Started by user Gunther Huebler Obtained jenkins_tests/e3sm_ne4_silhs_run_test/Jenkinsfile from git https://github.com/larson-group/e3sm.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/e3sm_ne4_silhs_run_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/e3sm.git > git init /home/jenkins/workspace/e3sm_ne4_silhs_run_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/e3sm.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/e3sm.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/e3sm.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision be52ec1b3b889fa26e9c8c14dac67b4cf0554e8e (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f be52ec1b3b889fa26e9c8c14dac67b4cf0554e8e # timeout=10 Commit message: "Creating jenkins test to run new ne4 e3sm test. larson-group/cam#38" First time build. Skipping changelog. [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Branch and Submodules) [Pipeline] sh + git submodule init Submodule 'components/cam/src/physics/rrtmgp/external' (https://github.com/RobertPincus/rte-rrtmgp.git) registered for path 'components/cam/src/physics/rrtmgp/external' Submodule 'components/clm/src/external_models/fates' (https://github.com/NGEET/fates.git) registered for path 'components/clm/src/external_models/fates' Submodule 'alm-mpp' (https://github.com/MPP-LSM/MPP.git) registered for path 'components/clm/src/external_models/mpp' Submodule 'sbetr' (https://github.com/BeTR-biogeochemistry-modeling/sbetr.git) registered for path 'components/clm/src/external_models/sbetr' Submodule 'components/mpas-source' (https://github.com/MPAS-Dev/MPAS-Model.git) registered for path 'components/mpas-source' Submodule 'externals/scorpio_classic' (https://github.com/E3SM-Project/scorpio.git) registered for path 'externals/scorpio_classic' + git submodule update Cloning into 'components/cam/src/physics/rrtmgp/external'... Submodule path 'components/cam/src/physics/rrtmgp/external': checked out '0b1cffdd51a35045c28aae314e2b29e2a663b5e6' Cloning into 'components/clm/src/external_models/fates'... Submodule path 'components/clm/src/external_models/fates': checked out '1ad93c311ed1a5d45df656b9031c8714a7071e64' Cloning into 'components/clm/src/external_models/mpp'... Submodule path 'components/clm/src/external_models/mpp': checked out '82ef0c1a37ffd469e9a6ce84dbf487c6ef8762b2' Cloning into 'components/clm/src/external_models/sbetr'... Submodule path 'components/clm/src/external_models/sbetr': checked out 'd71fb2df928099bacc4e9a3a9f4b8a1f2a6e37a1' Cloning into 'components/mpas-source'... Submodule path 'components/mpas-source': checked out 'bb1ea15299544e2b25144c06c621ff40fa482760' Cloning into 'externals/scorpio_classic'... Submodule path 'externals/scorpio_classic': checked out '1e538b56fa7cfa209c119e866a95669875eb200d' [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) [Pipeline] sh + bash -c 'csh nightly_test/nightly_e3sm_ne4_silhs.csh' run_e3sm: ++++++++ run_e3sm starting (Tue Jul 13 14:00:50 CDT 2021), version 3.0.22 ++++++++ run_e3sm: $case_name = nelson.mg2_def.ne4_ne4 run_e3sm: -------- Starting create_newcase -------- run_e3sm: /home/jenkins/workspace/e3sm_ne4_silhs_run_test//cime/scripts/create_newcase --case nelson.mg2_def.ne4_ne4 --compset FC5AV1C-L --script-root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts --res ne4_ne4 --pecount M --handle-preexisting-dirs u --mach nelson --output-root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4 --project condo Compset longname is 2000_CAM5%AV1C-L_CLM45%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/e3sm_ne4_silhs_run_test/components/cam/cime_config/config_compsets.xml Automatically adding SIAC to compset Automatically adding SESP to compset Compset forcing is Com forcing is present day: ATM component is cam5 physics:CAM with complete set of E3SM atmospheric mods for V1 (72 layers model) and ACES4BGC SOAG emissions- v04p2: LND component is clm4.5 physics:clm4.5 Satellite phenology:clm4.5 Satellite phenology with black carbon deposition: ICE component is prescribed cice: OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component IAC component is Stub iac component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/config/e3sm/allactive/config_pesall.xml Machine is nelson Pes setting: grid is a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Pes setting: compset is 2000_CAM5%AV1C-L_CLM45%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Pes setting: tasks is {'NTASKS_ATM': 16, 'NTASKS_ICE': 16, 'NTASKS_CPL': 16, 'NTASKS_LND': 16, 'NTASKS_WAV': 16, 'NTASKS_ROF': 16, 'NTASKS_OCN': 16, 'NTASKS_GLC': 16} Pes setting: threads is {'NTHRDS_ICE': 1, 'NTHRDS_ATM': 1, 'NTHRDS_ROF': 1, 'NTHRDS_LND': 1, 'NTHRDS_WAV': 1, 'NTHRDS_OCN': 1, 'NTHRDS_CPL': 1, 'NTHRDS_GLC': 1} Pes setting: rootpe is {'ROOTPE_OCN': 0, 'ROOTPE_LND': 0, 'ROOTPE_ATM': 0, 'ROOTPE_ICE': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0, 'ROOTPE_ROF': 0, 'ROOTPE_GLC': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: 2000_CAM5%AV1C-L_CLM45%SPBC_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SIAC_SESP Grid is: a%ne4np4_l%ne4np4_oi%ne4np4_r%null_g%null_w%null_z%null_m%oQU240 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'siac', 'sesp', 'drv'] No charge_account info available, using value from PROJECT e3sm model version found: be52ec1 Batch_system_type is none Creating Case directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts run_e3sm: -------- Finished create_newcase -------- run_e3sm: Project used for submission: condo run_e3sm: Configuring E3SM to use the COSP simulator. run_e3sm: -------- Starting case.setup -------- run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.setup ERROR: inputdata root is not a directory or is not readable: /home/jenkins/projects/cesm-inputdata run_e3sm: -------- Finished case.setup -------- run_e3sm: Creating logical links to make navigating easier. run_e3sm: Note: Beware of using ".." with the links, since the behavior of shell commands can vary. run_e3sm: /home/jenkins/workspace/e3sm_ne4_silhs_run_test/nightly_test/nightly_e3sm_ne4_silhs.csh=a_run_link run_e3sm: run_root /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4 run_e3sm: run_dir /home/jenkins/workspace/e3sm_ne4_silhs_run_test/nightly_test/nightly_e3sm_ne4_silhs.csh=a_run_link setting case file to env_run.xml run_e3sm: -------- Starting Build -------- run_e3sm: WARNING: Make sure there are no double-slashes (//) in the build command below: => Will cause a build error run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.build Building case in directory /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts sharedlib_only is False model_only is False ERROR: ERROR: must invoke case.setup script before calling build script run_e3sm: -------- Finished Build -------- Creating component namelists 2021-07-13 14:01:01 atm Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/components/cam/cime_config/buildnml 2021-07-13 14:01:01 lnd Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/components/clm/cime_config/buildnml WARNING: No file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/user_nl_clm found in case directory 2021-07-13 14:01:01 ice Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/components/cice/cime_config/buildnml WARNING: No file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/user_nl_cice found in case directory 2021-07-13 14:01:01 ocn Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/data_comps/docn/cime_config/buildnml File not found: domainfile = "/home/jenkins/projects/cesm-inputdata/share/domains/domain.ocn.ne4np4_oQU240.160614.nc", will attempt to download in check_input_data phase 2021-07-13 14:01:02 rof Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-13 14:01:02 glc Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-13 14:01:02 wav Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-13 14:01:02 iac Running /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-13 14:01:02 esp Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-13 14:01:02 cpl Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists run_e3sm: WARNING: This script does not have batch directives for $machine=nelson run_e3sm: Assuming default E3SM values. run_e3sm: condo not recognized as a group, results must be shared manually run_e3sm: $model_start_type = initial (This is NOT necessarily related to RUN_TYPE) run_e3sm: -------- Starting Submission to Run Queue -------- run_e3sm: SUBMITTING JOB: run_e3sm: /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/case.submit Creating component namelists 2021-07-13 14:01:05 atm Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/components/cam/cime_config/buildnml 2021-07-13 14:01:05 lnd Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/components/clm/cime_config/buildnml WARNING: No file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/user_nl_clm found in case directory 2021-07-13 14:01:05 ice Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/components/cice/cime_config/buildnml WARNING: No file /home/jenkins/E3SM_simulations/nelson.mg2_def.ne4_ne4/case_scripts/user_nl_cice found in case directory 2021-07-13 14:01:05 ocn Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/data_comps/docn/cime_config/buildnml File not found: domainfile = "/home/jenkins/projects/cesm-inputdata/share/domains/domain.ocn.ne4np4_oQU240.160614.nc", will attempt to download in check_input_data phase 2021-07-13 14:01:05 rof Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/srof/cime_config/buildnml 2021-07-13 14:01:05 glc Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/sglc/cime_config/buildnml 2021-07-13 14:01:05 wav Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/swav/cime_config/buildnml 2021-07-13 14:01:05 iac Running /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/siac/cime_config/buildnml 2021-07-13 14:01:05 esp Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/components/stub_comps/sesp/cime_config/buildnml 2021-07-13 14:01:05 cpl Calling /home/jenkins/workspace/e3sm_ne4_silhs_run_test/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Model docn missing file domain1 = '/home/jenkins/projects/cesm-inputdata/ocn/docn7/' Model docn missing file file1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/sst/sst_HadOIBl_bc_1x1_clim_c101029.nc' Model docn missing file domainfile = '/home/jenkins/projects/cesm-inputdata/share/domains/domain.ocn.ne4np4_oQU240.160614.nc' Loading input file list: 'Buildconf/clm.input_data_list' Model clm missing file fsnowaging = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc' Model clm missing file fsoilordercon = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/paramdata/CNP_parameters_c131108.nc' Model clm missing file fsnowoptics = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_mam_c160322.nc' Model clm missing file fsurdat = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/surfdata_map/surfdata_ne4np4_simyr2000_c160614.nc' Model clm missing file fatmlndfrc = '/home/jenkins/projects/cesm-inputdata/share/domains/domain.lnd.ne4np4_oQU240.160614.nc' Model clm missing file paramfile = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/paramdata/clm_params_c180301.nc' Model clm missing file finidat = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/initdata_map/clmi.ICRUCLM45.ne4_oQU240.67a0f98.0001-01-04-00000.nc' Model clm missing file stream_fldfilename_lai = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/lai_streams/MODISPFTLAI_0.5x0.5_c140711.nc' Loading input file list: 'Buildconf/cam.input_data_list' Model cam missing file depvel_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/dvel/depvel_monthly.nc' Model cam missing file tracer_cnst_filelist = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/oxid/oxid_1.9x2.5_L26_clim_list.c090805.txt' Model cam missing file chlorine_loading_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/ub/EESC_1850-2100_c090603.nc' Model cam missing file depvel_lnd_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/dvel/regrid_vegetation.nc' Model cam missing file xs_long_file = '/home/jenkins/projects/cesm-inputdata/atm/waccm/phot/temp_prs_GT200nm_JPL10_c130206.nc' Model cam missing file rsf_file = '/home/jenkins/projects/cesm-inputdata/atm/waccm/phot/RSF_GT200nm_v3.0_c080811.nc' Model cam missing file clim_soilw_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/dvel/clim_soilw.nc' Model cam missing file drydep_srf_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mam/atmsrf_ne4np4_c151204.nc' Model cam missing file exo_coldens_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/phot/exo_coldens.nc' Model cam missing file tracer_cnst_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/oxid/oxid_1.9x2.5_L26_1850-2005_c091123.nc' Model cam missing file linoz_data_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/ub/linoz1800-2100_2006jpl_climo_1.9x2.5_26L_extended.c160204.nc' Model cam missing file season_wes_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/dvel/season_wes.nc' Model cam missing file linoz_data_path = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/ub' Model cam missing file solar_data_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/solar/spectral_irradiance_Lean_1976-2007_ave_c20160517.nc' Model cam missing file tropopause_climo_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart/ub/clim_p_trop.nc' Model cam missing file water_refindex_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/water_refindex_rrtmg_c080910.nc' Model cam missing file liqopticsfile = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/F_nwvl200_mu20_lam50_res64_t298_c080428.nc' Model cam missing file iceopticsfile = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/iceoptics_c080917.nc' Model cam missing file fsnowoptics = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_mam_c160322.nc' Model cam missing file soil_erod_file = '/home/jenkins/projects/cesm-inputdata/atm/cam/dst/dst_1.9x2.5_c090203.nc' Model cam missing file ncdata = '/home/jenkins/projects/cesm-inputdata/atm/cam/inic/homme/cami_mam3_Linoz_ne4np4_L72_c160909.nc' Model cam missing file bnd_topo = '/home/jenkins/projects/cesm-inputdata/atm/cam/topo/USGS-gtopo30_ne4np4_16x.c20160612.nc' Model cam missing file mam_mom_filename = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mam/marine_BGC//monthly_macromolecules_0.1deg_bilinear_latlon_year01_merge_date.nc' Model cam missing file gw_drag_file = '/home/jenkins/projects/cesm-inputdata/atm/waccm/gw/newmfspectra40_dc25.nc' Model cam missing file ext_frc_specifier for SO2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so2_elev_1850-2014_c180205.nc' Model cam missing file ext_frc_specifier for SOAG = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_soag_elev_1850-2014_c180205.nc' Model cam missing file ext_frc_specifier for bc_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_bc_a4_elev_1850-2014_c180205.nc' Model cam missing file ext_frc_specifier for num_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a1_elev_1850-2014_c180205.nc' Model cam missing file ext_frc_specifier for num_a2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a2_elev_1850-2014_c180205.nc' Model cam missing file ext_frc_specifier for num_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a4_elev_1850-2014_c180205.nc' Model cam missing file ext_frc_specifier for pom_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_pom_a4_elev_1850-2014_c180205.nc' Model cam missing file ext_frc_specifier for so4_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so4_a1_elev_1850-2014_c180205.nc' Model cam missing file ext_frc_specifier for so4_a2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so4_a2_elev_1850-2014_c180205.nc' Model cam missing file srf_emis_specifier for DMS = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DMSflux.2000.1deg_latlon_conserv.POPmonthlyClimFromACES4BGC_c20160226.nc' Model cam missing file srf_emis_specifier for SO2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so2_surf_1850-2014_c180205.nc' Model cam missing file srf_emis_specifier for bc_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_bc_a4_surf_1850-2014_c180205.nc' Model cam missing file srf_emis_specifier for num_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a1_surf_1850-2014_c180205.nc' Model cam missing file srf_emis_specifier for num_a2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a2_surf_1850-2014_c180205.nc' Model cam missing file srf_emis_specifier for num_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_num_a4_surf_1850-2014_c180205.nc' Model cam missing file srf_emis_specifier for pom_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_pom_a4_surf_1850-2014_c180205.nc' Model cam missing file srf_emis_specifier for so4_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so4_a1_surf_1850-2014_c180205.nc' Model cam missing file srf_emis_specifier for so4_a2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/chem/trop_mozart_aero/emis/DECK_ne30/cmip6_mam4_so4_a2_surf_1850-2014_c180205.nc' Model cam missing file mode_defs for so4_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc' Model cam missing file mode_defs for pom_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc' Model cam missing file mode_defs for soa_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc' Model cam missing file mode_defs for bc_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc' Model cam missing file mode_defs for dst_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc' Model cam missing file mode_defs for ncl_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc' Model cam missing file mode_defs for mom_a1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc' Model cam missing file mode_defs for so4_a2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc' Model cam missing file mode_defs for soa_a2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc' Model cam missing file mode_defs for ncl_a2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc' Model cam missing file mode_defs for mom_a2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc' Model cam missing file mode_defs for dst_a3 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc' Model cam missing file mode_defs for ncl_a3 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc' Model cam missing file mode_defs for so4_a3 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc' Model cam missing file mode_defs for bc_a3 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc' Model cam missing file mode_defs for pom_a3 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc' Model cam missing file mode_defs for soa_a3 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc' Model cam missing file mode_defs for mom_a3 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc' Model cam missing file mode_defs for pom_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc' Model cam missing file mode_defs for bc_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc' Model cam missing file mode_defs for mom_a4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/poly_rrtmg_c130816.nc' Model cam missing file rad_climate for mam4_mode1 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_c141106.nc' Model cam missing file rad_climate for mam4_mode2 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/mam4_mode2_rrtmg_c130628.nc' Model cam missing file rad_climate for mam4_mode3 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_c141106.nc' Model cam missing file rad_climate for mam4_mode4 = '/home/jenkins/projects/cesm-inputdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc' Loading input file list: 'Buildconf/cice.input_data_list' Model cice missing file fsnowoptics = '/home/jenkins/projects/cesm-inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_mam_c160322.nc' Model cice missing file grid_file = '/home/jenkins/projects/cesm-inputdata/share/domains/domain.ocn.ne4np4_oQU240.160614.nc' Model cice missing file kmt_file = '/home/jenkins/projects/cesm-inputdata/share/domains/domain.ocn.ne4np4_oQU240.160614.nc' Model cice missing file stream_fldfilename = '/home/jenkins/projects/cesm-inputdata/atm/cam/sst/sst_HadOIBl_bc_1x1_clim_c101029.nc' Model cice missing file stream_domfilename = '/home/jenkins/projects/cesm-inputdata/ocn/docn7/domain.ocn.1x1.111007.nc' Using protocol wget with user and passwd Using protocol svn with user and passwd Client protocol None not enabled Checking server https://web.lcrc.anl.gov/public/e3sm/inputdata/ with protocol wget Using protocol wget with user and passwd Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Model docn missing file domain1 = '/home/jenkins/projects/cesm-inputdata/ocn/docn7/' Trying to download file: 'ocn/docn7' to path '/home/jenkins/projects/cesm-inputdata/ocn/docn7' using WGET protocol. Creating directory /home/jenkins/projects/cesm-inputdata/ocn/docn7 Sending inAborted by Gunther Hueblerterrupt signal to process Terminated run_e3sm: -------- Finished Submission to Run Queue -------- run_e3sm: ++++++++ run_e3sm Completed (Tue Jul 13 14:28:21 CDT 2021) ++++++++ [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: ABORTED