Started by an SCM change
Obtained jenkins_tests/e3sm_ne4_silhs_run_gfortran_test/Jenkinsfile from git <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/malan/' class='jenkins-table__link model-link model-link--float'>malan</a> in /home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
 &gt; git init /home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.30.2'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision c41c1e3f9e700c406950479d82416172e568f487 (refs/remotes/origin/clubb_silhs_devel)
Commit message: "Autoupdated CLUBB_core Commit ef65d2727180b4c76d113cc0da1f6b5d4d3f1610 Author: bmg929 Date: Thu Jul 11 22:36:57 2024 -0500 This code in adj_low_res_nu was using the ghost point when grid_type = 2. This has now been changed to not include the ghost level. This code is BIT_CHANGING."
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/e3sm.git'>https://github.com/larson-group/e3sm.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f c41c1e3f9e700c406950479d82416172e568f487 # timeout=10
 &gt; git rev-list --no-walk e0525a5897b8eb3f00defd398aee668adb45d256 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Checkout Branch and Submodules">[Pipeline] { (Checkout Branch and Submodules)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ git submodule init
Submodule 'cime' (<a href='https://github.com/ESMCI/cime.git'>https://github.com/ESMCI/cime.git</a>) registered for path 'cime'
Submodule 'cosp2' (git@github.com:CFMIP/COSPv2.0.git) registered for path 'components/eam/src/physics/cosp2/external'
Submodule 'rrtmgp' (git@github.com:RobertPincus/rte-rrtmgp.git) registered for path 'components/eam/src/physics/rrtmgp/external'
Submodule 'fates' (git@github.com:NGEET/fates.git) registered for path 'components/elm/src/external_models/fates'
Submodule 'alm-mpp' (git@github.com:MPP-LSM/MPP.git) registered for path 'components/elm/src/external_models/mpp'
Submodule 'sbetr' (git@github.com:BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/elm/src/external_models/sbetr'
Submodule 'components/mpas-source' (<a href='https://github.com/MPAS-Dev/MPAS-Model.git'>https://github.com/MPAS-Dev/MPAS-Model.git</a>) registered for path 'components/mpas-source'
Submodule 'externals/YAKL' (git@github.com:mrnorman/YAKL.git) registered for path 'externals/YAKL'
Submodule 'externals/cub' (git@github.com:NVlabs/cub.git) registered for path 'externals/cub'
Submodule 'externals/kokkos' (<a href='https://github.com/E3SM-Project/kokkos.git'>https://github.com/E3SM-Project/kokkos.git</a>) registered for path 'externals/kokkos'
Submodule 'externals/scorpio' (<a href='https://github.com/E3SM-Project/scorpio.git'>https://github.com/E3SM-Project/scorpio.git</a>) registered for path 'externals/scorpio'
Submodule 'externals/scorpio_classic' (<a href='https://github.com/E3SM-Project/scorpio.git'>https://github.com/E3SM-Project/scorpio.git</a>) registered for path 'externals/scorpio_classic'
+ git submodule update
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/cime'...
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/cosp2/external'...
Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:CFMIP/COSPv2.0.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/cosp2/external' failed
Failed to clone 'components/eam/src/physics/cosp2/external'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/rrtmgp/external'...
Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:RobertPincus/rte-rrtmgp.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/rrtmgp/external' failed
Failed to clone 'components/eam/src/physics/rrtmgp/external'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/fates'...
Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:NGEET/fates.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/fates' failed
Failed to clone 'components/elm/src/external_models/fates'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/mpp'...
Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:MPP-LSM/MPP.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/mpp' failed
Failed to clone 'components/elm/src/external_models/mpp'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/sbetr'...
Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:BeTR-biogeochemistry-modeling/sbetr.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/elm/src/external_models/sbetr' failed
Failed to clone 'components/elm/src/external_models/sbetr'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/mpas-source'...
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/YAKL'...
Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:mrnorman/YAKL.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/YAKL' failed
Failed to clone 'externals/YAKL'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/cub'...
Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:NVlabs/cub.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/cub' failed
Failed to clone 'externals/cub'. Retry scheduled
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/kokkos'...
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/scorpio'...
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/externals/scorpio_classic'...
Cloning into '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/cosp2/external'...
Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:CFMIP/COSPv2.0.git' into submodule path '/home/jenkins/workspace/e3sm_ne4_silhs_run_gfortran_test/components/eam/src/physics/cosp2/external' failed
Failed to clone 'components/eam/src/physics/cosp2/external' a second time, aborting
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Remove Old Output">[Pipeline] { (Remove Old Output)
</span>Stage "Remove Old Output" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="19" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="20" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="21" startId="21" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="21" label="Run">[Pipeline] { (Run)
</span>Stage "Run" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="23" startId="22">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="24" startId="21">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="26" startId="26" enclosingId="25" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="27" startId="27" enclosingId="26">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="28" startId="28" enclosingId="27">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="29" enclosingId="28">[Pipeline] sh
</span><span class="pipeline-node-29">+ gzip -d '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.*.gz'
gzip: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/build/e3sm.bldlog.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="30" enclosingId="28">[Pipeline] echo
</span><span class="pipeline-node-30">E3SM build logs were not made.
</span><span class="pipeline-new-node" nodeId="31" enclosingId="28">[Pipeline] sh
</span><span class="pipeline-node-31">+ gzip -d '/home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/atm.log.*.gz'
gzip: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/run/atm.log.*.gz: No such file or directory
</span><span class="pipeline-new-node" nodeId="32" enclosingId="28">[Pipeline] echo
</span><span class="pipeline-node-32">Run logs were not all made.
</span><span class="pipeline-new-node" nodeId="33" enclosingId="28">[Pipeline] cleanWs
</span><span class="pipeline-node-33">[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
</span><span class="pipeline-new-node" nodeId="34" startId="28">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="35" startId="27">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="36" startId="36" enclosingId="26">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="37" startId="37" enclosingId="36">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="38" enclosingId="37">[Pipeline] emailext
</span><span class="pipeline-node-38">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="39" startId="37">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="40" startId="36">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="41" startId="26">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="42" startId="25">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="43" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="44" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="45" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="46" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="47" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE