Started by an SCM change Obtained jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile from git https://github.com/larson-group/e3sm.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/e3sm_run_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/e3sm_run_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 4b605b6f26b3fe1d8b1d58973f6afa40626b9330 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 4b605b6f26b3fe1d8b1d58973f6afa40626b9330 # timeout=10 Commit message: "Simplifying jenkinsfile command. larson-group/e3sm#38" > git rev-list --no-walk 6afd7d49f68c3f1d26bc2f5f3146ca649c7b03ec # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + git submodule init Submodule 'components/cam/src/physics/rrtmgp/external' (https://github.com/RobertPincus/rte-rrtmgp.git) registered for path 'components/cam/src/physics/rrtmgp/external' Submodule 'components/clm/src/external_models/fates' (https://github.com/NGEET/fates.git) registered for path 'components/clm/src/external_models/fates' Submodule 'alm-mpp' (https://github.com/MPP-LSM/MPP.git) registered for path 'components/clm/src/external_models/mpp' Submodule 'sbetr' (https://github.com/BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/clm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into 'components/cam/src/physics/rrtmgp/external'... Submodule path 'components/cam/src/physics/rrtmgp/external': checked out '0b1cffdd51a35045c28aae314e2b29e2a663b5e6' Cloning into 'components/clm/src/external_models/fates'... Submodule path 'components/clm/src/external_models/fates': checked out '1ad93c311ed1a5d45df656b9031c8714a7071e64' Cloning into 'components/clm/src/external_models/mpp'... Submodule path 'components/clm/src/external_models/mpp': checked out '82ef0c1a37ffd469e9a6ce84dbf487c6ef8762b2' Cloning into 'components/clm/src/external_models/sbetr'... Submodule path 'components/clm/src/external_models/sbetr': checked out 'd71fb2df928099bacc4e9a3a9f4b8a1f2a6e37a1' Cloning into 'components/mpas-source'... Submodule path 'components/mpas-source': checked out 'bb1ea15299544e2b25144c06c621ff40fa482760' Cloning into 'externals/scorpio_classic'... Submodule path 'externals/scorpio_classic': checked out '1e538b56fa7cfa209c119e866a95669875eb200d' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Modify Run Scripts) [Pipeline] sh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_BOMEX.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh + sed -i s/carson/nelson/g nightly_test/nightly_e3sm_scm_RICO.csh [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run BOMEX) [Pipeline] sh + source /opt/intel/bin/ifortvars.sh intel64 ++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux ++ INTEL_TARGET_ARCH= ++ INTEL_TARGET_PLATFORM=linux +++ uname ++ INTEL_HOST_PLATFORM=Linux ++ COMPILERVARS_ARGV=1 ++ '[' 1 -eq 0 ']' ++ '[' 1 -gt 0 ']' ++ opt=intel64 ++ case $opt in ++ INTEL_TARGET_ARCH=intel64 ++ shift ++ '[' 0 -gt 0 ']' ++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']' ++ '[' linux = mac ']' ++ '[' 1 -eq 0 ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64 +++ INST=/opt/intel +++ DIR_DEBUGGER=/opt/intel/debugger_2019 +++ DIR_DOCUMENTATION=/opt/intel/documentation_2019 +++ '[' '!' -d /opt/intel ']' +++ case "$(uname -sm)" in ++++ uname -sm +++ DEBUGGERARCH=intel64 +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ case ${PATH} in +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n en_US.UTF-8 ']' +++ LANGUAGE_TERRITORY=en_US.UTF-8 +++ case ${LANGUAGE_TERRITORY} in +++ LANGUAGE_TERRITORY=en +++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']' +++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']' +++ '[' -n '' ']' +++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n '' ']' +++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/ +++ '[' -n '' ']' +++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']' +++ '[' -n '' ']' +++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']' +++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' +++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ++++ uname -s +++ '[' Linux '!=' Darwin ']' +++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']' +++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64 +++ set_mkl_env intel64 +++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ __mkl_tmp_SCRIPT_NAME=mklvars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_TARGET_ARCH= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_tmp_BAD_SWITCH= +++ '[' -z intel64 ']' +++ '[' -n intel64 ']' +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __mkl_tmp_TARGET_ARCH=intel64 +++ shift +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -z intel64 ']' +++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib +++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib +++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib +++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ __subdir_arch_ia32=ia32_lin +++ __subdir_arch_intel64=intel64_lin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __target_arch_path=intel64_lin +++ __tbb_path_arch= +++ '[' -z '' ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']' +++ '[' intel64_lin = ia32_lin ']' ++++ set_tbb_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin +++++ get_tbb_library_directory +++++ __tbb_tmp_lib_dir=gcc4.1 +++++ which gcc +++++ '[' 0 -eq 0 ']' ++++++ gcc --version ++++++ grep gcc ++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*' ++++++ sed -e 's/^\ //' +++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)' +++++ '[' 0 -eq 0 ']' ++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)' ++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+' +++++ __tbb_tmp_gcc_version=8.3.1 +++++ case "${__tbb_tmp_gcc_version}" in +++++ __tbb_tmp_lib_dir=gcc4.7 +++++ echo gcc4.7 ++++ __tmp_tbb_subdir=/gcc4.7 ++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 +++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ '[' intel64_lin = ia32_lin ']' ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_nls_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ '[' '' = verbose ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']' ++ '[' intel64 = intel64 -o '' = intel64 ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh +++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi +++ export I_MPI_ROOT +++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ '[' -z '' ']' +++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' +++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ '[' 0 -gt 0 ']' +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']' +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov +++ export FI_PROVIDER_PATH ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux +++ INTEL_INSTALL_DIR_ORIG= +++ INTEL_NDK_DIR_ORIG= +++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ NDK_DIR='' +++ NDK_ARCH= ++++ uname +++ INTEL_HOST_PLATFORM=Linux +++ '[' 2 -eq 0 ']' +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ NDK_ARCH=x86_64 +++ '[' -n '' ']' +++ export PATH +++ '[' linux = android ']' +++ unset ICCCFG +++ unset ICPCCFG +++ unset ICXCFG +++ unset ICPXCFG +++ unset XIARCFG +++ unset XILDCFG +++ unset INTEL_USE_ENVIRONMENT +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-9/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-12/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-13/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-14/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-15/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-16/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-17/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-18/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-19/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-21/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-22/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-23/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-24/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-26/arch-x86_64' ']' +++ '[' -d '/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']' +++ '[' Linux = Darwin ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']' +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']' +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' intel64 = ia32 ']' +++ '[' -z '' ']' +++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ++++ pwd +++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ '[' -n ']' +++ INSTALL_DIR= +++ '[' -n ']' +++ NDK_DIR= +++ unset INTEL_INSTALL_DIR_ORIG +++ unset INTEL_NDK_DIR_ORIG + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_gfortran_test; csh nightly_test/nightly_e3sm_scm_BOMEX.csh' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: 4b605b6 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-07-15 03:05:00 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:05:00 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:05:00 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:05:01 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:05:01 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:05:01 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:05:01 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:05:01 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:05:01 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:05:01 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-07-15 03:05:03 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:05:03 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:05:03 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:05:03 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:05:03 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:05:03 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:05:03 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:05:03 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:05:04 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:05:04 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/gptl.bldlog.210715-030503 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/mct.bldlog.210715-030503 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/pio.bldlog.210715-030503 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/csm_share.bldlog.210715-030503 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/atm.bldlog.210715-030503 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/lnd.bldlog.210715-030503 - Building ice Library - Building ocn Library Building ice with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/ice.bldlog.210715-030503 Building ocn with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/ocn.bldlog.210715-030503 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/rof.bldlog.210715-030503 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/glc.bldlog.210715-030503 - Building wav Library Building wav with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/wav.bldlog.210715-030503 - Building iac Library Building iac with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/iac.bldlog.210715-030503 - Building esp Library Building esp with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/esp.bldlog.210715-030503 sesp built in 0.470970 seconds sglc built in 0.499456 seconds srof built in 0.533356 seconds siac built in 0.520925 seconds swav built in 0.528145 seconds docn built in 1.260855 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 22.898042 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 108.826042 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 115.829121 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.210715-030503 Component e3sm exe build complete with 3 warnings Time spent not building: 1.081676 sec Time spent building: 170.272623 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-07-15 03:07:54 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:07:55 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:07:55 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:07:55 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:07:55 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:07:55 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:07:55 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:07:55 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:07:55 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:07:55 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-07-15 03:07:55 CASE.RUN BEGINS HERE 2021-07-15 03:07:55 RUN_MODEL BEGINS HERE 2021-07-15 03:07:55 PRE_RUN_CHECK BEGINS HERE 2021-07-15 03:07:55 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/case_scripts Creating component namelists 2021-07-15 03:07:55 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:07:56 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:07:56 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:07:56 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:07:56 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:07:56 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:07:56 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:07:56 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:07:56 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:07:56 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-07-15 03:07:56 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-07-15 03:07:56 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_BOMEX/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-07-15 03:07:56 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-07-15 03:07:56 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-07-15 03:07:56 MODEL EXECUTION BEGINS HERE 2021-07-15 03:08:49 MODEL EXECUTION HAS FINISHED 2021-07-15 03:08:49 POST_RUN_CHECK BEGINS HERE 2021-07-15 03:08:49 POST_RUN_CHECK HAS FINISHED 2021-07-15 03:08:49 RUN_MODEL HAS FINISHED 2021-07-15 03:08:49 GET_TIMING BEGINS HERE 2021-07-15 03:08:49 GET_TIMING HAS FINISHED 2021-07-15 03:08:49 SAVE_POSTRUN_PROVENANCE BEGINS HERE 2021-07-15 03:08:49 SAVE_POSTRUN_PROVENANCE HAS FINISHED check for resubmit dout_s False mach nelson resubmit_num 0 2021-07-15 03:08:49 CASE.RUN HAS FINISHED Submitted job case.run with id None BOMEX was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run DYCOMSrf01) [Pipeline] sh + source /opt/intel/bin/ifortvars.sh intel64 ++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux ++ INTEL_TARGET_ARCH= ++ INTEL_TARGET_PLATFORM=linux +++ uname ++ INTEL_HOST_PLATFORM=Linux ++ COMPILERVARS_ARGV=1 ++ '[' 1 -eq 0 ']' ++ '[' 1 -gt 0 ']' ++ opt=intel64 ++ case $opt in ++ INTEL_TARGET_ARCH=intel64 ++ shift ++ '[' 0 -gt 0 ']' ++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']' ++ '[' linux = mac ']' ++ '[' 1 -eq 0 ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64 +++ INST=/opt/intel +++ DIR_DEBUGGER=/opt/intel/debugger_2019 +++ DIR_DOCUMENTATION=/opt/intel/documentation_2019 +++ '[' '!' -d /opt/intel ']' +++ case "$(uname -sm)" in ++++ uname -sm +++ DEBUGGERARCH=intel64 +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ case ${PATH} in +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n en_US.UTF-8 ']' +++ LANGUAGE_TERRITORY=en_US.UTF-8 +++ case ${LANGUAGE_TERRITORY} in +++ LANGUAGE_TERRITORY=en +++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']' +++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']' +++ '[' -n '' ']' +++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n '' ']' +++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/ +++ '[' -n '' ']' +++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']' +++ '[' -n '' ']' +++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']' +++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' +++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ++++ uname -s +++ '[' Linux '!=' Darwin ']' +++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']' +++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64 +++ set_mkl_env intel64 +++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ __mkl_tmp_SCRIPT_NAME=mklvars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_TARGET_ARCH= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_tmp_BAD_SWITCH= +++ '[' -z intel64 ']' +++ '[' -n intel64 ']' +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __mkl_tmp_TARGET_ARCH=intel64 +++ shift +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -z intel64 ']' +++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib +++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib +++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib +++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ __subdir_arch_ia32=ia32_lin +++ __subdir_arch_intel64=intel64_lin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __target_arch_path=intel64_lin +++ __tbb_path_arch= +++ '[' -z '' ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']' +++ '[' intel64_lin = ia32_lin ']' ++++ set_tbb_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin +++++ get_tbb_library_directory +++++ __tbb_tmp_lib_dir=gcc4.1 +++++ which gcc +++++ '[' 0 -eq 0 ']' ++++++ gcc --version ++++++ grep gcc ++++++ sed -e 's/^\ //' ++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*' +++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)' +++++ '[' 0 -eq 0 ']' ++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)' ++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+' +++++ __tbb_tmp_gcc_version=8.3.1 +++++ case "${__tbb_tmp_gcc_version}" in +++++ __tbb_tmp_lib_dir=gcc4.7 +++++ echo gcc4.7 ++++ __tmp_tbb_subdir=/gcc4.7 ++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 +++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ '[' intel64_lin = ia32_lin ']' ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_nls_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ '[' '' = verbose ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']' ++ '[' intel64 = intel64 -o '' = intel64 ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh +++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi +++ export I_MPI_ROOT +++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ '[' -z '' ']' +++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' +++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ '[' 0 -gt 0 ']' +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']' +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov +++ export FI_PROVIDER_PATH ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux +++ INTEL_INSTALL_DIR_ORIG= +++ INTEL_NDK_DIR_ORIG= +++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ NDK_DIR='' +++ NDK_ARCH= ++++ uname +++ INTEL_HOST_PLATFORM=Linux +++ '[' 2 -eq 0 ']' +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ NDK_ARCH=x86_64 +++ '[' -n '' ']' +++ export PATH +++ '[' linux = android ']' +++ unset ICCCFG +++ unset ICPCCFG +++ unset ICXCFG +++ unset ICPXCFG +++ unset XIARCFG +++ unset XILDCFG +++ unset INTEL_USE_ENVIRONMENT +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-9/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-12/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-13/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-14/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-15/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-16/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-17/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-18/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-19/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-21/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-22/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-23/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-24/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-26/arch-x86_64' ']' +++ '[' -d '/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']' +++ '[' Linux = Darwin ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']' +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']' +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' intel64 = ia32 ']' +++ '[' -z '' ']' +++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ++++ pwd +++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ '[' -n ']' +++ INSTALL_DIR= +++ '[' -n ']' +++ NDK_DIR= +++ unset INTEL_INSTALL_DIR_ORIG +++ unset INTEL_NDK_DIR_ORIG + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_gfortran_test; csh nightly_test/nightly_e3sm_scm_DYCOMSrf01.csh' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: 4b605b6 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-07-15 03:08:59 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:08:59 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:08:59 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:09:00 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:09:00 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:09:00 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:09:00 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:09:00 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:09:00 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:09:00 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-07-15 03:09:02 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:09:02 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:09:02 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:09:02 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:09:03 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:09:03 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:09:03 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:09:03 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:09:03 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:09:03 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/gptl.bldlog.210715-030902 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/mct.bldlog.210715-030902 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/pio.bldlog.210715-030902 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/csm_share.bldlog.210715-030902 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/atm.bldlog.210715-030902 - Building lnd Library Building lnd with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/lnd.bldlog.210715-030902 - Building ice Library - Building ocn Library Building ice with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ice.bldlog.210715-030902 Building ocn with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/ocn.bldlog.210715-030902 - Building rof Library - Building glc Library Building rof with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/rof.bldlog.210715-030902 Building glc with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/glc.bldlog.210715-030902 - Building wav Library Building wav with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/wav.bldlog.210715-030902 - Building iac Library - Building esp Library Building iac with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/iac.bldlog.210715-030902 Building esp with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/esp.bldlog.210715-030902 siac built in 0.563837 seconds sglc built in 0.575341 seconds srof built in 0.583803 seconds swav built in 0.595025 seconds sesp built in 0.592512 seconds docn built in 1.381253 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 23.610702 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 138.379865 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 152.559304 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.210715-030902 Component e3sm exe build complete with 3 warnings Time spent not building: 1.057943 sec Time spent building: 206.977490 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-07-15 03:12:30 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:12:30 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:12:30 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:12:31 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:12:31 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:12:31 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:12:31 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:12:31 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:12:31 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:12:31 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-07-15 03:12:31 CASE.RUN BEGINS HERE 2021-07-15 03:12:31 RUN_MODEL BEGINS HERE 2021-07-15 03:12:31 PRE_RUN_CHECK BEGINS HERE 2021-07-15 03:12:31 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/case_scripts Creating component namelists 2021-07-15 03:12:31 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:12:31 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:12:31 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:12:32 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:12:32 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:12:32 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:12:32 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:12:32 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:12:32 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:12:32 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-07-15 03:12:32 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-07-15 03:12:32 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-07-15 03:12:32 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-07-15 03:12:32 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-07-15 03:12:32 MODEL EXECUTION BEGINS HERE 2021-07-15 03:13:23 MODEL EXECUTION HAS FINISHED 2021-07-15 03:13:23 POST_RUN_CHECK BEGINS HERE 2021-07-15 03:13:23 POST_RUN_CHECK HAS FINISHED 2021-07-15 03:13:23 RUN_MODEL HAS FINISHED 2021-07-15 03:13:23 GET_TIMING BEGINS HERE 2021-07-15 03:13:23 GET_TIMING HAS FINISHED 2021-07-15 03:13:23 SAVE_POSTRUN_PROVENANCE BEGINS HERE 2021-07-15 03:13:23 SAVE_POSTRUN_PROVENANCE HAS FINISHED check for resubmit dout_s False mach nelson resubmit_num 0 2021-07-15 03:13:23 CASE.RUN HAS FINISHED Submitted job case.run with id None DYCOMSrf01 was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run RICO) [Pipeline] sh + source /opt/intel/bin/ifortvars.sh intel64 ++ PROD_DIR=/opt/intel/compilers_and_libraries_2019/linux ++ INTEL_TARGET_ARCH= ++ INTEL_TARGET_PLATFORM=linux +++ uname ++ INTEL_HOST_PLATFORM=Linux ++ COMPILERVARS_ARGV=1 ++ '[' 1 -eq 0 ']' ++ '[' 1 -gt 0 ']' ++ opt=intel64 ++ case $opt in ++ INTEL_TARGET_ARCH=intel64 ++ shift ++ '[' 0 -gt 0 ']' ++ '[' intel64 '!=' ia32 -a intel64 '!=' intel64 -o linux '!=' android -a linux '!=' linux -a linux '!=' mac -o Linux = Darwin -a intel64 '!=' intel64 ']' ++ '[' linux = mac ']' ++ '[' 1 -eq 0 ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/daal/bin/daalvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/../../debugger_2019/bin/debuggervars.sh intel64 +++ INST=/opt/intel +++ DIR_DEBUGGER=/opt/intel/debugger_2019 +++ DIR_DOCUMENTATION=/opt/intel/documentation_2019 +++ '[' '!' -d /opt/intel ']' +++ case "$(uname -sm)" in ++++ uname -sm +++ DEBUGGERARCH=intel64 +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ case ${PATH} in +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -n en_US.UTF-8 ']' +++ LANGUAGE_TERRITORY=en_US.UTF-8 +++ case ${LANGUAGE_TERRITORY} in +++ LANGUAGE_TERRITORY=en +++ '[' '!' -d /opt/intel/documentation_2019/en/debugger ']' +++ '[' -d /opt/intel/documentation_2019/en/debugger/gdb-ia ']' +++ '[' -n '' ']' +++ GDBINFO=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n '' ']' +++ GDBMAN=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/ +++ '[' -n '' ']' +++ export NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/info/ ']' +++ '[' -n '' ']' +++ export INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ INFOPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/info/ +++ '[' -n /opt/intel/documentation_2019/en/debugger/gdb-ia/man/ ']' +++ '[' -n '$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' +++ export 'MANPATH=/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ INTEL_PYTHONHOME=/opt/intel/debugger_2019/python/intel64/ +++ '[' -n /opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ export PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ PATH=/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ++++ uname -s +++ '[' Linux '!=' Darwin ']' +++ '[' -d /opt/intel/debugger_2019/libipt/intel64/lib ']' +++ '[' -n '$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ unset INST DIR_DEBUGGER DIR_DOCUMENTATION DEBUGGERARCH LANGUAGE_TERRITORY GDBINFO GDBMAN ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/tbb/bin/tbbvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pstl/bin/pstlvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mkl/bin/mklvars.sh intel64 +++ set_mkl_env intel64 +++ CPRO_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ export MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ MKLROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl +++ __mkl_tmp_SCRIPT_NAME=mklvars.sh +++ __mkl_tmp_MOD_NAME=mod +++ __mkl_tmp_LP64_ILP64= +++ __mkl_tmp_MOD= +++ __mkl_tmp_TARGET_ARCH= +++ __mkl_tmp_MKLVARS_VERBOSE= +++ __mkl_tmp_BAD_SWITCH= +++ '[' -z intel64 ']' +++ '[' -n intel64 ']' +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __mkl_tmp_TARGET_ARCH=intel64 +++ shift +++ '[' -n '' ']' +++ '[' -n '' ']' +++ '[' -z intel64 ']' +++ __compiler_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib +++ __mkl_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib +++ __tbb_lib_dir=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib +++ __cpath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ __subdir_arch_ia32=ia32_lin +++ __subdir_arch_intel64=intel64_lin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ __target_arch_path=intel64_lin +++ __tbb_path_arch= +++ '[' -z '' ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib ']' +++ '[' intel64_lin = ia32_lin ']' ++++ set_tbb_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin +++++ get_tbb_library_directory +++++ __tbb_tmp_lib_dir=gcc4.1 +++++ which gcc +++++ '[' 0 -eq 0 ']' ++++++ gcc --version ++++++ grep gcc ++++++ sed -e 's/^\ //' ++++++ egrep -o ' [0-9]+\.[0-9]+\.[0-9]+.*' +++++ __tbb_tmp_gcc_version_full='8.3.1 20190311 (Red Hat 8.3.1-3)' +++++ '[' 0 -eq 0 ']' ++++++ echo '8.3.1 20190311 (Red Hat 8.3.1-3)' ++++++ egrep -o '^[0-9]+\.[0-9]+\.[0-9]+' +++++ __tbb_tmp_gcc_version=8.3.1 +++++ case "${__tbb_tmp_gcc_version}" in +++++ __tbb_tmp_lib_dir=gcc4.7 +++++ echo gcc4.7 ++++ __tmp_tbb_subdir=/gcc4.7 ++++ __tmp_tbb_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 +++ __tbb_path_arch=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ set_ld_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __ld_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_library_path intel64_lin /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ __tmp_target_arch_path=intel64_lin ++++ __tmp_tbb_arch_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7 ++++ '[' intel64_lin = ia32_lin ']' ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ __tmp_library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ __library_path=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ++++ set_nls_path intel64_lin ++++ __tmp_target_arch_path=intel64_lin ++++ echo /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ __nlspath=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N +++ '[' '' = mod ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ export CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ CPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/include +++ export PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ PKG_CONFIG_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/bin/pkgconfig +++ '[' '' = verbose ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ipp/bin/ippvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/ippcp/bin/ippcpvars.sh ']' ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh ']' ++ '[' intel64 = intel64 -o '' = intel64 ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/mpi/intel64/bin/mpivars.sh +++ I_MPI_ROOT=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi +++ export I_MPI_ROOT +++ '[' -z /opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ '[' -z '' ']' +++ CLASSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/mpi.jar +++ export CLASSPATH +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z '/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' +++ MANPATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ export MANPATH +++ '[' -z '' ']' +++ i_mpi_ofi_library_internal=1 +++ i_mpi_library_kind= +++ '[' 0 -gt 0 ']' +++ case "$i_mpi_library_kind" in +++ case "$i_mpi_ofi_library_internal" in +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ export PATH +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ export LD_LIBRARY_PATH +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin ']' +++ LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin +++ export LIBRARY_PATH +++ FI_PROVIDER_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib/prov +++ export FI_PROVIDER_PATH ++ '[' -e /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh ']' ++ . /opt/intel/compilers_and_libraries_2019/linux/pkg_bin/compilervars_arch.sh intel64 linux +++ INTEL_INSTALL_DIR_ORIG= +++ INTEL_NDK_DIR_ORIG= +++ INSTALL_DIR=/opt/intel/compilers_and_libraries_2019.4.243/linux +++ NDK_DIR='' +++ NDK_ARCH= ++++ uname +++ INTEL_HOST_PLATFORM=Linux +++ '[' 2 -eq 0 ']' +++ INTEL_TARGET_ARCH=intel64 +++ INTEL_TARGET_PLATFORM=linux +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin ']' +++ PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/bin:/opt/intel/debugger_2019/gdb/intel64/bin:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/opt/rh/devtoolset-8/root/bin:/opt/oracle/developerstudio12.6/bin:/opt/open64/bin:/opt/Canopy:/usr/local/ncl-5.2.1/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/bin:/opt/intel/compilers_and_libraries_2019.4.243/linux/bin/intel64:/sbin:/usr/sbin:/bin:/usr/bin +++ '[' intel64 = ia32 ']' +++ '[' intel64 = intel64 ']' +++ NDK_ARCH=x86_64 +++ '[' -n '' ']' +++ export PATH +++ '[' linux = android ']' +++ unset ICCCFG +++ unset ICPCCFG +++ unset ICXCFG +++ unset ICPXCFG +++ unset XIARCFG +++ unset XILDCFG +++ unset INTEL_USE_ENVIRONMENT +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-9/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-12/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-13/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-14/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-15/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-16/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-17/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-18/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-19/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-21/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-22/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-23/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-24/arch-x86_64' ']' +++ for target in 9 12 13 14 15 16 17 18 19 21 22 23 24 26 +++ '[' -d '/platforms/android-26/arch-x86_64' ']' +++ '[' -d '/toolchains/x86_64-4.9/prebuilt/linux-x86_64' ']' +++ '[' Linux = Darwin ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' ']' +++ export 'LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ LD_LIBRARY_PATH='/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/libfabric/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib/release:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2019.4.243/linux/tbb/lib/intel64_lin/gcc4.7:/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin:/opt/intel/debugger_2019/libipt/intel64/lib:$LD_LIBRARY_PATH:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib:/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib:/usr/local/NETCDF-Fortran-4.4.5-ifort/lib:/usr/local/NETCDF-Fortran-4.4.5-pgi/lib:/usr/local/NETCDF-C-4.7.0-gfortran/lib:/usr/local/NETCDF-C-4.7.0-ifort/lib:/usr/local/NETCDF-C-4.7.0-pgi/lib:/usr/local/netcdf-sun64:/opt/intel/lib/intel64:/opt/intel/compilers_and_libraries/linux/mpi/intel64/lib' +++ '[' intel64 = ia32 -a -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpirt/lib/ia32_lin ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/mic ']' +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/mic/lib ']' +++ '[' -z /opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N ']' +++ export NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ NLSPATH=/opt/intel/compilers_and_libraries_2019.4.243/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2019.4.243/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/debugger_2019/gdb/intel64/share/locale/%l_%t/%N +++ '[' intel64 = ia32 ']' +++ '[' -z '' ']' +++ export INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ INTEL_LICENSE_FILE=/opt/intel/compilers_and_libraries_2019.4.243/linux/licenses:/opt/intel/licenses:/home/jenkins/intel/licenses +++ '[' -d /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ']' +++ '[' -z '/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' ']' ++++ cd /opt/intel/compilers_and_libraries_2019.4.243/linux/../../man/common ++++ pwd +++ export 'MANPATH=/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ MANPATH='/opt/intel/man/common:/opt/intel/compilers_and_libraries_2019.4.243/linux/mpi/man:/opt/intel/documentation_2019/en/debugger/gdb-ia/man/:$MANPATH:/opt/oracle/developerstudio12.6/man:$NVCOMPILERS/$NVARCH/21.3/compilers/man:/opt/oracle/developerstudio12.6/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.3/compilers/man' +++ '[' -n ']' +++ INSTALL_DIR= +++ '[' -n ']' +++ NDK_DIR= +++ unset INTEL_INSTALL_DIR_ORIG +++ unset INTEL_NDK_DIR_ORIG + bash -c 'export e3smSource=/home/jenkins/workspace/e3sm_run_gfortran_test; csh nightly_test/nightly_e3sm_scm_RICO.csh' Compset longname is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is ATM component is cam5 physics: LND component is clm4.5 physics:clm4.5 Satellite phenology: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid match is a%ne16np4_ Pes setting: grid is a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 64, 'NTASKS_ICE': 64, 'NTASKS_CPL': 64, 'NTASKS_LND': 64, 'NTASKS_WAV': 64, 'NTASKS_ROF': 64, 'NTASKS_OCN': 64, 'NTASKS_GLC': 64} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: SCAM_CAM5%SCAM_CLM45%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne16np4_l%ne16np4_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: 4b605b6 Batch_system_type is none Creating Case directory /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/case_scripts ERROR: No variable BASELINE_ROOT found in case ERROR: No variable CCSM_CPRNC found in case setting case file to env_batch.xml ERROR: No queues found /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/case_scripts/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/e3sm_run_gfortran_test/cime/config/e3sm/machines/template.st_archive Creating file case.st_archive Creating file .case.run.sh Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building Generating component namelists as part of setup Creating component namelists 2021-07-15 03:13:35 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:13:36 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:13:36 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:13:36 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:13:36 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:13:36 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:13:36 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:13:36 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:13:36 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:13:36 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists You can now run './preview_run' to get more info on how your case will be run Building case in directory /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/case_scripts sharedlib_only is False model_only is False Generating component namelists as part of build Creating component namelists 2021-07-15 03:13:38 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:13:39 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:13:39 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:13:39 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:13:39 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:13:39 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:13:39 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:13:39 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:13:39 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:13:39 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/gptl.bldlog.210715-031338 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 1 warnings Building mct with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/mct.bldlog.210715-031338 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.mct Building pio with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/pio.bldlog.210715-031338 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/csm_share.bldlog.210715-031338 Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 4 warnings - Building atm Library Building atm with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/atm.bldlog.210715-031338 - Building lnd Library - Building ice Library Building lnd with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/lnd.bldlog.210715-031338 Building ice with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/ice.bldlog.210715-031338 - Building ocn Library Building ocn with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/ocn.bldlog.210715-031338 - Building rof Library Building rof with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/rof.bldlog.210715-031338 - Building glc Library Building glc with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/glc.bldlog.210715-031338 - Building wav Library Building wav with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/wav.bldlog.210715-031338 - Building iac Library Building iac with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/iac.bldlog.210715-031338 - Building esp Library Building esp with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/esp.bldlog.210715-031338 sesp built in 0.522526 seconds siac built in 0.527507 seconds swav built in 0.559568 seconds srof built in 0.574439 seconds sglc built in 0.604825 seconds docn built in 1.333741 seconds Component ice build complete with 9 warnings Component ice build complete with 9 warnings cice built in 23.601858 seconds Component lnd build complete with 6 warnings Component lnd build complete with 6 warnings clm built in 122.800097 seconds Component atm build complete with 5 warnings Component atm build complete with 5 warnings cam built in 129.722825 seconds Building e3sm with output to /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.210715-031338 Component e3sm exe build complete with 3 warnings Time spent not building: 1.052445 sec Time spent building: 180.910943 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Creating component namelists 2021-07-15 03:16:41 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:16:41 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:16:41 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:16:41 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:16:41 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:16:41 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:16:41 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:16:41 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:16:41 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:16:41 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/clm.input_data_list' Model clm no file specified for finidat Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run 2021-07-15 03:16:42 CASE.RUN BEGINS HERE 2021-07-15 03:16:42 RUN_MODEL BEGINS HERE 2021-07-15 03:16:42 PRE_RUN_CHECK BEGINS HERE 2021-07-15 03:16:42 NAMELIST CREATION BEGINS HERE Generating namelists for /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/case_scripts Creating component namelists 2021-07-15 03:16:42 atm Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cam/cime_config/buildnml 2021-07-15 03:16:42 lnd Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/clm/cime_config/buildnml 2021-07-15 03:16:42 ice Calling /home/jenkins/workspace/e3sm_run_gfortran_test/components/cice/cime_config/buildnml 2021-07-15 03:16:42 ocn Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/data_comps/docn/cime_config/buildnml 2021-07-15 03:16:42 rof Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-15 03:16:42 glc Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-15 03:16:42 wav Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-15 03:16:42 iac Running /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-15 03:16:42 esp Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-15 03:16:42 cpl Calling /home/jenkins/workspace/e3sm_run_gfortran_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists 2021-07-15 03:16:42 NAMELIST CREATION HAS FINISHED ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-07-15 03:16:42 PRE_RUN_CHECK HAS FINISHED run command is /usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpirun -np 1 -prepend-rank /home/jenkins/workspace/e3sm_run_gfortran_test/projects/scratch/SCM_runs/test_RICO/build/e3sm.exe >> e3sm.log.$LID 2>&1 2021-07-15 03:16:42 SAVE_PRERUN_PROVENANCE BEGINS HERE 2021-07-15 03:16:42 SAVE_PRERUN_PROVENANCE HAS FINISHED 2021-07-15 03:16:42 MODEL EXECUTION BEGINS HERE 2021-07-15 03:17:43 MODEL EXECUTION HAS FINISHED 2021-07-15 03:17:43 POST_RUN_CHECK BEGINS HERE 2021-07-15 03:17:43 POST_RUN_CHECK HAS FINISHED 2021-07-15 03:17:43 RUN_MODEL HAS FINISHED 2021-07-15 03:17:43 GET_TIMING BEGINS HERE 2021-07-15 03:17:43 GET_TIMING HAS FINISHED 2021-07-15 03:17:43 SAVE_POSTRUN_PROVENANCE BEGINS HERE 2021-07-15 03:17:43 SAVE_POSTRUN_PROVENANCE HAS FINISHED check for resubmit dout_s False mach nelson resubmit_num 0 2021-07-15 03:17:43 CASE.RUN HAS FINISHED Submitted job case.run with id None RICO was successful. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS