Console Output

+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ulimit -s 8388608
+ python3 tests/run_jax_vs_fortran_cases.py -j 1
==> No Python 3.11+ found; uv will download Python 3.12
==> Installing uv 0.11.32 in /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/.clubb-jax-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/.clubb-jax-tools/bin
  uv
  uvx
everything's installed!
==> uv is ready: uv 0.11.32 (x86_64-unknown-linux-gnu)
Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB)
 Downloaded cpython-3.12.13-linux-x86_64-gnu (download)
Using CPython 3.12.13
Creating virtual environment at: .venv-jax
Activate with: source .venv-jax/bin/activate
==> Installing JAX 0.11.0 (cpu) and requirements from /home/jenkins/workspace/compare_jax_vs_fortran_test_branch/clubb_jax/requirements.txt
Using Python 3.12.13 environment at: .venv-jax
Resolved 15 packages in 361ms
Downloading cftime (1.6MiB)
Downloading netcdf4 (9.7MiB)
Downloading numpy (15.9MiB)
Downloading pygments (1.2MiB)
Downloading jax (3.1MiB)
Downloading jaxlib (83.2MiB)
Downloading scipy (33.7MiB)
 Downloaded cftime
 Downloaded pygments
 Downloaded netcdf4
 Downloaded jax
 Downloaded numpy
 Downloaded jaxlib
 Downloaded scipy
Prepared 15 packages in 2.37s
Installed 15 packages in 35ms
 + certifi==2026.7.22
 + cftime==1.6.5
 + iniconfig==2.3.0
 + jax==0.11.0
 + jaxlib==0.11.0
 + ml-dtypes==0.6.0
 + netcdf4==1.7.4
 + numpy==2.5.2
 + opt-einsum==3.4.0
 + packaging==26.3
 + pluggy==1.6.0
 + pygments==2.21.0
 + pytest==9.1.1
 + scipy==1.18.1
 + tabulate==0.10.0
JAX environment ready: jax=0.11.0 jaxlib=0.11.0 backend=cpu devices=[CpuDevice(id=0)]
Sending interrupt signal to process
Sending interrupt signal to process
Terminated
script returned exit code 143