Started by an SCM change200a6682998e27e3d01b8ffeb4ec2774872e7311aa4a6682998e27e3d01b8ffeb4ec2774872e7311aa4refs/remotes/origin/mastera6682998e27e3d01b8ffeb4ec2774872e7311aa4a6682998e27e3d01b8ffeb4ec2774872e7311aa4refs/remotes/origin/mastera6682998e27e3d01b8ffeb4ec2774872e7311aa4a6682998e27e3d01b8ffeb4ec2774872e7311aa4refs/remotes/origin/masterhttps://github.com/larson-group/clubb.githttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_timestep_gfortran_tests/detail/clubb_timestep_gfortran_tests/200/artifactshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_timestep_gfortran_tests/detail/clubb_timestep_gfortran_tests/200/changeshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_timestep_gfortran_tests/detail/clubb_timestep_gfortran_tests/200/http://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_timestep_gfortran_tests/detail/clubb_timestep_gfortran_tests/200/testsfalsefalse#200842479596301clubb_timestep_gfortran_tests #200200false20021201SUCCESS1677921188616http://carson.math.uwm.edu/jenkins/job/clubb_timestep_gfortran_tests/200/- utilities/autocommit_message_maker/autocommit_message_maker.py965964e81cc6b58ffbf3213af1d2488080b3371a1677867187000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduadded autocommit message maker to clubb so I have an easier time testing it
2023-03-03 12:13:07 -0600965964e81cc6b58ffbf3213af1d2488080b3371aadded autocommit message maker to clubb so I have an easier time testing itaddutilities/autocommit_message_maker/autocommit_message_maker.py
- utilities/autocommit_message_maker/autocommit_message_maker.py6e4204729c1b525b0f2fde3d7c715f5982fc79c31677881620000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.educhanges to integrate message maker into gitUpdate scripts
2023-03-03 16:13:40 -06006e4204729c1b525b0f2fde3d7c715f5982fc79c3changes to integrate message maker into gitUpdate scriptseditutilities/autocommit_message_maker/autocommit_message_maker.py
- utilities/autocommit_message_maker/autocommit_message_maker.pybe6ab481c56acfc66d65990889dba011d6bcd36a1677881884000http://carson.math.uwm.edu/jenkins/user/cerniktcernikttjcernik@uwm.eduOops, I made 1 small error, should be consistent now.
2023-03-03 16:18:04 -0600be6ab481c56acfc66d65990889dba011d6bcd36aOops, I made 1 small error, should be consistent now.editutilities/autocommit_message_maker/autocommit_message_maker.py
- input/case_setups/bomex_model.ininput/case_setups/rico_sounding.ininput/case_setups/dycoms2_rf02_ds_model.ininput/case_setups/rico_silhs_model.ininput/case_setups/rico_model.ininput/case_setups/dycoms2_rf02_do_model.ininput/case_setups/dycoms2_rf02_morr_model.ininput/case_setups/wangara_sounding.ininput/case_setups/dycoms2_rf02_nd_model.insrc/clubb_driver.F90src/sounding.F90input/case_setups/dycoms2_rf02_so_model.ininput/case_setups/dycoms2_rf02_sounding.ininput/case_setups/bomex_sounding.ininput/case_setups/wangara_model.in9aeea149d5970cb99218344f8bde576e1f036d211677883168000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduImplementing changes to the initial conditions.
This commit contains code changes related to the modified initial
conditions for convergence test simulations. These code changes can be
activated by setting l_modify_ic_with_cubic_int = .true. in
the namelist on a case-by-case basis.
Along with this option, the sounding profiles are also modified for
the BOMEX, RICO, DYCOMS2_RF02 and Wangara cases.
-- For BOMEX, RICO, Wangara cases, we add more height levels in the
original sounding profiles so that the cubic spline interpolation
produces consistent profiles with those with linear interpolation
-- For DYCOMS2_RF02, instead of using the formulations in the code to
derive the initial condition profiles (which will results in the
grid-spacing dependent initial condition when we refine grid), we
construct a sounding profiles (still use the same formulas as in
the src/sounding.F90) on a high-resolution grid (refine the standard
grid by a factor of 2^7), then save the profile in
dycoms2_rf02_sounding.in. In this way, the model initiliazation will
always read the same sounding profile for initialization when user
refine the vertical model grid.
Originally committed by Shixuan.
2023-03-03 16:39:28 -06009aeea149d5970cb99218344f8bde576e1f036d21Implementing changes to the initial conditions.editinput/case_setups/rico_model.ineditinput/case_setups/dycoms2_rf02_do_model.ineditinput/case_setups/wangara_sounding.ineditinput/case_setups/bomex_model.ineditinput/case_setups/dycoms2_rf02_ds_model.ineditsrc/sounding.F90editinput/case_setups/rico_silhs_model.ineditinput/case_setups/wangara_model.ineditinput/case_setups/dycoms2_rf02_so_model.ineditinput/case_setups/dycoms2_rf02_sounding.ineditinput/case_setups/bomex_sounding.ineditinput/case_setups/dycoms2_rf02_morr_model.ineditinput/case_setups/dycoms2_rf02_nd_model.ineditsrc/clubb_driver.F90editinput/case_setups/rico_sounding.in
- READMEa6682998e27e3d01b8ffeb4ec2774872e7311aa41677905458000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduThis commit most definitely does not change any bits,
but commit 67878ef was BIT_CHANGING for the DYCOMS-II RF02 family
of cases, RICO (and RICO SILHS), BOMEX, and Wangara.
2023-03-03 22:50:58 -0600a6682998e27e3d01b8ffeb4ec2774872e7311aa4This commit most definitely does not change any bits,editREADME
githttp://carson.math.uwm.edu/jenkins/user/cerniktcerniktcernikthttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2falseStarted by an SCM change20153c717bb7dd9bddcd720cba58c46d77b7ad36c9c53c717bb7dd9bddcd720cba58c46d77b7ad36c9crefs/remotes/origin/master53c717bb7dd9bddcd720cba58c46d77b7ad36c9c53c717bb7dd9bddcd720cba58c46d77b7ad36c9crefs/remotes/origin/master53c717bb7dd9bddcd720cba58c46d77b7ad36c9c53c717bb7dd9bddcd720cba58c46d77b7ad36c9crefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#201841024596301clubb_timestep_gfortran_tests #201201false20121247SUCCESS1678180390192http://carson.math.uwm.edu/jenkins/job/clubb_timestep_gfortran_tests/201/- run_scripts/convergence_function.pyrun_scripts/run_cnvg_test_multi_cases.cshrun_scripts/plot_l2_convergence.pyrun_scripts/convergence_config.py0e087bee28254a2bc2da5869a28352e1374b2b911678120205000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdd scripts to configure and run convergence test
This commit contains new scripts created to configure and run
convergence test simulations. There are four scripts:
1. run_scripts/run_cnvg_test_multi_cases.csh. This script is used to
compile and run convergence simulations with specific configurations
(see details in scripts for explations). After the simulations,the
space-time convergence plots will also be generated.
2.run_scripts/convergence_config.py: this script "called" by the
first script to generate the namelist file for CLUBB-SCM simulations.
With this script, the modified configuration will be applied in the
case run directory, while the files in default clubb will not be
touched
3.run_scripts/convergence_function.py: this script contains function
to modify the initial condition profile for convergence test
simulations. It is called by run_scripts/convergence_config.py
when the model is configured to use modified initial conditions
4.run_scripts/plot_l2_convergence.py: this is a sample script to
generate the space-time convergence plots
Originally committed by Shixuan
2023-03-06 10:30:05 -06000e087bee28254a2bc2da5869a28352e1374b2b91Add scripts to configure and run convergence testaddrun_scripts/convergence_function.pyaddrun_scripts/run_cnvg_test_multi_cases.cshaddrun_scripts/plot_l2_convergence.pyaddrun_scripts/convergence_config.py
- run_scripts/convergence_run/convergence_function.pyrun_scripts/convergence_run/run_cnvg_test_multi_cases.cshrun_scripts/plot_l2_convergence.pyrun_scripts/convergence_run/convergence_config.pyrun_scripts/convergence_config.pyrun_scripts/convergence_function.pyrun_scripts/run_cnvg_test_multi_cases.cshrun_scripts/convergence_run/plot_l2_convergence.py53c717bb7dd9bddcd720cba58c46d77b7ad36c9c1678120475000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.edureorgnize the scripts for convergence test simulations
Move the script associated with convergence test simulation
in the folder of run_scripts/convergence_run
Originally committed by Shixuan
2023-03-06 10:34:35 -060053c717bb7dd9bddcd720cba58c46d77b7ad36c9creorgnize the scripts for convergence test simulationsdeleterun_scripts/convergence_config.pydeleterun_scripts/convergence_function.pydeleterun_scripts/plot_l2_convergence.pyaddrun_scripts/convergence_run/plot_l2_convergence.pydeleterun_scripts/run_cnvg_test_multi_cases.cshaddrun_scripts/convergence_run/convergence_config.pyaddrun_scripts/convergence_run/convergence_function.pyaddrun_scripts/convergence_run/run_cnvg_test_multi_cases.csh
githttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2false202http://carson.math.uwm.edu/jenkins/job/clubb_timestep_gfortran_tests/202/200http://carson.math.uwm.edu/jenkins/job/clubb_timestep_gfortran_tests/200/Started by an SCM change199981b9ba9bc9b5d80edc82f52f502ab9bcce097db981b9ba9bc9b5d80edc82f52f502ab9bcce097dbrefs/remotes/origin/master981b9ba9bc9b5d80edc82f52f502ab9bcce097db981b9ba9bc9b5d80edc82f52f502ab9bcce097dbrefs/remotes/origin/master981b9ba9bc9b5d80edc82f52f502ab9bcce097db981b9ba9bc9b5d80edc82f52f502ab9bcce097dbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#1991814842596301clubb_timestep_gfortran_tests #199199false19921133SUCCESS1677661989984http://carson.math.uwm.edu/jenkins/job/clubb_timestep_gfortran_tests/199/- input_misc/tuner/error_atex.ininput_misc/tuner/error_rico.insrc/CLUBB_core/pdf_closure_module.F90input_misc/tuner/error_gabls3_night.ininput_misc/tuner/error_nov11_altocu.ininput_misc/tuner/error_four_cases.insrc/G_unit_test_types/tuner_tests.F90src/clubb_tuner.F90input_misc/tuner/error_dycoms2_rf02_ds.ininput_misc/tuner/error_dycoms2_rf01.ininput_misc/tuner/error_wangara.ininput_misc/tuner/error_dycoms2_rf02_do.ininput_misc/tuner/error_dycoms2_rf02_nd.ininput_misc/tuner/error_arm.ininput_misc/tuner/error_bomex.ininput_misc/tuner/error_bomex_fire.insrc/enhanced_simann.F90compile/READMEinput_misc/tuner/error_arm_97.ininput_misc/tuner/error_all.ininput_misc/tuner/error_lba.insrc/clubb_driver.F90READMEinput_misc/tuner/READMEinput_misc/tuner/error_fire.insrc/error.F90input_misc/tuner/error_gabls2.incompile/compile.bashinput_misc/tuner/error_ticket_756.in981b9ba9bc9b5d80edc82f52f502ab9bcce097db1677613563000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb ticket #1025: Implemented way to make esa tuner reproducible, h… (#1068)
* Clubb ticket #1025: Implemented way to make esa tuner reproducible, hid error output of optional diagnostic variables behind check, fixed parallelization issue with tuner, esa max_iters parameter is now in stats namelist, fixed issue with TUNER compiler directive, some small fixes.
- New namelist variables prescribed_rand_seed and l_use_prescribed_rand_seed determine if the esa tuner will use a random or a fixed value as random seed. Added descriptions to README.
- Added max_iters to stats namelist to make it more modifiable.
- Renamed stp_adjst_intercept_in and stp_adjst_slope_in to stp_adjst_shift_in and stp_adjst_factor_in, respectively, to better reflect their influence on step size.
- The error output in src/CLUBB_core/pdf_closure_module.F90 for the diagnostic variables wprtp2, wpthlp2, wprtpthlp, and rcp2 is now hidden behind existence checks for these variables. And a clarification was added to "#ifdef TUNER" directive.
- NetCDF file access caused the tuner to crash in parallel mode (-fopenmp flag in config file and multiple cases). Adding an $OMP CRITICAL structure around the call to stats_init in clubb_driver.F90 fixed that.
- Fixed compile/README. Config files are specified with the -c option.
- The -t option in run_scripts/run_tuner.bash interfered with the previous usage of the TUNER compiler directive. Renamed the old TUNER directive to NR_SP, a short for "numerical recipes, single precision". TUNER now is the option to "turn on" code changes required to run the tuner.
2023-02-28 13:46:03 -0600981b9ba9bc9b5d80edc82f52f502ab9bcce097dbClubb ticket #1025: Implemented way to make esa tuner reproducible, h… (#1068)editinput_misc/tuner/error_gabls3_night.inaddinput_misc/tuner/error_bomex_fire.ineditsrc/CLUBB_core/pdf_closure_module.F90editinput_misc/tuner/error_atex.ineditinput_misc/tuner/error_four_cases.ineditcompile/compile.basheditinput_misc/tuner/error_fire.ineditsrc/clubb_tuner.F90editinput_misc/tuner/error_arm.ineditinput_misc/tuner/error_gabls2.ineditinput_misc/tuner/error_dycoms2_rf02_nd.ineditcompile/READMEeditinput_misc/tuner/error_rico.ineditinput_misc/tuner/error_dycoms2_rf02_do.ineditinput_misc/tuner/error_dycoms2_rf02_ds.ineditinput_misc/tuner/READMEeditinput_misc/tuner/error_bomex.ineditinput_misc/tuner/error_arm_97.ineditsrc/error.F90editinput_misc/tuner/error_dycoms2_rf01.ineditinput_misc/tuner/error_lba.ineditinput_misc/tuner/error_all.ineditinput_misc/tuner/error_nov11_altocu.ineditinput_misc/tuner/error_wangara.ineditinput_misc/tuner/error_ticket_756.ineditsrc/clubb_driver.F90editsrc/enhanced_simann.F90editsrc/G_unit_test_types/tuner_tests.F90editREADME
githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse200http://carson.math.uwm.edu/jenkins/job/clubb_timestep_gfortran_tests/200/198http://carson.math.uwm.edu/jenkins/job/clubb_timestep_gfortran_tests/198/