Started by user <a href='/jenkins/user/ebel' class='jenkins-table__link model-link model-link--float'>Daniel Ebel</a>
Checking out git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> into /home/jenkins/workspace/compare_jax_vs_fortran_test_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/compare_jax_vs_fortran/Jenkinsfile
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/compare_jax_vs_fortran_test_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials larsongroupsysadmin github token
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/jenkins_jax_vs_fortran^{commit} # timeout=10
Checking out Revision fedc57cba4f8b51ebe9568a2c437d6db9f388da9 (refs/remotes/origin/jenkins_jax_vs_fortran)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f fedc57cba4f8b51ebe9568a2c437d6db9f388da9 # timeout=10
Commit message: "limited to only one process. Find out built time"
 &gt; git rev-list --no-walk 8a1b1d0cdaa4de85eb5cc6a0f9e3825e04218e9d # timeout=10
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/compare_jax_vs_fortran_test_branch
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/compare_jax_vs_fortran_test_branch # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials larsongroupsysadmin github token
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/jenkins_jax_vs_fortran^{commit} # timeout=10
Checking out Revision fedc57cba4f8b51ebe9568a2c437d6db9f388da9 (refs/remotes/origin/jenkins_jax_vs_fortran)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f fedc57cba4f8b51ebe9568a2c437d6db9f388da9 # timeout=10
Commit message: "limited to only one process. Find out built time"
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Compile">[Pipeline] { (Compile)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -debug
-- The Fortran compiler identification is GNU 13.1.0
-- The C compiler identification is GNU 13.1.0
-- The CXX compiler identification is GNU 13.1.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gfortran - skipped
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiling with double precision
-- Performing Test NETCDF_ABI_COMPATIBLE
-- Performing Test NETCDF_ABI_COMPATIBLE - Success
-- SUCCESS: netcdf-fortran found.
--   -&gt; Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so
--   -&gt; Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/build/gcc_DEBUG_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/build/gcc_DEBUG_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble
about to cmnake /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/build/gcc_DEBUG_PRECdouble
Running CMake configure...
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[637/927] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_operations.F90.o
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/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/CLUBB_core/penta_bicgstab_solver.F90:140:10:

  140 |       if ( norm_rhs == 0.0) then
      |          1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[642/927] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/corr_varnce_module.F90.o
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[652/927] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o
[653/927] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o
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[655/927] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/CLUBB_core/remapping_module.F90:1210:43:

 1210 |             if(f(i,k+1)*f(i,k-1)&lt;zero .and. df2(i,k)/=zero) then
      |                                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/CLUBB_core/remapping_module.F90:1104:15:

 1104 |             if(dm(i) == zero) then
      |               1
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/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/CLUBB_core/parameters_tunable.F90:1822:30:

 1822 |   subroutine unpack_parameters &amp;
      |                              ^
Warning: 'unpack_parameters' defined but not used [-Wunused-function]
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/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/SILHS/silhs_importance_sample_module.F90:642:62:

  637 |       do category=1, num_importance_categories
      |                                              2                
......
  642 |                rand_vect(sample) &lt;  category_cumulative_probs(category+1) ) then
      |                                                              1
Warning: Array reference at (1) out of bounds (9 &gt; 8) in loop beginning at (2) [-Wdo-subscript]
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/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Numerical_recipes/ran_state.f90:8:59:

    8 |   INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1
      |                                                           1
Warning: Integer outside symmetric range implied by Standard Fortran at (1)
[811/927] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o
[812/927] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o
[813/927] Linking Fortran static library src/Numerical_recipes/libnumerical_recipes_lib.a
[814/927] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o
[815/927] Linking Fortran static library src/Radiation/libradiation_lib.a
[816/927] Generating Fortran dyndep file src/Input_fields/CMakeFiles/input_fields_lib.dir/Fortran.dd
[817/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o
[818/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o
[819/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o
[820/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o
[821/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o
[822/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/input_reader.F90:498:28:

  491 |     do i=1, dim_grid
      |                    2        
......
  498 |         if ( grid(i) &lt; grid(i-1) ) then
      |                            1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2) [-Wdo-subscript]
[823/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o
[824/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o
[825/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o
[826/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1038:15:

 1038 |             if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = &amp;
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1040:15:

 1040 |             if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = &amp;
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1042:15:

 1042 |             if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = &amp;
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1045:15:

 1045 |             if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = &amp;
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1047:15:

 1047 |             if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = &amp;
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1049:15:

 1049 |             if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = &amp;
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:356:13:

  356 |      if( ANY(Ts_in == 0.0) ) then
      |             1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:620:12:

  620 |          if(T_in(i,nlev+1)/=missing_value) then
      |            1
Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:636:12:

  636 |          if(T_in(i,nlev+1)==missing_value) &amp;
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:638:12:

  638 |          if(q_in(i,nlev+1)==missing_value) &amp;
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:640:12:

  640 |          if(u_in(i,nlev+1)==missing_value) &amp;
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:642:12:

  642 |          if(v_in(i,nlev+1)==missing_value) &amp;
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:647:15:

  647 |             if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = &amp;
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:651:15:

  651 |             if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = &amp;
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:658:12:

  658 |          if(ug_in(i,nlev+1)==missing_value) &amp;
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:660:12:

  660 |          if(vg_in(i,nlev+1)==missing_value) &amp;
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1252:42:

 1252 |   character     dim_name*( NF90_MAX_NAME )
      |                                          1
Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:33:

 1254 |   integer     var_ndims, dim_size, dims_set, i, n, var_type
      |                                 1
Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:43:

 1254 |   integer     var_ndims, dim_size, dims_set, i, n, var_type
      |                                           1
Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:46:

 1254 |   integer     var_ndims, dim_size, dims_set, i, n, var_type
      |                                              1
Warning: Unused variable 'i' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1237:60:

 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &amp;
      |                                                            1
Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1237:54:

 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &amp;
      |                                                      1
Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1238:23:

 1238 |      var, use_NF90_REAL, status, required)
      |                       1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:1167:67:

 1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, &amp;
      |                                                                   1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:751:51:

  751 |                                get_add_surface_data, ntime, &amp;
      |                                                   1
Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:750:81:

  750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, &amp;
      |                                                                                 1
Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:290:32:

  290 |    integer :: STATUS, i, n, nlat, nlon
      |                                1
Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:290:38:

  290 |    integer :: STATUS, i, n, nlat, nlon
      |                                      1
Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_core/readiopdata_core_module.F90:291:19:

  291 |    integer :: varID, NCID
      |                   1
Warning: Unused variable 'varid' declared at (1) [-Wunused-variable]
[827/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_module.F90:260:16:

  260 |     integer :: k
      |                1
Warning: Unused variable 'k' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_module.F90:264:17:

  264 |       qtm_forcing  ! Specified total water spec. humidity tendency    [kg/kg/s]
      |                 1
Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/readiopdata_module.F90:243:31:

  243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing )
      |                               1
Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument]
[828/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:39:8:

   39 |     use constants_clubb, only:  &amp;
      |        1
Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:57:8:

   57 |     use input_names, only: &amp;
      |        1
Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:39:8:

   39 |     use constants_clubb, only:  &amp;
      |        1
Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:165:13:

  165 |       p_in_Pa, &amp; ! Pressure                               [Pa]
      |             1
Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:160:8:

  160 |       rt,      &amp; ! Total water mixing ratio sounding      [kg/kg]
      |        1
Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:166:10:

  166 |       subs       ! Vertical velocity sounding             [m/s or Pa/s]
      |          1
Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:159:11:

  159 |       theta,   &amp; ! Liquid potential temperature sounding  [K]
      |           1
Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:161:7:

  161 |       u,       &amp; ! u wind sounding                        [m/s]
      |       1
Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:163:8:

  163 |       ug,      &amp; ! u geostrophic wind sounding            [m/s]
      |        1
Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:162:7:

  162 |       v,       &amp; ! v wind sounding                        [m/s]
      |       1
Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:164:8:

  164 |       vg,      &amp; ! v geostrophic wind sounding            [m/s]
      |        1
Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Input_fields/sounding.F90:158:7:

  158 |       z,       &amp; ! Altitude                               [m]
      |       1
Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[829/927] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
[830/927] Linking Fortran static library src/Input_fields/libinput_fields_lib.a
[831/927] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd
[832/927] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd
[833/927] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd
[834/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o
[835/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o
[836/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o
[837/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o
[838/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o
[839/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o
[840/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o
[841/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o
[842/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[843/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o
[844/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[845/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o
[846/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o
[847/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o
[848/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[849/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Microphys/ice_dfsn_module.F90:272:25:

  207 |     do k = gr%nzt, 1, -1
      |                        2 
......
  272 |           mass_ice_cryst(k-1) = mass_ice_cryst(k)  &amp;
      |                         1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Microphys/ice_dfsn_module.F90:287:25:

  207 |     do k = gr%nzt, 1, -1
      |                        2 
......
  287 |           mass_ice_cryst(k-1) = mass_ice_cryst(k)
      |                         1
Warning: Array reference at (1) out of bounds (0 &lt; 1) in loop beginning at (2) [-Wdo-subscript]
[850/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o
[851/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o
[852/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o
[853/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:407:27:

  407 |                  .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
      |                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:406:22:

  406 |             if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &amp;
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:462:22:

  462 |             if ( any( field_rev_rev /= field ) ) then
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:221:27:

  221 |                  .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
      |                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:220:22:

  220 |             if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &amp;
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/G_unit_test_types/fill_holes_tests.F90:275:22:

  275 |             if ( any( field_rev_rev /= field ) ) then
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[854/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o
[855/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o
[856/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o
[857/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[858/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o
[859/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[860/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[861/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[862/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[863/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[864/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o
[865/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[866/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o
[867/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o
[868/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o
[869/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o
[870/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o
[871/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o
[872/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o
[873/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o
[874/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o
[875/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o
[876/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o
[877/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
[878/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o
[879/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o
[880/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o
[881/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o
[882/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/Benchmark_cases/bomex.F90:22:48:

   22 |                           gr, rtm, l_readiopdata, &amp;
      |                                                1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[883/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o
[884/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o
[885/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o
[886/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[887/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[888/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[889/927] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[890/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[891/927] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[892/927] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[893/927] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a
[894/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[895/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[896/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[897/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[898/927] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[899/927] Linking Fortran static library src/Microphys/libmicrophys_lib.a
[900/927] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd
[901/927] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd
[902/927] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[903/927] Linking Fortran executable src/G_unit_tests
[904/927] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[905/927] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_driver.F90:5575:76:

 5575 |                                           p_sfc, rtm_sfc, rtm, l_readiopdata, &amp; !thlm_sfc, &amp;
      |                                                                            1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[906/927] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver.F90:255:28:

  255 |     is_finite_core_value = ( value == value ) .and. ( abs( value ) &lt;= huge( value ) )
      |                            1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[907/927] Linking Fortran static library src/libclubb_driver_lib.a
[908/927] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd
[909/927] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone_loss.dir/Fortran.dd
[910/927] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd
[911/927] Generating Fortran dyndep file src/CMakeFiles/clubb_loss_driver_test.dir/Fortran.dd
[912/927] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd
[913/927] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd
[914/927] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[915/927] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[916/927] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[917/927] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o
[918/927] Linking Fortran executable src/clubb_thread_test
[919/927] Linking Fortran executable src/clubb_standalone
[920/927] Linking Fortran executable src/clubb_driver_test
[921/927] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[922/927] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:273:14:

  273 |     if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:278:14:

  278 |     if ( any( test_correlation /= reference_correlation ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:283:14:

  283 |     if ( any( test_std_ratio /= reference_std_ratio ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:288:14:

  288 |     if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:293:14:

  293 |     if ( any( test_bias_norm /= reference_bias_norm ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:512:14:

  512 |     if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:521:14:

  521 |          any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:520:14:

  520 |          any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. &amp;
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:519:14:

  519 |          any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. &amp;
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:518:14:

  518 |          any( reinit_correlation_1 /= reinit_correlation_2 ) .or. &amp;
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:517:14:

  517 |     if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. &amp;
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:431:14:

  431 |     if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then
      |              1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:371:14:

  371 |          any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:370:14:

  370 |          any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. &amp;
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:369:14:

  369 |          any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. &amp;
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:368:14:

  368 |          any( manual_correlation_2 /= manual_correlation_1 ) .or. &amp;
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/src/clubb_loss_driver_test.F90:367:14:

  367 |     if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. &amp;
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[923/927] Linking Fortran executable src/clubb_standalone_loss
[924/927] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[925/927] Linking Fortran executable src/clubb_loss_driver_test
[926/927] Linking Fortran executable src/clubb_tuner
[926/927] Install the project...
-- Install configuration: "Debug"
-- Installing: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss
-- Set runtime path of "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test
-- Set runtime path of "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/compare_jax_vs_fortran_test_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types

Build completed successfully, and all source code checks passed.
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Jax Python vs Fortran cases">[Pipeline] { (Run Jax Python vs Fortran cases)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ulimit -s 8388608
+ python3 tests/run_jax_vs_fortran_cases.py -j 1
==&gt; No Python 3.11+ found; uv will download Python 3.12
==&gt; Installing uv 0.11.32 in /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/.clubb-jax-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/.clubb-jax-tools/bin
  uv
  uvx
everything's installed!
==&gt; uv is ready: uv 0.11.32 (x86_64-unknown-linux-gnu)
Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB)
 Downloaded cpython-3.12.13-linux-x86_64-gnu (download)
Using CPython 3.12.13
Creating virtual environment at: .venv-jax
Activate with: source .venv-jax/bin/activate
==&gt; Installing JAX 0.11.0 (cpu) and requirements from /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/clubb_jax/requirements.txt
Using Python 3.12.13 environment at: .venv-jax
Resolved 15 packages in 361ms
Downloading cftime (1.6MiB)
Downloading netcdf4 (9.7MiB)
Downloading numpy (15.9MiB)
Downloading pygments (1.2MiB)
Downloading jax (3.1MiB)
Downloading jaxlib (83.2MiB)
Downloading scipy (33.7MiB)
 Downloaded cftime
 Downloaded pygments
 Downloaded netcdf4
 Downloaded jax
 Downloaded numpy
 Downloaded jaxlib
 Downloaded scipy
Prepared 15 packages in 2.37s
Installed 15 packages in 35ms
 + certifi==2026.7.22
 + cftime==1.6.5
 + iniconfig==2.3.0
 + jax==0.11.0
 + jaxlib==0.11.0
 + ml-dtypes==0.6.0
 + netcdf4==1.7.4
 + numpy==2.5.2
 + opt-einsum==3.4.0
 + packaging==26.3
 + pluggy==1.6.0
 + pygments==2.21.0
 + pytest==9.1.1
 + scipy==1.18.1
 + tabulate==0.10.0
JAX environment ready: jax=0.11.0 jaxlib=0.11.0 backend=cpu devices=[CpuDevice(id=0)]
</span>Aborted by <a href='/jenkins/user/ebel' class='jenkins-table__link model-link model-link--float'>Daniel Ebel</a>
<span class="pipeline-node-19">Sending interrupt signal to process
Sending interrupt signal to process
</span>Aborted by <a href='/jenkins/user/ebel' class='jenkins-table__link model-link model-link--float'>Daniel Ebel</a>
<span class="pipeline-node-19">Terminated
script returned exit code 143
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="24" startId="24" enclosingId="23">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="24">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="26" startId="25">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="27" startId="24">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="28" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="29" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="30" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="31" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="32" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="33" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="34" startId="2">[Pipeline] End of Pipeline
</span>org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 2711d1f1-39f7-487a-9e41-8101e2f99b55
Finished: ABORTED