Started by an SCM change
Obtained jenkins_tests/e3sm_run_gfortran_test/Jenkinsfile from git <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/mitch/' class='jenkins-table__link model-link model-link--float'>mitch</a> in /home/jenkins/workspace/e3sm_run_gfortran_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
 &gt; git init /home/jenkins/workspace/e3sm_run_gfortran_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision 3ec29b165cfad789324407d03730bb7a72d0a61a (refs/remotes/origin/clubb_silhs_devel)
Commit message: "Autoupdated CLUBB_core Commit 3f865924bdcf798fa45acaa67b57c44f40c32d89 Author: Gunther Huebler Date: Wed Jul 31 17:30:51 2024 -0500 Moving pdf_params copying to copyin. This is the data structure that contains pointers, and these pointers will be different on the host and device, so it is bad in theory to copy the structure back to the CPU as it might overwrite cpu memory pointers with gpu memory pointers. In practice though I've seen no problems caused by this, I'm just making this commit preemptively, and it has already been tested with the ECT test."
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 3ec29b165cfad789324407d03730bb7a72d0a61a # timeout=10
 &gt; git rev-list --no-walk 17fdf631073cfd9d0af7371a8bb7c0bcb064bb76 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Checkout Branch and Submodules">[Pipeline] { (Checkout Branch and Submodules)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ rm -f '/home/jenkins/test_logs/e3sm_run_gfortran_test/*'
+ git submodule init
Submodule 'cime' (<a href='https://github.com/ESMCI/cime.git'>https://github.com/ESMCI/cime.git</a>) registered for path 'cime'
Submodule 'cosp2' (git@github.com:CFMIP/COSPv2.0.git) registered for path 'components/eam/src/physics/cosp2/external'
Submodule 'rrtmgp' (git@github.com:RobertPincus/rte-rrtmgp.git) registered for path 'components/eam/src/physics/rrtmgp/external'
Submodule 'fates' (git@github.com:NGEET/fates.git) registered for path 'components/elm/src/external_models/fates'
Submodule 'alm-mpp' (git@github.com:MPP-LSM/MPP.git) registered for path 'components/elm/src/external_models/mpp'
Submodule 'sbetr' (git@github.com:BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/elm/src/external_models/sbetr'
Submodule 'components/mpas-source' (<a href='https://github.com/MPAS-Dev/MPAS-Model.git'>https://github.com/MPAS-Dev/MPAS-Model.git</a>) registered for path 'components/mpas-source'
Submodule 'externals/YAKL' (git@github.com:mrnorman/YAKL.git) registered for path 'externals/YAKL'
Submodule 'externals/cub' (git@github.com:NVlabs/cub.git) registered for path 'externals/cub'
Submodule 'externals/kokkos' (<a href='https://github.com/E3SM-Project/kokkos.git'>https://github.com/E3SM-Project/kokkos.git</a>) registered for path 'externals/kokkos'
Submodule 'externals/scorpio' (<a href='https://github.com/E3SM-Project/scorpio.git'>https://github.com/E3SM-Project/scorpio.git</a>) registered for path 'externals/scorpio'
Submodule 'externals/scorpio_classic' (<a href='https://github.com/E3SM-Project/scorpio.git'>https://github.com/E3SM-Project/scorpio.git</a>) registered for path 'externals/scorpio_classic'
+ git submodule update
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/cime'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:CFMIP/COSPv2.0.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external' failed
Failed to clone 'components/eam/src/physics/cosp2/external'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/rrtmgp/external'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:RobertPincus/rte-rrtmgp.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/rrtmgp/external' failed
Failed to clone 'components/eam/src/physics/rrtmgp/external'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/fates'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:NGEET/fates.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/fates' failed
Failed to clone 'components/elm/src/external_models/fates'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/mpp'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:MPP-LSM/MPP.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/mpp' failed
Failed to clone 'components/elm/src/external_models/mpp'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/sbetr'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:BeTR-biogeochemistry-modeling/sbetr.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/elm/src/external_models/sbetr' failed
Failed to clone 'components/elm/src/external_models/sbetr'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/mpas-source'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/YAKL'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:mrnorman/YAKL.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/YAKL' failed
Failed to clone 'externals/YAKL'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/cub'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:NVlabs/cub.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/cub' failed
Failed to clone 'externals/cub'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/kokkos'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/scorpio'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/externals/scorpio_classic'...
Cloning into '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external'...
git@github.com: Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:CFMIP/COSPv2.0.git' into submodule path '/home/jenkins/workspace/e3sm_run_gfortran_test/components/eam/src/physics/cosp2/external' failed
Failed to clone 'components/eam/src/physics/cosp2/external' a second time, aborting
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Modify Run Scripts">[Pipeline] { (Modify Run Scripts)
</span>Stage "Modify Run Scripts" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="19" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="20" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="21" startId="21" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="21" label="Run BOMEX">[Pipeline] { (Run BOMEX)
</span>Stage "Run BOMEX" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="23" startId="22">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="24" startId="21">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="26" startId="26" enclosingId="25" label="Run DYCOMSrf01">[Pipeline] { (Run DYCOMSrf01)
</span>Stage "Run DYCOMSrf01" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="27" startId="26">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="28" startId="25">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="29" startId="29" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="30" startId="30" enclosingId="29" label="Run RICO">[Pipeline] { (Run RICO)
</span>Stage "Run RICO" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="31" startId="30">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="32" startId="29">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="33" startId="33" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="34" startId="34" enclosingId="33" label="Run ARM97">[Pipeline] { (Run ARM97)
</span>Stage "Run ARM97" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="35" startId="34">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="36" startId="33">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="37" startId="37" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="38" startId="38" enclosingId="37" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="39" startId="39" enclosingId="38">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="40" startId="40" enclosingId="39">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="41" enclosingId="40">[Pipeline] sh
</span><span class="pipeline-node-41">+ gzip -d 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*.gz'
gzip: projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="42" enclosingId="40">[Pipeline] echo
</span><span class="pipeline-node-42">Not all logs were made for BOMEX.
</span><span class="pipeline-new-node" nodeId="43" enclosingId="40">[Pipeline] sh
</span><span class="pipeline-node-43">+ gzip -d 'projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.*.gz'
gzip: projects/scratch/SCM_runs/test_DYCOMSrf01/build/e3sm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="44" enclosingId="40">[Pipeline] echo
</span><span class="pipeline-node-44">Not all logs were made for DYCOMSrf01.
</span><span class="pipeline-new-node" nodeId="45" enclosingId="40">[Pipeline] sh
</span><span class="pipeline-node-45">+ gzip -d 'projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.*.gz'
gzip: projects/scratch/SCM_runs/test_RICO/build/e3sm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="46" enclosingId="40">[Pipeline] echo
</span><span class="pipeline-node-46">Not all logs were made for RICO.
</span><span class="pipeline-new-node" nodeId="47" enclosingId="40">[Pipeline] sh
</span><span class="pipeline-node-47">+ cp 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*' 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*' 'projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.*' /home/jenkins/test_logs/e3sm_run_gfortran_test
cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/build/e3sm.bldlog.*': No such file or directory
cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/run/atm.log.*': No such file or directory
cp: cannot stat 'projects/scratch/SCM_runs/test_BOMEX/run/e3sm.log.*': No such file or directory
</span><span class="pipeline-new-node" nodeId="48" enclosingId="40">[Pipeline] echo
</span><span class="pipeline-node-48">Not all logs were made for this test.
</span><span class="pipeline-new-node" nodeId="49" enclosingId="40">[Pipeline] cleanWs
</span><span class="pipeline-node-49">[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
</span><span class="pipeline-new-node" nodeId="50" startId="40">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="51" startId="39">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="52" startId="52" enclosingId="38">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="53" startId="53" enclosingId="52">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="54" enclosingId="53">[Pipeline] emailext
</span><span class="pipeline-node-54">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="55" startId="53">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="56" startId="52">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="57" startId="38">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="58" startId="37">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="59" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="60" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="61" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="62" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="63" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE