Started by an SCM change
Obtained jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile from git <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/mitch/' class='jenkins-table__link model-link model-link--float'>mitch</a> in /home/jenkins/workspace/e3sm_run_gfortran_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
 &gt; git init /home/jenkins/workspace/e3sm_run_gfortran_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision 0e5f6b5cf9014cdf240deb9b7f2fb659e23a57a3 (refs/remotes/origin/clubb_silhs_devel)
Commit message: "Autoupdated SILHS Commit fa3e59573b8c754e973edfb4a08117a6efa14268 Author: Brian Griffin Date: Thu Aug 22 08:27:45 2024 -0500 Clubb ghost exorcism (#1159) * I am adding grid_class_new.F90 to the code as a copy of grid_class.F90."
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 0e5f6b5cf9014cdf240deb9b7f2fb659e23a57a3 # timeout=10
 &gt; git rev-list --no-walk d7f3a5c8fd25ac9f91dcdd5c0915f7de1ba180cb # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Checkout Branch and Submodules">[Pipeline] { (Checkout Branch and Submodules)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ rm -f '/home/jenkins/test_logs/e3sm_run_gfortran_test/*'
+ git submodule init
Submodule 'cime' (<a href='https://github.com/ESMCI/cime.git'>https://github.com/ESMCI/cime.git</a>) registered for path 'cime'
Submodule 'cosp2' (<a href='https://github.com/CFMIP/COSPv2.0.git'>https://github.com/CFMIP/COSPv2.0.git</a>) registered for path 'components/eam/src/physics/cosp2/external'
Submodule 'rrtmgp' (<a href='https://github.com/RobertPincus/rte-rrtmgp.git'>https://github.com/RobertPincus/rte-rrtmgp.git</a>) registered for path 'components/eam/src/physics/rrtmgp/external'
Submodule 'fates' (<a href='https://github.com/NGEET/fates.git'>https://github.com/NGEET/fates.git</a>) registered for path 'components/elm/src/external_models/fates'
Submodule 'alm-mpp' (<a href='https://github.com/MPP-LSM/MPP.git'>https://github.com/MPP-LSM/MPP.git</a>) registered for path 'components/elm/src/external_models/mpp'
Submodule 'sbetr' (<a href='https://github.com/BeTR-biogeochemistry-modeling/sbetr.git'>https://github.com/BeTR-biogeochemistry-modeling/sbetr.git</a>) registered for path 'components/elm/src/external_models/sbetr'
Submodule 'components/mpas-source' (<a href='https://github.com/MPAS-Dev/MPAS-Model.git'>https://github.com/MPAS-Dev/MPAS-Model.git</a>) registered for path 'components/mpas-source'
Submodule 'externals/YAKL' (<a href='https://github.com/mrnorman/YAKL.git'>https://github.com/mrnorman/YAKL.git</a>) registered for path 'externals/YAKL'
Submodule 'externals/cub' (<a href='https://github.com/NVlabs/cub.git'>https://github.com/NVlabs/cub.git</a>) registered for path 'externals/cub'
Submodule 'externals/kokkos' (<a href='https://github.com/E3SM-Project/kokkos.git'>https://github.com/E3SM-Project/kokkos.git</a>) registered for path 'externals/kokkos'
Submodule 'externals/scorpio' (<a href='https://github.com/E3SM-Project/scorpio.git'>https://github.com/E3SM-Project/scorpio.git</a>) registered for path 'externals/scorpio'
Submodule 'externals/scorpio_classic' (<a href='https://github.com/E3SM-Project/scorpio.git'>https://github.com/E3SM-Project/scorpio.git</a>) registered for path 'externals/scorpio_classic'
+ git submodule update
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/cime'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/rrtmgp/external'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/fates'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/mpp'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/sbetr'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/mpas-source'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/YAKL'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/cub'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/kokkos'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/scorpio'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/scorpio_classic'...
Submodule path 'cime': checked out '2b49cf54f1fb0a53832762dc29f19fc31c491d31'
Submodule path 'components/eam/src/physics/cosp2/external': checked out '34d8eef3d231a87c0f73e565f6b5d548876b294a'
Submodule path 'components/eam/src/physics/rrtmgp/external': checked out 'fdb714ea58e0fcbb23c81e0c6bf93840e5516c27'
Submodule path 'components/elm/src/external_models/fates': checked out '5534a9405bbc5d9b825bf37bd0d65147bc0fda41'
Submodule path 'components/elm/src/external_models/mpp': checked out 'c0c903e675e31e6b9ab447b0cc51ccd8a36fa7a7'
Submodule path 'components/elm/src/external_models/sbetr': checked out 'f3636700b35441dbd30bf2921310a66f238d8e9e'
Submodule path 'components/mpas-source': checked out 'bb1ea15299544e2b25144c06c621ff40fa482760'
Submodule path 'externals/YAKL': checked out '7a5777e5d0afd3dae948462f2cb769043b06d073'
Submodule path 'externals/cub': checked out 'c3cceac115c072fb63df1836ff46d8c60d9eb304'
Submodule path 'externals/kokkos': checked out '8d62288677f9f7ed20d0e6a15009f0d9087e3170'
Submodule path 'externals/scorpio': checked out '205e1e16d04aa2d449053af26204bc641d9feebf'
Submodule path 'externals/scorpio_classic': checked out '154b0320ed99395ee7e790ed1122ca8bfac3bbc0'
+ cd components/elm/src/external_models/sbetr
+ git cherry-pick -m 1 61cc9be
Auto-merging src/betr/betr_math/ODEMod.F90
Committer identity unknown

*** Please tell me who you are.

Run

  git config --global user.email "you@example.com"
  git config --global user.name "Your Name"

to set your account's default identity.
Omit --global to set the identity only in this repository.

fatal: empty ident name (for &lt;jenkins@pop-os.localdomain&gt;) not allowed
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Modify Run Scripts">[Pipeline] { (Modify Run Scripts)
</span>Stage "Modify Run Scripts" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Run BOMEX">[Pipeline] { (Run BOMEX)
</span>Stage "Run BOMEX" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="24" enclosingId="23">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="25" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="26" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="27" startId="27" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="28" startId="28" enclosingId="27" label="Run DYCOMSrf01">[Pipeline] { (Run DYCOMSrf01)
</span>Stage "Run DYCOMSrf01" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="29" enclosingId="28">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="30" startId="28">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="31" startId="27">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="32" startId="32" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="33" startId="33" enclosingId="32" label="Run RICO">[Pipeline] { (Run RICO)
</span>Stage "Run RICO" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="34" enclosingId="33">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="35" startId="33">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="36" startId="32">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="37" startId="37" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="38" startId="38" enclosingId="37" label="Run ARM97">[Pipeline] { (Run ARM97)
</span>Stage "Run ARM97" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="39" enclosingId="38">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="40" startId="38">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="41" startId="37">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="42" startId="42" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="43" startId="43" enclosingId="42" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="44" startId="44" enclosingId="43">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="45" startId="45" enclosingId="44">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="46" enclosingId="45">[Pipeline] sh
</span><span class="pipeline-node-46">+ gzip -d 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*.gz'
gzip: projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="47" enclosingId="45">[Pipeline] echo
</span><span class="pipeline-node-47">Not all logs were made for BOMEX.
</span><span class="pipeline-new-node" nodeId="48" enclosingId="45">[Pipeline] sh
</span><span class="pipeline-node-48">+ gzip -d 'projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.*.gz'
gzip: projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="49" enclosingId="45">[Pipeline] echo
</span><span class="pipeline-node-49">Not all logs were made for DYCOMSrf01.
</span><span class="pipeline-new-node" nodeId="50" enclosingId="45">[Pipeline] sh
</span><span class="pipeline-node-50">+ gzip -d 'projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.*.gz'
gzip: projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="51" enclosingId="45">[Pipeline] echo
</span><span class="pipeline-node-51">Not all logs were made for RICO.
</span><span class="pipeline-new-node" nodeId="52" enclosingId="45">[Pipeline] sh
</span><span class="pipeline-node-52">+ cp 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*' 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*' 'projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.*' /home/jenkins/test_logs/e3sm_run_gfortran_test
cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*': No such file or directory
cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*': No such file or directory
cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.*': No such file or directory
</span><span class="pipeline-new-node" nodeId="53" enclosingId="45">[Pipeline] echo
</span><span class="pipeline-node-53">Not all logs were made for this test.
</span><span class="pipeline-new-node" nodeId="54" enclosingId="45">[Pipeline] cleanWs
</span><span class="pipeline-node-54">[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
</span><span class="pipeline-new-node" nodeId="55" startId="45">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="56" startId="44">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="57" startId="57" enclosingId="43">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="58" startId="58" enclosingId="57">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="59" enclosingId="58">[Pipeline] emailext
</span><span class="pipeline-node-59">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="60" startId="58">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="61" startId="57">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="62" startId="43">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="63" startId="42">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="64" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="65" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="66" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="67" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="68" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 128
Finished: FAILURE