Started by an SCM change Obtained jenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on mitch in /home/jenkins/workspace/clubb_timestep_gfortran_tests [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_timestep_gfortran_tests # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e (refs/remotes/origin/master) > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8e # timeout=10 Commit message: "Autoupdated clubb's morrison using sam's morrison" > git rev-list --no-walk b2e170923249df969fc5b3c0057edce4c1138e7d # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Found PkgConfig: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/pkgconf-2.2.0-m7jt4djj7ycrz7g6yadslcm2qmulsagd/bin/pkg-config (found version "2.2.0") -- Checking for module 'netcdf-fortran' -- Found netcdf-fortran, version 4.5.3 -- netcdf-fortran found via pkg-config -- Include dirs: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/include;/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-c-4.9.2-xduzp77vg5dgkw7bifjoamebhjhrxhow/include -- Libraries: netcdff -- Derived NetCDFFortran_ROOT = /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_timestep_gfortran_tests/build/gcc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_timestep_gfortran_tests/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_timestep_gfortran_tests/build/gcc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_timestep_gfortran_tests/build/gcc_PRECdouble Running CMake configure... 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Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytrd.f.o [ 30%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/spotrf.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/srscl.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sscal.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtbsv.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmm.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmv.f.o [ 32%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssteqr.f.o [ 32%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssterf.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrsm.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/idamax.f.o [ 33%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sswap.f.o [ 34%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyev.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ieeeck.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlc.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlr.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ilaenv.f.o [ 34%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssymv.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iparmq.f.o [ 35%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyr2.f.o [ 35%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyr2k.f.o [ 35%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssytd2.f.o [ 36%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyrk.f.o [ 36%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssytrd.f.o [ 36%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/stbsv.f.o [ 36%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strmm.f.o [ 37%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strmv.f.o [ 37%] Built target clubb_lapack_double [ 37%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strsm.f.o [ 37%] Built target clubb_lapack_single [ 37%] Linking Fortran static library liblapack_lib.a [ 37%] Built target lapack_lib Scanning dependencies of target clubb_core_lib [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_precision.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameter_indices.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/error_code.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/model_flags.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_interfaces.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/array_index.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/code_timer_module.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/constants_clubb.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_lu_solver.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/tridiag_lu_solver.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/endian.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/endian.F90:167:53: 167 | call mvbits( i_element, 56, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/endian.F90:159:39: 159 | integer(kind=int64) :: i_element_br | ^ note: 'i_element_br' declared here /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/endian.F90:123:53: 123 | CALL MVBITS( i_element, 24, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/endian.F90:117:69: 117 | INTEGER(KIND=int32) :: i_element_br | ^ note: 'i_element_br' declared here [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Skx_module.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/LY93_pdf.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Nc_Ncn_eqns.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/T_in_K_module.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_roots.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/err_info_type_module.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/file_functions.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_bicgstab_solver.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calendar.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/penta_bicgstab_solver.F90:140:10: 140 | if ( norm_rhs == 0.0) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mean_adv.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_operations.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_parameter_module.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_tsdadg_pdf.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sigma_sqd_w_module.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/hydromet_pdf_parameter_module.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diagnose_correlations_module.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/adg1_adg2_3d_luhar_pdf.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/interpolation.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/corr_varnce_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_class.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/index_mapping.F90.o [ 44%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_solver_wrapper.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameters_tunable.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sponge_layer_damping.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pos_definite_module.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/remapping_module.F90:1210:43: 1210 | if(f(i,k+1)*f(i,k-1)<zero .and. df2(i,k)/=zero) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/remapping_module.F90:1104:15: 1104 | if(dm(i) == zero) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/turbulent_adv_pdf.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_pressure.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/remapping_module.F90:185:71: 185 | *( val_below + lin_spline_rho_vals(l) )/2 | ^ Warning: 'level_below' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/remapping_module.F90:129:17: 129 | level_below, & ! The altitude of the level or spline connection point below [m] | ^ note: 'level_below' was declared here /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/remapping_module.F90:185:71: 185 | *( val_below + lin_spline_rho_vals(l) )/2 | ^ Warning: 'val_below' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/remapping_module.F90:128:15: 128 | val_below, & ! The rho value of the level or spline connection point below [kg/m^3] | ^ note: 'val_below' was declared here [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_helper_module.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/parameters_tunable.F90:438:46: 438 | write(fstderr, *) err_info%err_header(i) | ^ Warning: 'i' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/parameters_tunable.F90:407:19: 407 | integer :: k, i ! loop variable | ^ note: 'i' was declared here [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_utilities.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/stats_netcdf.F90:2556:73: 2556 | character(len=REG_LINE_LEN) , dimension(NML_REG_MAX_ENTRIES) :: entry | 1 Warning: Array 'entry' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf_main.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf_main.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/mixing_length.F90:637:16: 637 | if ( abs( dCAPE_dz_j - dCAPE_dz_j_minus_1 ) * 2 <= & | ^ Warning: 'dcape_dz_j' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/mixing_length.F90:271:42: 271 | real( kind = core_rknd ) :: dCAPE_dz_j, dCAPE_dz_j_minus_1, dCAPE_dz_j_plus_1 | ^ note: 'dcape_dz_j' was declared here /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/advance_wp2_wp3_module.F90:1869:12: 1869 | if ( abs(wp2_avg_before - wp2_avg_after) > epsilon(wp2_avg_after)*1000 ) then | ^ Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/CLUBB_core/advance_wp2_wp3_module.F90:1419:20: 1419 | wp2_avg_before, & | ^ note: 'wp2_avg_before' was declared here [ 52%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o [ 52%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o [ 52%] Linking Fortran static library libclubb_core_lib.a [ 52%] Built target clubb_core_lib Scanning dependencies of target microphys_utils_lib Scanning dependencies of target text_writer_lib Scanning dependencies of target bugsrad_lib Scanning dependencies of target coamps_lib [ 52%] Building Fortran object src/CMakeFiles/text_writer_lib.dir/text_writer.F90.o [ 52%] Building Fortran object src/Microphys/Microphys_utils/CMakeFiles/microphys_utils_lib.dir/microphys_stats_vars_module.F90.o [ 52%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/kinds.F90.o [ 52%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjtq.F.o [ 52%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/conice.F.o [ 53%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjmlt.F.o [ 53%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa10g.F.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa11g.F.o [ 54%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_physconst.F90.o [ 55%] Linking Fortran static library libtext_writer_lib.a [ 55%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_planck.F90.o [ 55%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12.F.o [ 55%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa13g.F.o [ 55%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12g.F.o [ 56%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloud_correlate.F90.o [ 56%] Linking Fortran static library libmicrophys_utils_lib.a [ 56%] Built target text_writer_lib [ 56%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa14g.F.o [ 56%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/newexp.F90.o [ 57%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_rad.F.o [ 57%] Built target microphys_utils_lib [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa15.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa17g.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18.F.o [ 58%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloudg.F.o Scanning dependencies of target KK_microphys_lib [ 58%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp1.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18g.F.o [ 58%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic_constants.f90.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19.F.o [ 58%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o Scanning dependencies of target morrison_microphys_lib [ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19g.F.o [ 59%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp2.F.o [ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa20g.F.o [ 60%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/AiryFunction.f90.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21.F.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/rayle.F.o [ 60%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_local_means.F90.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw.F.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21g.F.o [ 61%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_iter.F.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_ocastrndm.F90.o [ 62%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic.f90.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22g.F.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa25.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_sel.F.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa26.F.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_bs.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27r.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa28.F.o [ 64%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa5g.F.o [ 64%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_iter.F.o [ 64%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_ocastrndm.F90.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa6.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7g.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa8g.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9g.F.o [ 66%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gases_ckd.F90.o [ 66%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gascon.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esati.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esat_new.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esatv.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/frzh.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/gamma.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmcol.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqi.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqw.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qsatvi.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qtadj.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/slope.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqg.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqi.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqr.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqs.F.o [ 70%] Linking Fortran static library libcoamps_lib.a [ 70%] Built target coamps_lib [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_utilities.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_covar.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_means.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_all_MM.F90.o [ 72%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_lwr.F.o [ 72%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_swr.F.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_means.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_Nrm_tendencies.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_variances.F90.o [ 73%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o [ 73%] Linking Fortran static library libbugsrad_lib.a [ 73%] Built target bugsrad_lib [ 73%] Linking Fortran static library libKK_microphys_lib.a [ 73%] Built target KK_microphys_lib Scanning dependencies of target silhs_lib [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/parameters_silhs.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/est_kessler_microphys_module.F90.o [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/math_utilities.F90.o [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/generate_uniform_sample_module.F90.o [ 76%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o [ 76%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] [ 76%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/SILHS/latin_hypercube_driver_module.F90:1596:10: 1596 | if ( X_u_chi(sample) < (one - cloud_frac_i) ) then | ^ Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/SILHS/latin_hypercube_driver_module.F90:1578:18: 1578 | cloud_frac_i | ^ note: 'cloud_frac_i' was declared here [ 76%] Linking Fortran static library libmorrison_microphys_lib.a [ 76%] Built target morrison_microphys_lib [ 76%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o [ 76%] Linking Fortran static library libsilhs_lib.a [ 76%] Built target silhs_lib Scanning dependencies of target numerical_recipes_lib Scanning dependencies of target radiation_lib [ 76%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o [ 77%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o [ 77%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o [ 78%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [ 78%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o [ 78%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o [ 78%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [ 78%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o [ 78%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [ 78%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [ 78%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [ 78%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o [ 78%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o [ 79%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Numerical_recipes/ran_state.f90:8:59: 8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1 | 1 Warning: Integer outside symmetric range implied by Standard Fortran at (1) [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [ 80%] Linking Fortran static library libnumerical_recipes_lib.a [ 80%] Built target numerical_recipes_lib [ 81%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [ 81%] Linking Fortran static library libradiation_lib.a [ 81%] Built target radiation_lib Scanning dependencies of target input_fields_lib [ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_grads.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [ 84%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o [ 84%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o [ 84%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:156:13: 156 | p_in_Pa, & ! Pressure [Pa] | 1 Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:151:8: 151 | rt, & ! Total water mixing ratio sounding [kg/kg] | 1 Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:157:10: 157 | subs ! Vertical velocity sounding [m/s or Pa/s] | 1 Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:150:11: 150 | theta, & ! Liquid potential temperature sounding [K] | 1 Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:152:7: 152 | u, & ! u wind sounding [m/s] | 1 Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:154:8: 154 | ug, & ! u geostrophic wind sounding [m/s] | 1 Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:153:7: 153 | v, & ! v wind sounding [m/s] | 1 Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:155:8: 155 | vg, & ! v geostrophic wind sounding [m/s] | 1 Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Input_fields/sounding.F90:149:7: 149 | z, & ! Altitude [m] | 1 Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [ 84%] Linking Fortran static library libinput_fields_lib.a [ 84%] Built target input_fields_lib Scanning dependencies of target benchmark_cases_lib Scanning dependencies of target G_unit_test_lib Scanning dependencies of target microphys_lib [ 85%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [ 85%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [ 86%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o [ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [ 86%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [ 86%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o [ 86%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o [ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o [ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Microphys/cloud_sed_module.F90:166:49: 166 | if ( zt2zm_api( gr, rcm, k ) > zero .AND. zt2zm_api( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function 'redirect_interpolated_azm_k' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/G_unit_test_types/fill_holes_tests.F90:407:27: 407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/G_unit_test_types/fill_holes_tests.F90:406:22: 406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/G_unit_test_types/fill_holes_tests.F90:462:22: 462 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/G_unit_test_types/fill_holes_tests.F90:221:27: 221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/G_unit_test_types/fill_holes_tests.F90:220:22: 220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/G_unit_test_types/fill_holes_tests.F90:275:22: 275 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o [ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o [ 87%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o [ 87%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [ 88%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Microphys/ice_dfsn_module.F90:272:25: 207 | do k = gr%nzt, 1, -1 | 2 ...... 272 | mass_ice_cryst(k-1) = mass_ice_cryst(k) & | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/Microphys/ice_dfsn_module.F90:287:25: 207 | do k = gr%nzt, 1, -1 | 2 ...... 287 | mass_ice_cryst(k-1) = mass_ice_cryst(k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [ 88%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [ 88%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o [ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o [ 89%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/G_unit_test_types/mu_sigma_hm_tests.F90:511:17: 511 | if ( any( .not. l_pass_test_3 ) ) then | ^ Warning: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep_gfortran_tests/src/G_unit_test_types/mu_sigma_hm_tests.F90:137:19: 137 | l_pass_test_3, & ! Flag for passing test 3 | ^ note: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' was declared here [ 90%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o [ 92%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o [ 92%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o [ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o [ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [ 95%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [ 96%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [ 96%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [ 96%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [ 96%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o [ 96%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o [ 96%] Linking Fortran static library libbenchmark_cases_lib.a [ 96%] Built target benchmark_cases_lib [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [ 96%] Linking Fortran static library libG_unit_test_lib.a [ 96%] Built target G_unit_test_lib Scanning dependencies of target G_unit_tests [ 96%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [ 96%] Linking Fortran executable G_unit_tests [ 96%] Built target G_unit_tests [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [ 97%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [ 98%] Linking Fortran static library libmicrophys_lib.a [ 98%] Built target microphys_lib Scanning dependencies of target clubb_driver_lib [ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o [ 99%] Linking Fortran static library libclubb_driver_lib.a [ 99%] Built target clubb_driver_lib Scanning dependencies of target clubb_thread_test Scanning dependencies of target clubb_standalone Scanning dependencies of target clubb_tuner Scanning dependencies of target clubb_driver_test [ 99%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [100%] Linking Fortran executable clubb_thread_test [100%] Linking Fortran executable clubb_standalone [100%] Linking Fortran executable clubb_driver_test [100%] Built target clubb_thread_test [100%] Built target clubb_standalone [100%] Built target clubb_driver_test [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [100%] Linking Fortran executable clubb_tuner [100%] Built target clubb_tuner Install the project... -- Install configuration: "Release" -- Installing: /home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/clubb_tuner -- Set runtime path of "/home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/clubb_tuner" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/G_unit_tests -- Set runtime path of "/home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/G_unit_tests" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/clubb_thread_test -- Set runtime path of "/home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/clubb_thread_test" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/clubb_standalone -- Set runtime path of "/home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/clubb_standalone" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/clubb_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_timestep_gfortran_tests/install/gcc_PRECdouble/clubb_driver_test" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types [92mBuild completed successfully, and all source code checks passed.[0m [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Timesteps Test) [Pipeline] sh + run_scripts/run_timestep_tests.py ---------------- Running arm ---------------- --- PASS up to dt = 3600 ---------------- Running arm_97 ---------------- --- PASS up to dt = 3600 ---------------- Running astex_a209 ---------------- --- PASS up to dt = 3600 ---------------- Running atex ---------------- --- PASS up to dt = 3600 ---------------- Running bomex ---------------- --- PASS up to dt = 3600 ---------------- Running cgils_s6 ---------------- --- PASS up to dt = 3600 ---------------- Running cgils_s11 ---------------- --- PASS up to dt = 3600 ---------------- Running cgils_s12 ---------------- --- PASS up to dt = 3600 ---------------- Running clex9_nov02 ---------------- --- PASS up to dt = 3600 ---------------- Running clex9_oct14 ---------------- --- PASS up to dt = 3600 ---------------- Running dycoms2_rf01 ---------------- --- PASS up to dt = 3600 ---------------- Running dycoms2_rf01_fixed_sst ---------------- --- PASS up to dt = 3600 ---------------- Running dycoms2_rf02_do ---------------- --- PASS up to dt = 3600 ---------------- Running dycoms2_rf02_ds ---------------- --- PASS up to dt = 3600 ---------------- Running dycoms2_rf02_nd ---------------- --- PASS up to dt = 3600 ---------------- Running dycoms2_rf02_so ---------------- --- PASS up to dt = 3600 ---------------- Running fire ---------------- --- PASS up to dt = 3600 ---------------- Running gabls2 ---------------- --- PASS up to dt = 3600 ---------------- Running gabls3 ---------------- ---- FAIL @ dt = 1800 ---------------- Running gabls3_night ---------------- --- PASS up to dt = 3600 ---------------- Running jun25_altocu ---------------- --- PASS up to dt = 3600 ---------------- Running lba ---------------- --- PASS up to dt = 3600 ---------------- Running mc3e ---------------- --- PASS up to dt = 3600 ---------------- Running mpace_a ---------------- --- PASS up to dt = 3600 ---------------- Running mpace_b ---------------- --- PASS up to dt = 3600 ---------------- Running mpace_b_silhs ---------------- --- PASS up to dt = 3600 ---------------- Running nov11_altocu ---------------- --- PASS up to dt = 3600 ---------------- Running rico ---------------- --- PASS up to dt = 3600 ---------------- Running rico_silhs ---------------- --- PASS up to dt = 3600 ---------------- Running twp_ice ---------------- --- PASS up to dt = 3600 ---------------- Running wangara ---------------- --- PASS up to dt = 3600 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS