment" : "Removing gr as a module variable from grid_class.\u000agr is now a module variable in clubb_api_module.\u000aThis was done in order to not break host models.\u000aAdditonally, gr is now being fed through the\u000aarg list of all functions and subroutines that use\u000agr within grid_class.\u000aResults are BFB identical.\u000aFor ticket #886.\u000a", "date" : "2021-06-14 17:07:27 -0500", "id" : "7bda97ac8ad514e02e6e6ad3e2562d52d5c07142", "msg" : "Removing gr as a module variable from grid_class.", "paths" : [ { "editType" : "edit", "file" : "mixing_length.F90" }, { "editType" : "edit", "file" : "pos_definite_module.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" }, { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "advance_xm_wpxp_module.F90" }, { "editType" : "edit", "file" : "advance_xp2_xpyp_module.F90" }, { "editType" : "edit", "file" : "grid_class.F90" }, { "editType" : "edit", "file" : "mono_flux_limiter.F90" }, { "editType" : "edit", "file" : "advance_wp2_wp3_module.F90" }, { "editType" : "edit", "file" : "advance_xp3_module.F90" }, { "editType" : "edit", "file" : "advance_helper_module.F90" }, { "editType" : "edit", "file" : "calc_pressure.F90" }, { "editType" : "edit", "file" : "setup_clubb_pdf_params.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "latin_hypercube_driver_module.F90" ], "commitId" : "fc2e13eb263eb0cf9ac8e12f0a6965e6a01478ec", "timestamp" : 1623708447000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@msoe.edu", "comment" : "Removing gr as a module variable from grid_class.\u000agr is now a module variable in clubb_api_module.\u000aThis was done in order to not break host models.\u000aAdditonally, gr is now being fed through the\u000aarg list of all functions and subroutines that use\u000agr within grid_class.\u000aResults are BFB identical.\u000aFor ticket #886.\u000a", "date" : "2021-06-14 17:07:27 -0500", "id" : "fc2e13eb263eb0cf9ac8e12f0a6965e6a01478ec", "msg" : "Removing gr as a module variable from grid_class.", "paths" : [ { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_zm_module.F90" ], "commitId" : "8601df2406dafdfdf0d57a77067b9553dc19d6e9", "timestamp" : 1623854429000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens", "fullName" : "benjamin.andrew.stephens" }, "authorEmail" : "benjamin.andrew.stephens@gmail.com", "comment" : "Fixing typo in stats_zm_module.F90. Background: Since this commit https://github.com/larson-group/clubb/commit/466c5383fa5c0cc85316c6d117826974a5e2e0a3# in August 2020 the upwp budget lines in Pyplotgen have not appeared to be balanced for any cases. It turns out the reason is that a comma and space were added to the upwp_tp variable name in stats_zm_module.F90 in the August 2020 commit. This unusual naming causes pyplotgen not to recognize this variable, so it doesn't get plotted and the lines appear unbalanced. However, since the budget balance test still found the variable, it kept passing successfully. This commit will fix the issue with the pyplotgen plotting by reverting the name to the standard format.\u000a\u000aThis is BIT_CHANGING since it will affect the name of the upwp_tp variable in the X_zm.nc netcdf file, but it will not change results.\u000a", "date" : "2021-06-16 09:40:29 -0500", "id" : "8601df2406dafdfdf0d57a77067b9553dc19d6e9", "msg" : "Fixing typo in stats_zm_module.F90. 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This commit will fix the issue with the pyplotgen plotting by reverting the name to the standard format.", "paths" : [ { "editType" : "edit", "file" : "stats_zm_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "stats_sfc_module.F90" ], "commitId" : "1978bbce511f3b7a9631d61a8c1028bf2072bfbf", "timestamp" : 1623855537000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/noreply", "fullName" : "noreply" }, "authorEmail" : "noreply@github.com", "comment" : "Fixing a typo from an earlier commit.\u000a\u000aSee comments in this other commit where a similar typo was fixed: https://github.com/larson-group/clubb/commit/a4f5f736cb16168f40fdc01e454930ffa05fbb4d.\u000a", "date" : "2021-06-16 09:58:57 -0500", "id" : "1978bbce511f3b7a9631d61a8c1028bf2072bfbf", "msg" : "Fixing a typo from an earlier commit.", "paths" : [ { "editType" : "edit", "file" : "stats_sfc_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "09858d30f6551ef8ad290e02deecf27b321befd8", "timestamp" : 1624289253000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@msoe.edu", "comment" : "Feeding gr through arg list for functions outside of CLUBB_core.\u000aGr has been removed as a moduler variable from clubb_api_module\u000aand has been moved to clubb_driver as the top level moduler variable.\u000aThere is only one instance where a use clubb_driver gr statement is used\u000aand that is within clubb_tuner.\u000aResults are BFB identical.\u000aFor ticket #886.\u000a", "date" : "2021-06-21 10:27:33 -0500", "id" : "09858d30f6551ef8ad290e02deecf27b321befd8", "msg" : "Feeding gr through arg list for functions outside of CLUBB_core.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "silhs_api_module.F90", "latin_hypercube_driver_module.F90" ], "commitId" : "24bc6821388ce95985f023733ada790ec1843778", "timestamp" : 1624289253000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@msoe.edu", "comment" : "Feeding gr through arg list for functions outside of CLUBB_core.\u000aGr has been removed as a moduler variable from clubb_api_module\u000aand has been moved to clubb_driver as the top level moduler variable.\u000aThere is only one instance where a use clubb_driver gr statement is used\u000aand that is within clubb_tuner.\u000aResults are BFB identical.\u000aFor ticket #886.\u000a", "date" : "2021-06-21 10:27:33 -0500", "id" : "24bc6821388ce95985f023733ada790ec1843778", "msg" : "Feeding gr through arg list for functions outside of CLUBB_core.", "paths" : [ { "editType" : "edit", "file" : "silhs_api_module.F90" }, { "editType" : "edit", "file" : "latin_hypercube_driver_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "grid_class.F90", "advance_clubb_core_module.F90", "clubb_api_module.F90" ], "commitId" : "7c6ca69bbc46a81d7689d02bc7e50835713e1d31", "timestamp" : 1624564146000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@msoe.edu", "comment" : "Moving 'gr' from front of arg list when being used as intent(inout) to conform to standard. #886. BFB.\u000a", "date" : "2021-06-24 14:49:06 -0500", "id" : "7c6ca69bbc46a81d7689d02bc7e50835713e1d31", "msg" : "Moving 'gr' from front of arg list when being used as intent(inout) to conform to standard. #886. BFB.", "paths" : [ { "editType" : "edit", "file" : "clubb_api_module.F90" }, { "editType" : "edit", "file" : "grid_class.F90" }, { "editType" : "edit", "file" : "advance_clubb_core_module.F90" } ] }, { "_class" : "hudson.plugins.git.GitChangeSet", "affectedPaths" : [ "clubb_api_module.F90" ], "commitId" : "5127df88dd9725018f5dbf4097192088202d7da9", "timestamp" : 1624641544000, "author" : { "absoluteUrl" : "http://carson.math.uwm.edu/jenkins/user/rhodesk", "fullName" : "rhodesk" }, "authorEmail" : "rhodesk@msoe.edu", "comment" : "The purpose of this commit is to see whether or not causing changes in sam's version of clubb will cause errors when the master branch of clubb gets merged intosam. 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