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_class='hudson.plugins.git.GitChangeSet'><affectedPath>model_flags.F90</affectedPath><affectedPath>remapping.F90</affectedPath><affectedPath>constants_clubb.F90</affectedPath><affectedPath>output_netcdf.F90</affectedPath><affectedPath>stats_variables.F90</affectedPath><affectedPath>stats_clubb_utilities.F90</affectedPath><affectedPath>stats_zm_module.F90</affectedPath><affectedPath>interpolation.F90</affectedPath><affectedPath>grid_adaptation.F90</affectedPath><commitId>b558b034dae7a6c45872fe3f91ac6e163472eaaa</commitId><timestamp>1747866722000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Merge grid adaptation implementation (#1249)

* add tunable parameter interp_from_dycore_grid_method

* add dycore interpolation to atex case with conservative remapping by ullrich

* remove new gpu commands

* add acc annotation for gpu

* remove acc annotation again

* add acc annotation for parallel loop

* add acc annotations for parallel loop execution

* change remapping subroutine to take number of levels and levels as input instead of whole grid object

* add more general functions to interpolate

* add and refactor functions for remapping values given on zm levels

* fix compiler errors and refactoring to stay under 100 chars per line

* remove TODOs and used new interpolating function in interpolate_forcings

* add functions for adaptive grid generation and grid density function normalization

* add conservative ullrich remapping to cases with forcing time dependent inputs

* add grid adaptation and flag

* clean up and add warning for case when remapping from dycore flag cannot be used

* some refactoring

* add logical flag for dycore and renamed flags for dycore and grid adaptation

* remove ifdefs

* refactoring

* add units

* changed Lscale to inverse

* add write to file for grid adaptation (still WIP)

* clean up

* change parameter for grid adaptation and add file and plot script for grid adaptation

* add script for animation

* add e3sm dycore grid

* refactoring for efficiency

* small fix for grid adapt plot script

* add new grid adaptation method with prescribed minimum density profile

* fix call to setup_grid

* add gabls2 case

* add refinement criterion and adaptation trigger

* small fix and add minimum grid density profile to animation

* add grid density to pyplots

* add general refinement criteria for astex and gabls2 case (and arm)

* update create_evenly_grid script

* unfinished save

* WIP: save progress

* save working configuration

* save working config without Lscale

* save working config wo the use of Lscale

* change call to map1_ppm to use correct iv parameter and order 4

* save code for results in thesis

* add code for results

* refactor remapping module for grid adaptation

* add list of functions/subroutines to remapping module

* adjust use statements

* add model files for arm, astex and gabls2

* refactor grid_adaptation module

* refactor and adjust tim stopping in clubb_driver

* clean up

* clean up

* add grids

* add scripts

* add changes made to pyplotgen to generate plots for paper

* add configurable model flags file that was used to obtain results

* clean up and save tunable parameters file

* fix error

* fix error

* add grid adapt output for debug level 2

* change dycore grid

* add plot generation script for paper plots

* add small changes

* add normalization explaination plot to paper plots script

* fix plot

* clean up for stats output

* add comment

* fix use of clubb_at_least_debug_api

* small deallocation fix

* fix merge problems

* revert changes made to test grid adaptation

* revert tunable_parameters for Lscale

* revert changes made to create plots for grid adaptation

* add new line

* add new line

* revert changes

* revert changes made to generate grid adaptation plots
</comment><date>2025-05-21 17:32:02 -0500</date><id>b558b034dae7a6c45872fe3f91ac6e163472eaaa</id><msg>Merge grid adaptation implementation 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simple wrappers from clubb_api_module (#1245)

* Removed simple wrappers from clubb_api_module
CLUBB ticket #1223

Removed wrappers and renamed procedures in original modules:
- cleanup_clubb_core_api
- compute_current_date_api
- set_clubb_debug_level_api
- clubb_at_least_debug_level_api
- lin_interpolate_on_grid_api
- pack_pdf_params_api
- unpack_pdf_params_api
- init_precip_fracs_api
- init_pdf_implicit_coefs_terms_api
- stats_end_timestep_api
- print_clubb_config_flags_api
- initialize_tau_sponge_damp_api
- finalize_tau_sponge_damp_api
</comment><date>2025-05-13 12:55:59 -0500</date><id>49db55baddc842d93e891cf0e71e83357b25fa74</id><msg>Removed simple wrappers from clubb_api_module (#1245)</msg><path><editType>edit</editType><file>advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>sfc_varnce_module.F90</file></path><path><editType>edit</editType><file>setup_clubb_pdf_params.F90</file></path><path><editType>edit</editType><file>model_flags.F90</file></path><path><editType>edit</editType><file>numerical_check.F90</file></path><path><editType>edit</editType><file>output_grads.F90</file></path><path><editType>edit</editType><file>lapack_wrap.F90</file></path><path><editType>edit</editType><file>advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>stats_type_utilities.F90</file></path><path><editType>edit</editType><file>calendar.F90</file></path><path><editType>edit</editType><file>corr_varnce_module.F90</file></path><path><editType>edit</editType><file>pos_definite_module.F90</file></path><path><editType>edit</editType><file>advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>grid_adaptation.F90</file></path><path><editType>edit</editType><file>precipitation_fraction.F90</file></path><path><editType>edit</editType><file>stats_clubb_utilities.F90</file></path><path><editType>edit</editType><file>matrix_operations.F90</file></path><path><editType>edit</editType><file>diagnose_correlations_module.F90</file></path><path><editType>edit</editType><file>pdf_parameter_module.F90</file></path><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>error_code.F90</file></path><path><editType>edit</editType><file>mono_flux_limiter.F90</file></path><path><editType>edit</editType><file>fill_holes.F90</file></path><path><editType>edit</editType><file>grid_class.F90</file></path><path><editType>edit</editType><file>mixing_length.F90</file></path><path><editType>edit</editType><file>hydromet_pdf_parameter_module.F90</file></path><path><editType>edit</editType><file>matrix_solver_wrapper.F90</file></path><path><editType>edit</editType><file>output_netcdf.F90</file></path><path><editType>edit</editType><file>sponge_layer_damping.F90</file></path><path><editType>edit</editType><file>pdf_closure_module.F90</file></path><path><editType>edit</editType><file>clip_explicit.F90</file></path><path><editType>edit</editType><file>interpolation.F90</file></path><path><editType>edit</editType><file>clubb_api_module.F90</file></path><path><editType>edit</editType><file>advance_xp2_xpyp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>latin_hypercube_driver_module.F90</affectedPath><affectedPath>silhs_importance_sample_module.F90</affectedPath><commitId>c7ab3b99994f99221fae7026adb974f302dc1393</commitId><timestamp>1747158959000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Removed simple wrappers from clubb_api_module (#1245)

* Removed simple wrappers from clubb_api_module
CLUBB ticket #1223

Removed wrappers and renamed procedures in original modules:
- cleanup_clubb_core_api
- compute_current_date_api
- set_clubb_debug_level_api
- clubb_at_least_debug_level_api
- lin_interpolate_on_grid_api
- pack_pdf_params_api
- unpack_pdf_params_api
- init_precip_fracs_api
- init_pdf_implicit_coefs_terms_api
- stats_end_timestep_api
- print_clubb_config_flags_api
- initialize_tau_sponge_damp_api
- finalize_tau_sponge_damp_api
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