Started by an SCM change Obtained jenkins_tests/clubb_timestep/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] stage [Pipeline] { (Independent workflows) [Pipeline] parallel [Pipeline] { (Branch: JAX timestep sweep) [Pipeline] { (Branch: Fortran timestep sweep) [Pipeline] { (Branch: Fortran timestep convergence) [Pipeline] stage [Pipeline] { (JAX timestep sweep) [Pipeline] stage [Pipeline] { (Fortran timestep sweep) [Pipeline] stage [Pipeline] { (Fortran timestep convergence) [Pipeline] node [Pipeline] node [Pipeline] node Still waiting to schedule task Waiting for next available executor on ‘Jenkins’ Still waiting to schedule task Waiting for next available executor Still waiting to schedule task Waiting for next available executor Running on nelson in /home/jenkins/workspace/clubb_timestep [Pipeline] { [Pipeline] checkout The recommended git tool is: git DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead. Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_timestep # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 8369512fcc6487603491e12ac13376de2aec2a0b (refs/remotes/origin/master) Commit message: "Clubb params 1d to 2d fix (#1392)" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 8369512fcc6487603491e12ac13376de2aec2a0b # timeout=10 > git rev-list --no-walk ec5e8070d3173282a6317b067f8673a657a1eb6f # timeout=10 [Pipeline] withEnv [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ . /opt/lmod//lmod/lmod/init/profile +++ '[' -z '' ']' +++ LMOD_ALLOW_ROOT_USE=yes +++ '[' -n '' ']' +++ '[' yes '!=' yes ']' +++ '[' -z '' ']' +++ export MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles +++ MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles +++ export USER=jenkins +++ USER=jenkins ++++ uname +++ export LMOD_sys=Linux +++ LMOD_sys=Linux +++ '[' -z '' ']' +++ '[' -f /etc/lmod/.modulespath ']' +++ LMOD_MODULEPATH_INIT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath +++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath ']' ++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core +++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core +++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core ++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core +++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core +++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core +++ '[' -n '' ']' +++ export BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash +++ BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash +++ '[' -z '' ']' +++ export MANPATH=: +++ MANPATH=: ++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto MANPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man +++ export MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man: +++ MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man: +++ findExec READLINK_CMD /usr/bin/readlink readlink +++ Nm=READLINK_CMD +++ confPath=/usr/bin/readlink +++ execNm=readlink +++ eval READLINK_CMD=/usr/bin/readlink ++++ READLINK_CMD=/usr/bin/readlink +++ '[' '!' -x /usr/bin/readlink ']' +++ unset Nm confPath execNm +++ findExec PS_CMD /usr/bin/ps ps +++ Nm=PS_CMD +++ confPath=/usr/bin/ps +++ execNm=ps +++ eval PS_CMD=/usr/bin/ps ++++ PS_CMD=/usr/bin/ps +++ '[' '!' -x /usr/bin/ps ']' +++ unset Nm confPath execNm +++ findExec EXPR_CMD /usr/bin/expr expr +++ Nm=EXPR_CMD +++ confPath=/usr/bin/expr +++ execNm=expr +++ eval EXPR_CMD=/usr/bin/expr ++++ EXPR_CMD=/usr/bin/expr +++ '[' '!' -x /usr/bin/expr ']' +++ unset Nm confPath execNm +++ findExec BASENAME_CMD /usr/bin/basename basename +++ Nm=BASENAME_CMD +++ confPath=/usr/bin/basename +++ execNm=basename +++ eval BASENAME_CMD=/usr/bin/basename ++++ BASENAME_CMD=/usr/bin/basename +++ '[' '!' -x /usr/bin/basename ']' +++ unset Nm confPath execNm +++ unset -f findExec +++ '[' -f /proc/641617/exe ']' ++++ /usr/bin/readlink /proc/641617/exe +++ my_shell=/usr/bin/bash ++++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' +++ my_shell=/usr/bin/bash ++++ /usr/bin/basename /usr/bin/bash +++ my_shell=bash +++ case ${my_shell} in +++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash ']' +++ . /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash ++++ '[' -z '' ']' ++++ case "$-" in ++++ __lmod_vx=x ++++ '[' -n x ']' ++++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted ++++ unset __lmod_vx +++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/include -- Configuring done (1.0s) -- Generating done (0.1s) -- Build files have been written to: /home/jenkins/workspace/clubb_timestep/build/gcc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_timestep/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_timestep/build/gcc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_timestep/build/gcc_PRECdouble Running CMake configure... [ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/xerbla.f.o [ 0%] Building Fortran object src/Microphys/SCM_Activation/CMakeFiles/scm_activation_lib.dir/aer_ccn_act_k.F90.o [ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/lsame.f.o [ 0%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslc.f.o [ 0%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslr.f.o [ 0%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sasum.f.o [ 1%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/isamax.f.o [ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dasum.f.o [ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/daxpy.f.o [ 2%] Built target clubb_lapack_shared [ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dcopy.f.o [ 2%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/scopy.f.o [ 2%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/saxpy.f.o [ 2%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sdot.f.o [ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbcon.f.o [ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ddot.f.o [ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbcon.f.o [ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbequ.f.o [ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbmv.f.o [ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbrfs.f.o [ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbsv.f.o [ 5%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbequ.f.o [ 5%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbmv.f.o [ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbsvx.f.o [ 5%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbrfs.f.o [ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtf2.f.o [ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtrf.f.o [ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtrs.f.o [ 5%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsv.f.o [ 6%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgemm.f.o [ 6%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsvx.f.o [ 6%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgemv.f.o [ 7%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtf2.f.o [ 7%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrf.f.o [ 7%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sger.f.o [ 7%] Linking Fortran static library libscm_activation_lib.a [ 7%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtcon.f.o [ 7%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrs.f.o [ 8%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtrfs.f.o [ 8%] Built target scm_activation_lib [ 8%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtsv.f.o [ 8%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgemm.f.o [ 8%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtsvx.f.o [ 9%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgemv.f.o [ 9%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgttrf.f.o [ 9%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dger.f.o [ 9%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgttrs.f.o [ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtts2.f.o [ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sisnan.f.o [ 10%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtcon.f.o [ 10%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtsv.f.o [ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slabad.f.o [ 10%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtrfs.f.o [ 11%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtsvx.f.o [ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slacn2.f.o [ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slacpy.f.o [ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaev2.f.o [ 12%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slae2.f.o [ 12%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slagtm.f.o [ 12%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgttrf.f.o [ 12%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaisnan.f.o [ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slamch.f.o [ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slangb.f.o [ 13%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgttrs.f.o [ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slangt.f.o [ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slanst.f.o [ 13%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtts2.f.o [ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slansy.f.o [ 14%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slantb.f.o [ 14%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/disnan.f.o [ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlabad.f.o [ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlacn2.f.o [ 15%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slapy2.f.o [ 15%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaqgb.f.o [ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlacpy.f.o [ 15%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaqsy.f.o [ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlae2.f.o [ 16%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slarf.f.o [ 16%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slarfb.f.o [ 16%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slarfg.f.o [ 17%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaev2.f.o [ 17%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slarft.f.o [ 17%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlagtm.f.o [ 17%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slartg.f.o [ 17%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaisnan.f.o [ 18%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slascl.f.o [ 18%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlamch.f.o [ 18%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlangb.f.o [ 19%] Building Fortran object 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Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slatbs.f.o [ 21%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slatrd.f.o [ 21%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/snrm2.f.o [ 21%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqgb.f.o [ 21%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorg2r.f.o [ 22%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorg2l.f.o [ 22%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorgql.f.o [ 22%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorgqr.f.o [ 22%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqsy.f.o [ 22%] Building Fortran object 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Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sscal.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssteqr.f.o [ 25%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlascl.f.o [ 25%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaset.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssterf.f.o [ 26%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlasr.f.o [ 26%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlasrt.f.o [ 26%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sswap.f.o [ 26%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyev.f.o [ 26%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlassq.f.o [ 27%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssymv.f.o [ 27%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaswp.f.o [ 28%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlatbs.f.o [ 28%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dnrm2.f.o [ 28%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlatrd.f.o [ 28%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorg2l.f.o [ 28%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorg2r.f.o [ 28%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyr2.f.o [ 28%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyr2k.f.o [ 29%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgql.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyrk.f.o [ 29%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgqr.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssytd2.f.o [ 29%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgtr.f.o [ 29%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpoequ.f.o [ 29%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpotrf.f.o [ 30%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpotrf2.f.o [ 30%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/drscl.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssytrd.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strmm.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/stbsv.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dscal.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strmv.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsteqr.f.o [ 32%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strsm.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsterf.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dswap.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyev.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsymv.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyr2.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyr2k.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyrk.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytd2.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytrd.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtbsv.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmm.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmv.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrsm.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/idamax.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlc.f.o [ 36%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ieeeck.f.o [ 36%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlr.f.o [ 36%] Built target clubb_lapack_single [ 36%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ilaenv.f.o [ 37%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iparmq.f.o [ 37%] Built target clubb_lapack_double [ 38%] Linking Fortran static library liblapack_lib.a [ 38%] Built target lapack_lib [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/model_flags.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/error_code.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_precision.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_interfaces.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameter_indices.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/array_index.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/tridiag_lu_solver.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/constants_clubb.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_lu_solver.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/endian.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/endian.F90:167:53: 167 | call mvbits( i_element, 56, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/endian.F90:159:39: 159 | integer(kind=int64) :: i_element_br | ^ note: 'i_element_br' declared here /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/endian.F90:123:53: 123 | CALL MVBITS( i_element, 24, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/endian.F90:117:69: 117 | INTEGER(KIND=int32) :: i_element_br | ^ note: 'i_element_br' declared here [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Nc_Ncn_eqns.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/LY93_pdf.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/T_in_K_module.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_roots.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/err_info_type_module.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/file_functions.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calendar.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_bicgstab_solver.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mean_adv.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_parameter_module.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/penta_bicgstab_solver.F90:140:10: 140 | if ( norm_rhs == 0.0) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/hydromet_pdf_parameter_module.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_tsdadg_pdf.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diagnose_correlations_module.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/code_timer_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/interpolation.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_operations.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Skx_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/adg1_adg2_3d_luhar_pdf.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_class.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/corr_varnce_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/index_mapping.F90.o [ 44%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_solver_wrapper.F90.o [ 44%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o [ 45%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameters_tunable.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sponge_layer_damping.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pos_definite_module.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/turbulent_adv_pdf.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/remapping_module.F90:1212:43: 1212 | if(f(i,k+1)*f(i,k-1) git init /home/jenkins/workspace/clubb_timestep # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 | ^ Warning: 'val_below' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/remapping_module.F90:128:15: 128 | val_below, & ! The rho value of the level or spline connection point below [kg/m^3] | ^ note: 'val_below' was declared here [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf_main.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf_main.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_helper_module.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_utilities.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/advance_windm_edsclrm_module.F90:322:70: 322 | if ( edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) /= zero .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/advance_windm_edsclrm_module.F90:322:14: 322 | if ( edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) /= zero .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/advance_windm_edsclrm_module.F90:343:71: 343 | if ( wpedsclrp(i,gr%k_lb_zm,sclr_idx%iiedsclr_thl) /= zero .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/advance_windm_edsclrm_module.F90:343:12: 343 | if ( wpedsclrp(i,gr%k_lb_zm,sclr_idx%iiedsclr_thl) /= zero .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/mixing_length.F90:1096:16: 1096 | if ( abs( dCAPE_dz_j - dCAPE_dz_j_minus_1 ) * 2 <= & | ^ Warning: 'dcape_dz_j' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/mixing_length.F90:730:42: 730 | real( kind = core_rknd ) :: dCAPE_dz_j, dCAPE_dz_j_minus_1, dCAPE_dz_j_plus_1 | ^ note: 'dcape_dz_j' was declared here [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o [ 52%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/advance_wp2_wp3_module.F90:1927:12: 1927 | if ( abs(wp2_avg_before - wp2_avg_after) > epsilon(wp2_avg_after)*1000 ) then | ^ Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/advance_wp2_wp3_module.F90:1470:20: 1470 | wp2_avg_before, & | ^ note: 'wp2_avg_before' was declared here [ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o [ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o [ 53%] Linking Fortran static library libclubb_core_lib.a [ 53%] Built target clubb_core_lib [ 53%] Building Fortran object src/CMakeFiles/text_writer_lib.dir/text_writer.F90.o [ 53%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [ 53%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic_constants.f90.o [ 53%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o [ 53%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/kinds.F90.o [ 53%] 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71%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqi.F.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_all_MM.F90.o [ 71%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqr.F.o [ 71%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqs.F.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_means.F90.o [ 71%] Linking Fortran static library libcoamps_lib.a [ 71%] Built target coamps_lib [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_Nrm_tendencies.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_variances.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o [ 72%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_lwr.F.o [ 72%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_swr.F.o [ 72%] Linking Fortran static library libKK_microphys_lib.a [ 72%] Built target KK_microphys_lib [ 72%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/est_kessler_microphys_module.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/parameters_silhs.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o [ 74%] Linking Fortran static library libbugsrad_lib.a [ 74%] Built target bugsrad_lib [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/math_utilities.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/generate_uniform_sample_module.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o /home/jenkins/workspace/clubb_timestep/src/SILHS/silhs_importance_sample_module.F90:642:62: 637 | do category=1, num_importance_categories | 2 ...... 642 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o [ 75%] Linking Fortran static library libmorrison_microphys_lib.a [ 75%] Built target morrison_microphys_lib /home/jenkins/workspace/clubb_timestep/src/SILHS/latin_hypercube_driver_module.F90:1638:10: 1638 | if ( X_u_chi(sample) < (one - cloud_frac_i) ) then | ^ Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/SILHS/latin_hypercube_driver_module.F90:1620:18: 1620 | cloud_frac_i | ^ note: 'cloud_frac_i' was declared here [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o [ 75%] Linking Fortran static library libsilhs_lib.a [ 75%] Built target silhs_lib [ 75%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o [ 76%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [ 76%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o [ 77%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o [ 76%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [ 77%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o [ 78%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [ 79%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o /home/jenkins/workspace/clubb_timestep/src/Numerical_recipes/ran_state.f90:8:59: 8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1 | 1 Warning: Integer outside symmetric range implied by Standard Fortran at (1) [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [ 80%] Linking Fortran static library libnumerical_recipes_lib.a [ 80%] Built target numerical_recipes_lib [ 80%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [ 80%] Linking Fortran static library libradiation_lib.a [ 80%] Built target radiation_lib [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1470:21: 1470 | if( (bmnth>2).and. isLeapYear(byear) ) jday = jday + 1 | 1 Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1492:18: 1492 | if(i==2.and.isLeapYear(iyear)) days_this_month = days_this_month + 1 | 1 Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1038:15: 1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1040:15: 1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1042:15: 1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1045:15: 1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1047:15: 1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1049:15: 1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:356:13: 356 | if( ANY(Ts_in == 0.0) ) then | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:620:12: 620 | if(T_in(i,nlev+1)/=missing_value) then | 1 Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:636:12: 636 | if(T_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:638:12: 638 | if(q_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:640:12: 640 | if(u_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:642:12: 642 | if(v_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:647:15: 647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:651:15: 651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:658:12: 658 | if(ug_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:660:12: 660 | if(vg_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1252:42: 1252 | character dim_name*( NF90_MAX_NAME ) | 1 Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1254:33: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1254:43: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1254:46: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1237:60: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1237:54: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1238:23: 1238 | var, use_NF90_REAL, status, required) | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1167:67: 1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, & | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:751:51: 751 | get_add_surface_data, ntime, & | 1 Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:750:81: 750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, & | 1 Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:290:32: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:290:38: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:291:19: 291 | integer :: varID, NCID | 1 Warning: Unused variable 'varid' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/Input_fields/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o [ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o [ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:788:31: 788 | tausrf_in(:) = missing_value | ^ Warning: 'tausrf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:59: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'tausrf_in.dim[0].ubound' was declared here [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:260:16: 260 | integer :: k | 1 Warning: Unused variable 'k' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:264:17: 264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s] | 1 Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:243:31: 243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing ) | 1 Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:285:47: 285 | thlm_forcing(1:nlevels) = dtls(1:nlevels,1) | ^ Warning: 'nlevels' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:258:22: 258 | integer :: nlevels | ^ note: 'nlevels' was declared here [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:57:8: 57 | use input_names, only: & | 1 Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:165:13: 165 | p_in_Pa, & ! Pressure [Pa] | 1 Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:160:8: 160 | rt, & ! Total water mixing ratio sounding [kg/kg] | 1 Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:166:10: 166 | subs ! Vertical velocity sounding [m/s or Pa/s] | 1 Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:159:11: 159 | theta, & ! Liquid potential temperature sounding [K] | 1 Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:161:7: 161 | u, & ! u wind sounding [m/s] | 1 Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:163:8: 163 | ug, & ! u geostrophic wind sounding [m/s] | 1 Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:162:7: 162 | v, & ! v wind sounding [m/s] | 1 Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:164:8: 164 | vg, & ! v geostrophic wind sounding [m/s] | 1 Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:158:7: 158 | z, & ! Altitude [m] | 1 Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [ 83%] Linking Fortran static library libinput_fields_lib.a [ 83%] Built target input_fields_lib [ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/cubic_solve_tests.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/cubic_solve_tests.F90:179:16: 179 | if ( any( aimag( roots_cmp(k,:) ) /= zero ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:407:27: 407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:406:22: 406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:462:22: 462 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:221:27: 221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:220:22: 220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:275:22: 275 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o /home/jenkins/workspace/clubb_timestep/src/Microphys/ice_dfsn_module.F90:282:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_timestep/src/Microphys/ice_dfsn_module.F90:296:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o [ 85%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [ 86%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [ 87%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o [ 88%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [ 89%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [ 90%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o [ 91%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/mu_sigma_hm_tests.F90:511:17: 511 | if ( any( .not. l_pass_test_3 ) ) then | ^ Warning: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/mu_sigma_hm_tests.F90:137:19: 137 | l_pass_test_3, & ! Flag for passing test 3 | ^ note: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' was declared here [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [ 92%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o Avoid second fetch Checking out Revision 8369512fcc6487603491e12ac13376de2aec2a0b (refs/remotes/origin/master) Commit message: "Clubb params 1d to 2d fix (#1392)" [Pipeline] withEnv [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-rhucvef, netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-rhucvef, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 8369512fcc6487603491e12ac13376de2aec2a0b # timeout=10 Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/include -- Configuring done (3.9s) -- Generating done (0.2s) -- Build files have been written to: /home/jenkins/workspace/clubb_timestep/build/gcc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_timestep/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_timestep/build/gcc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_timestep/build/gcc_PRECdouble Running CMake configure... [ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/lsame.f.o [ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/xerbla.f.o [ 0%] Building Fortran object src/Microphys/SCM_Activation/CMakeFiles/scm_activation_lib.dir/aer_ccn_act_k.F90.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dasum.f.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/daxpy.f.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dcopy.f.o [ 1%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslc.f.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ddot.f.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbcon.f.o [ 1%] Built target clubb_lapack_shared [ 1%] Building Fortran object 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Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slatrd.f.o [ 21%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlapy2.f.o [ 21%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/snrm2.f.o [ 22%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorg2l.f.o [ 22%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqgb.f.o [ 22%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorg2r.f.o [ 22%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqsy.f.o [ 22%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorgql.f.o [ 22%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorgqr.f.o [ 22%] Building Fortran object 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Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sscal.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssteqr.f.o [ 25%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlascl.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssterf.f.o [ 25%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaset.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sswap.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyev.f.o [ 26%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlasr.f.o [ 26%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlasrt.f.o [ 26%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaswp.f.o [ 26%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlassq.f.o [ 26%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyr2.f.o [ 27%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssymv.f.o [ 27%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyr2k.f.o [ 27%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyrk.f.o [ 27%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssytd2.f.o [ 28%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlatbs.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssytrd.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/stbsv.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strmm.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strmv.f.o [ 30%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strsm.f.o [ 30%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlatrd.f.o [ 30%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dnrm2.f.o [ 30%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorg2l.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgql.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorg2r.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgqr.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorgtr.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpoequ.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpotrf2.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dpotrf.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/drscl.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dscal.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsterf.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsteqr.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dswap.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyev.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsymv.f.o [ 33%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyr2.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyr2k.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyrk.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytd2.f.o [ 34%] Built target clubb_lapack_single [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytrd.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtbsv.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmm.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmv.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrsm.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/idamax.f.o [ 36%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ieeeck.f.o [ 36%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlc.f.o [ 36%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlr.f.o [ 36%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ilaenv.f.o [ 37%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iparmq.f.o [ 37%] Built target clubb_lapack_double [ 38%] Linking Fortran static library liblapack_lib.a [ 38%] Built target lapack_lib [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_precision.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/model_flags.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameter_indices.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/error_code.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/array_index.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_interfaces.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_lu_solver.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/constants_clubb.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/tridiag_lu_solver.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/endian.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/endian.F90:167:53: 167 | call mvbits( i_element, 56, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/endian.F90:159:39: 159 | integer(kind=int64) :: i_element_br | ^ note: 'i_element_br' declared here /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/endian.F90:123:53: 123 | CALL MVBITS( i_element, 24, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/endian.F90:117:69: 117 | INTEGER(KIND=int32) :: i_element_br | ^ note: 'i_element_br' declared here [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/LY93_pdf.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Nc_Ncn_eqns.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/T_in_K_module.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_roots.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/err_info_type_module.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/file_functions.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calendar.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_bicgstab_solver.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/penta_bicgstab_solver.F90:140:10: 140 | if ( norm_rhs == 0.0) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mean_adv.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_parameter_module.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_tsdadg_pdf.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/hydromet_pdf_parameter_module.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diagnose_correlations_module.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/code_timer_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/interpolation.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_operations.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Skx_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/adg1_adg2_3d_luhar_pdf.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_class.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/corr_varnce_module.F90.o [ 44%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_solver_wrapper.F90.o [ 44%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/index_mapping.F90.o [ 45%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pos_definite_module.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/turbulent_adv_pdf.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameters_tunable.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sponge_layer_damping.F90.o /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/remapping_module.F90:1212:43: 1212 | if(f(i,k+1)*f(i,k-1) epsilon(wp2_avg_after)*1000 ) then | ^ Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/CLUBB_core/advance_wp2_wp3_module.F90:1470:20: 1470 | wp2_avg_before, & | ^ note: 'wp2_avg_before' was declared here [ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o [ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o [ 53%] Linking Fortran static library libclubb_core_lib.a [ 53%] Built target clubb_core_lib [ 53%] Building Fortran object src/CMakeFiles/text_writer_lib.dir/text_writer.F90.o [ 53%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/kinds.F90.o [ 53%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [ 53%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjmlt.F.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/conice.F.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjtq.F.o [ 54%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic_constants.f90.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa10g.F.o [ 54%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o [ 54%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_physconst.F90.o [ 55%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloud_correlate.F90.o [ 54%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_planck.F90.o [ 56%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/AiryFunction.f90.o [ 57%] Linking Fortran static library libtext_writer_lib.a [ 57%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa11g.F.o [ 57%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_local_means.F90.o [ 57%] Built target text_writer_lib [ 57%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12.F.o [ 57%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12g.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa13g.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa14g.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa15.F.o [ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_rad.F.o [ 58%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/newexp.F90.o [ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa17g.F.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18.F.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18g.F.o [ 60%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic.f90.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloudg.F.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp1.F.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19.F.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19g.F.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa20g.F.o ---------------- Running atex ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running gabls2 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running bomex ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running astex_a209 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp2.F.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/rayle.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21g.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22g.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_iter.F.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa25.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_ocastrndm.F90.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_sel.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_bs.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa26.F.o [ 64%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27r.F.o [ 64%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_iter.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa28.F.o [ 64%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_ocastrndm.F90.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa5g.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa6.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7.F.o [ 65%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gascon.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7g.F.o [ 66%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gases_ckd.F90.o [ 66%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa8g.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9g.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esati.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esat_new.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esatv.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/frzh.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/gamma.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmcol.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqi.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqw.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qsatvi.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qtadj.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/slope.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqg.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqi.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqr.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqs.F.o [ 70%] Linking Fortran static library libcoamps_lib.a [ 70%] Built target coamps_lib [ 70%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_utilities.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_covar.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_means.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_all_MM.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_means.F90.o [ 71%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_lwr.F.o [ 71%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_swr.F.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_Nrm_tendencies.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_variances.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o [ 72%] Linking Fortran static library libbugsrad_lib.a [ 72%] Built target bugsrad_lib [ 72%] Linking Fortran static library libKK_microphys_lib.a [ 72%] Built target KK_microphys_lib [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/est_kessler_microphys_module.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/parameters_silhs.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/generate_uniform_sample_module.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/math_utilities.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o /home/jenkins/workspace/clubb_timestep/src/SILHS/silhs_importance_sample_module.F90:642:62: 637 | do category=1, num_importance_categories | 2 ...... 642 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o [ 75%] Linking Fortran static library libmorrison_microphys_lib.a [ 75%] Built target morrison_microphys_lib /home/jenkins/workspace/clubb_timestep/src/SILHS/latin_hypercube_driver_module.F90:1638:10: 1638 | if ( X_u_chi(sample) < (one - cloud_frac_i) ) then | ^ Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/SILHS/latin_hypercube_driver_module.F90:1620:18: 1620 | cloud_frac_i | ^ note: 'cloud_frac_i' was declared here [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o [ 75%] Linking Fortran static library libsilhs_lib.a [ 75%] Built target silhs_lib [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o [ 75%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o ---------------- Running cgils_s12 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running cgils_s11 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running clex9_nov02 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf01 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf01_fixed_sst ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf02_nd ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf02_so ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running fire ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running gabls3_night ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running cgils_s6 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running jun25_altocu ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running gabls3 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 /home/jenkins/workspace/clubb_timestep/output/gabls3.in Output directory: /home/jenkins/workspace/clubb_timestep/output =================== Running gabls3 =================== - using install dir (selected): /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble - using executable: /home/jenkins/workspace/clubb_timestep/install/selected/clubb_standalone iteration: 1 / 48 -- time = 45000.0s / 129600.0s iteration: 2 / 48 -- time = 46800.0s / 129600.0s iteration: 3 / 48 -- time = 48600.0s / 129600.0s iteration: 4 / 48 -- time = 50400.0s / 129600.0s iteration: 5 / 48 -- time = 52200.0s / 129600.0s iteration: 6 / 48 -- time = 54000.0s / 129600.0s iteration: 7 / 48 -- time = 55800.0s / 129600.0s iteration: 8 / 48 -- time = 57600.0s / 129600.0s iteration: 9 / 48 -- time = 59400.0s / 129600.0s iteration: 10 / 48 -- time = 61200.0s / 129600.0s iteration: 11 / 48 -- time = 63000.0s / 129600.0s iteration: 12 / 48 -- time = 64800.0s / 129600.0s iteration: 13 / 48 -- time = 66600.0s / 129600.0s iteration: 14 / 48 -- time = 68400.0s / 129600.0s iteration: 15 / 48 -- time = 70200.0s / 129600.0s iteration: 16 / 48 -- time = 72000.0s / 129600.0s iteration: 17 / 48 -- time = 73800.0s / 129600.0s iteration: 18 / 48 -- time = 75600.0s / 129600.0s iteration: 19 / 48 -- time = 77400.0s / 129600.0s iteration: 20 / 48 -- time = 79200.0s / 129600.0s iteration: 21 / 48 -- time = 81000.0s / 129600.0s iteration: 22 / 48 -- time = 82800.0s / 129600.0s iteration: 23 / 48 -- time = 84600.0s / 129600.0s iteration: 24 / 48 -- time = 86400.0s / 129600.0s iteration: 25 / 48 -- time = 88200.0s / 129600.0s xm_adj_coef in mfl less than -0.99, mx_adj_coef set to -0.99 iteration: 26 / 48 -- time = 90000.0s / 129600.0s Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 4 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 5 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 7 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 9 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 10 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 19 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 21 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 22 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 23 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 24 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 25 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 27 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 28 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 34 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 35 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 37 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 39 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 40 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 87 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 88 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 89 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 90 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 91 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 93 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 94 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 117 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 118 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 120 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 121 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 122 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 144 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 145 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 146 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 147 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 149 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 150 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 151 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 154 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 155 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 157 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 159 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 160 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 161 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 163 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 169 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 178 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 184 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 185 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 186 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 187 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 189 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 190 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 192 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 193 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 195 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 196 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 197 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 198 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 219 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 220 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 221 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 222 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 223 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 225 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 244 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 245 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 247 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 248 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees thlm < 0 in Before BUGSrad. at i = 1 and k = 249 Frad after BUGSrad is NaN radht after BUGSrad is NaN Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees Fatal error in radiation_driver: Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees Fatal error in radiation, check your parameter values and timestep Writing timing results to: /home/jenkins/workspace/clubb_timestep/output/gabls3.timing Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG IEEE_UNDERFLOW_FLAG IEEE_DENORMAL ERROR STOP Fatal error in clubb, check your parameter values and timestep Error termination. Backtrace: #0 0x4038e0 in ??? #1 0x403af7 in ??? #2 0x40375e in ??? #3 0x7ec03ce2a1c9 in __libc_start_call_main at ../sysdeps/nptl/libc_start_call_main.h:58 #4 0x7ec03ce2a28a in __libc_start_main_impl at ../csu/libc-start.c:360 #5 0x403784 in ??? #6 0xffffffffffffffff in ??? CLUBB runner exited with status 1 -------------------------------------------------- run_scm.py total runtime: 0.48 s -------------------------------------------------- ---- FAIL @ dt = 1800 ---------------- Running mpace_b ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running mpace_b_silhs ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running mpace_a ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running wangara ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running arm_97 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 [ 75%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o [ 76%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [ 78%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [ 78%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o [ 79%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o [ 79%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o /home/jenkins/workspace/clubb_timestep/src/Numerical_recipes/ran_state.f90:8:59: 8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1 | 1 Warning: Integer outside symmetric range implied by Standard Fortran at (1) [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [ 80%] Linking Fortran static library libnumerical_recipes_lib.a [ 80%] Built target numerical_recipes_lib [ 80%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [ 80%] Linking Fortran static library libradiation_lib.a [ 80%] Built target radiation_lib [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1470:21: 1470 | if( (bmnth>2).and. isLeapYear(byear) ) jday = jday + 1 | 1 Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1492:18: 1492 | if(i==2.and.isLeapYear(iyear)) days_this_month = days_this_month + 1 | 1 Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1038:15: 1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1040:15: 1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1042:15: 1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1045:15: 1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1047:15: 1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1049:15: 1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:356:13: 356 | if( ANY(Ts_in == 0.0) ) then | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:620:12: 620 | if(T_in(i,nlev+1)/=missing_value) then | 1 Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:636:12: 636 | if(T_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:638:12: 638 | if(q_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:640:12: 640 | if(u_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:642:12: 642 | if(v_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:647:15: 647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:651:15: 651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:658:12: 658 | if(ug_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:660:12: 660 | if(vg_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1252:42: 1252 | character dim_name*( NF90_MAX_NAME ) | 1 Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1254:33: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1254:43: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1254:46: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1237:60: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1237:54: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1238:23: 1238 | var, use_NF90_REAL, status, required) | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:1167:67: 1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, & | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:751:51: 751 | get_add_surface_data, ntime, & | 1 Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:750:81: 750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, & | 1 Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:290:32: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:290:38: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:291:19: 291 | integer :: varID, NCID | 1 Warning: Unused variable 'varid' declared at (1) [-Wunused-variable] [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o /home/jenkins/workspace/clubb_timestep/src/Input_fields/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:788:31: 788 | tausrf_in(:) = missing_value | ^ Warning: 'tausrf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] ---------------- Running twp_ice ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 /home/jenkins/workspace/clubb_timestep/src/readiopdata_core/readiopdata_core_module.F90:761:59: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'tausrf_in.dim[0].ubound' was declared here [ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:260:16: 260 | integer :: k | 1 Warning: Unused variable 'k' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:264:17: 264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s] | 1 Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:243:31: 243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing ) | 1 Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument] [ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o [ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:285:47: 285 | thlm_forcing(1:nlevels) = dtls(1:nlevels,1) | ^ Warning: 'nlevels' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/readiopdata_module.F90:258:22: 258 | integer :: nlevels | ^ note: 'nlevels' was declared here [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:57:8: 57 | use input_names, only: & | 1 Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:165:13: 165 | p_in_Pa, & ! Pressure [Pa] | 1 Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:160:8: 160 | rt, & ! Total water mixing ratio sounding [kg/kg] | 1 Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:166:10: 166 | subs ! Vertical velocity sounding [m/s or Pa/s] | 1 Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:159:11: 159 | theta, & ! Liquid potential temperature sounding [K] | 1 Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:161:7: 161 | u, & ! u wind sounding [m/s] | 1 Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:163:8: 163 | ug, & ! u geostrophic wind sounding [m/s] | 1 Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:162:7: 162 | v, & ! v wind sounding [m/s] | 1 Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:164:8: 164 | vg, & ! v geostrophic wind sounding [m/s] | 1 Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_timestep/src/Input_fields/sounding.F90:158:7: 158 | z, & ! Altitude [m] | 1 Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [ 83%] Linking Fortran static library libinput_fields_lib.a [ 83%] Built target input_fields_lib [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/cubic_solve_tests.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:407:27: 407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:406:22: 406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:462:22: 462 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:221:27: 221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:220:22: 220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/fill_holes_tests.F90:275:22: 275 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/cubic_solve_tests.F90:179:16: 179 | if ( any( aimag( roots_cmp(k,:) ) /= zero ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o [ 85%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o [ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o [ 87%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [ 87%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o [ 88%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [ 88%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o [ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o /home/jenkins/workspace/clubb_timestep/src/Microphys/ice_dfsn_module.F90:282:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_timestep/src/Microphys/ice_dfsn_module.F90:296:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 89%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [ 91%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/mu_sigma_hm_tests.F90:511:17: 511 | if ( any( .not. l_pass_test_3 ) ) then | ^ Warning: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_timestep/src/G_unit_test_types/mu_sigma_hm_tests.F90:137:19: 137 | l_pass_test_3, & ! Flag for passing test 3 | ^ note: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' was declared here [ 91%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o [ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o ---------------- Running mc3e ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 /home/jenkins/workspace/clubb_timestep/output/mc3e.in Output directory: /home/jenkins/workspace/clubb_timestep/output =================== Running mc3e =================== - using install dir (selected): /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble - using executable: /home/jenkins/workspace/clubb_timestep/install/selected/clubb_standalone iteration: 1 / 1296 -- time = 3000.0s / 3888000.0s iteration: 2 / 1296 -- time = 6000.0s / 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= 231000.0s / 3888000.0s iteration: 78 / 1296 -- time = 234000.0s / 3888000.0s iteration: 79 / 1296 -- time = 237000.0s / 3888000.0s iteration: 80 / 1296 -- time = 240000.0s / 3888000.0s iteration: 81 / 1296 -- time = 243000.0s / 3888000.0s iteration: 82 / 1296 -- time = 246000.0s / 3888000.0s iteration: 83 / 1296 -- time = 249000.0s / 3888000.0s iteration: 84 / 1296 -- time = 252000.0s / 3888000.0s iteration: 85 / 1296 -- time = 255000.0s / 3888000.0s iteration: 86 / 1296 -- time = 258000.0s / 3888000.0s iteration: 87 / 1296 -- time = 261000.0s / 3888000.0s iteration: 88 / 1296 -- time = 264000.0s / 3888000.0s iteration: 89 / 1296 -- time = 267000.0s / 3888000.0s iteration: 90 / 1296 -- time = 270000.0s / 3888000.0s iteration: 91 / 1296 -- time = 273000.0s / 3888000.0s iteration: 92 / 1296 -- time = 276000.0s / 3888000.0s iteration: 93 / 1296 -- time = 279000.0s / 3888000.0s iteration: 94 / 1296 -- time = 282000.0s / 3888000.0s iteration: 95 / 1296 -- time = 285000.0s / 3888000.0s iteration: 96 / 1296 -- time = 288000.0s / 3888000.0s iteration: 97 / 1296 -- time = 291000.0s / 3888000.0s iteration: 98 / 1296 -- time = 294000.0s / 3888000.0s iteration: 99 / 1296 -- time = 297000.0s / 3888000.0s iteration: 100 / 1296 -- time = 300000.0s / 3888000.0s iteration: 101 / 1296 -- time = 303000.0s / 3888000.0s iteration: 102 / 1296 -- time = 306000.0s / 3888000.0s iteration: 103 / 1296 -- time = 309000.0s / 3888000.0s iteration: 104 / 1296 -- time = 312000.0s / 3888000.0s iteration: 105 / 1296 -- time = 315000.0s / 3888000.0s iteration: 106 / 1296 -- time = 318000.0s / 3888000.0s iteration: 107 / 1296 -- time = 321000.0s / 3888000.0s iteration: 108 / 1296 -- time = 324000.0s / 3888000.0s iteration: 109 / 1296 -- time = 327000.0s / 3888000.0s iteration: 110 / 1296 -- time = 330000.0s / 3888000.0s iteration: 111 / 1296 -- time = 333000.0s / 3888000.0s iteration: 112 / 1296 -- time = 336000.0s / 3888000.0s iteration: 113 / 1296 -- time = 339000.0s / 3888000.0s iteration: 114 / 1296 -- time = 342000.0s / 3888000.0s iteration: 115 / 1296 -- time = 345000.0s / 3888000.0s iteration: 116 / 1296 -- time = 348000.0s / 3888000.0s iteration: 117 / 1296 -- time = 351000.0s / 3888000.0s iteration: 118 / 1296 -- time = 354000.0s / 3888000.0s iteration: 119 / 1296 -- time = 357000.0s / 3888000.0s iteration: 120 / 1296 -- time = 360000.0s / 3888000.0s iteration: 121 / 1296 -- time = 363000.0s / 3888000.0s iteration: 122 / 1296 -- time = 366000.0s / 3888000.0s iteration: 123 / 1296 -- time = 369000.0s / 3888000.0s iteration: 124 / 1296 -- time = 372000.0s / 3888000.0s iteration: 125 / 1296 -- time = 375000.0s / 3888000.0s iteration: 126 / 1296 -- time = 378000.0s / 3888000.0s iteration: 127 / 1296 -- time = 381000.0s / 3888000.0s iteration: 128 / 1296 -- time = 384000.0s / 3888000.0s iteration: 129 / 1296 -- time = 387000.0s / 3888000.0s iteration: 130 / 1296 -- time = 390000.0s / 3888000.0s iteration: 131 / 1296 -- time = 393000.0s / 3888000.0s iteration: 132 / 1296 -- time = 396000.0s / 3888000.0s iteration: 133 / 1296 -- time = 399000.0s / 3888000.0s iteration: 134 / 1296 -- time = 402000.0s / 3888000.0s iteration: 135 / 1296 -- time = 405000.0s / 3888000.0s iteration: 136 / 1296 -- time = 408000.0s / 3888000.0s iteration: 137 / 1296 -- time = 411000.0s / 3888000.0s iteration: 138 / 1296 -- time = 414000.0s / 3888000.0s iteration: 139 / 1296 -- time = 417000.0s / 3888000.0s iteration: 140 / 1296 -- time = 420000.0s / 3888000.0s iteration: 141 / 1296 -- time = 423000.0s / 3888000.0s iteration: 142 / 1296 -- time = 426000.0s / 3888000.0s iteration: 143 / 1296 -- time = 429000.0s / 3888000.0s iteration: 144 / 1296 -- time = 432000.0s / 3888000.0s iteration: 145 / 1296 -- time = 435000.0s / 3888000.0s iteration: 146 / 1296 -- time = 438000.0s / 3888000.0s iteration: 147 / 1296 -- time = 441000.0s / 3888000.0s iteration: 148 / 1296 -- time = 444000.0s / 3888000.0s iteration: 149 / 1296 -- time = 447000.0s / 3888000.0s iteration: 150 / 1296 -- time = 450000.0s / 3888000.0s iteration: 151 / 1296 -- time = 453000.0s / 3888000.0s iteration: 152 / 1296 -- time = 456000.0s / 3888000.0s iteration: 153 / 1296 -- time = 459000.0s / 3888000.0s iteration: 154 / 1296 -- time = 462000.0s / 3888000.0s iteration: 155 / 1296 -- time = 465000.0s / 3888000.0s iteration: 156 / 1296 -- time = 468000.0s / 3888000.0s iteration: 157 / 1296 -- time = 471000.0s / 3888000.0s iteration: 158 / 1296 -- time = 474000.0s / 3888000.0s iteration: 159 / 1296 -- time = 477000.0s / 3888000.0s iteration: 160 / 1296 -- time = 480000.0s / 3888000.0s iteration: 161 / 1296 -- time = 483000.0s / 3888000.0s Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 1 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 2 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 3 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 4 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 5 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 6 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 7 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 11 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 13 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 15 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 16 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 17 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 18 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 19 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 20 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 21 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 22 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 23 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 24 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 25 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 26 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 27 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 28 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 29 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 30 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 31 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 32 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 33 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 34 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 35 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 36 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 37 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 38 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 39 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 40 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 41 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 42 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 43 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 44 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 45 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 46 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 47 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 48 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 49 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 50 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 51 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 52 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 53 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 54 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 55 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 56 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rtm < 0 in Before BUGSrad. at i = 1 and k = 57 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 1 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 2 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 3 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 4 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 5 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 6 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 7 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 11 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 13 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 15 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 16 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 17 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 18 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 19 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 20 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 21 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 22 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 23 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 24 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 25 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 26 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 27 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 28 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 29 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 30 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 31 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 32 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 33 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 34 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 35 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 36 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 37 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 38 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 39 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 40 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 41 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 42 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 43 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 44 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 45 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 46 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 47 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 48 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 49 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 50 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 51 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 52 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 53 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 54 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 55 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 56 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees rvm < 0 in Before BUGSrad. at i = 1 and k = 57 Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees Fatal error in radiation_driver: Fatal error in CLUBB - MPI Process 1 / Chunk index 1 Column index not available. Latitude/Longitude for column 1: 15.00/-56.50 Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees Fatal error in radiation, check your parameter values and timestep Writing timing results to: /home/jenkins/workspace/clubb_timestep/output/mc3e.timing Note: The following floating-point exceptions are signalling: IEEE_UNDERFLOW_FLAG IEEE_DENORMAL ERROR STOP Fatal error in clubb, check your parameter values and timestep Error termination. Backtrace: #0 0x4038e0 in ??? #1 0x403af7 in ??? #2 0x40375e in ??? #3 0x72e069c2a1c9 in __libc_start_call_main at ../sysdeps/nptl/libc_start_call_main.h:58 #4 0x72e069c2a28a in __libc_start_main_impl at ../csu/libc-start.c:360 #5 0x403784 in ??? #6 0xffffffffffffffff in ??? CLUBB runner exited with status 1 -------------------------------------------------- run_scm.py total runtime: 4.62 s -------------------------------------------------- ---- FAIL @ dt = 3000 [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [ 93%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o /home/jenkins/workspace/clubb_timestep/src/Benchmark_cases/bomex.F90:22:48: 22 | gr, rtm, l_readiopdata, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o [ 95%] Linking Fortran static library libG_unit_test_lib.a [ 95%] Built target G_unit_test_lib [ 95%] Linking Fortran static library libbenchmark_cases_lib.a [ 95%] Built target benchmark_cases_lib [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [ 96%] Linking Fortran static library libmicrophys_lib.a [ 96%] Built target microphys_lib [ 96%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [ 98%] Linking Fortran executable G_unit_tests [ 98%] Built target G_unit_tests [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o /home/jenkins/workspace/clubb_timestep/src/clubb_driver.F90:5542:76: 5542 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver.F90:255:28: 255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) ) | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [ 98%] Linking Fortran static library libclubb_driver_lib.a [ 98%] Built target clubb_driver_lib [ 98%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [100%] Linking Fortran executable clubb_standalone /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:273:14: 273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:278:14: 278 | if ( any( test_correlation /= reference_correlation ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:283:14: 283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:288:14: 288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:293:14: 293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:512:14: 512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:521:14: 521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:520:14: 520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:519:14: 519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:518:14: 518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:517:14: 517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:431:14: 431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:371:14: 371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:370:14: 370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:369:14: 369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:368:14: 368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_timestep/src/clubb_loss_driver_test.F90:367:14: 367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [100%] Linking Fortran executable clubb_thread_test [100%] Linking Fortran executable clubb_driver_test [100%] Linking Fortran executable clubb_standalone_loss [100%] Built target clubb_thread_test [100%] Built target clubb_driver_test [100%] Built target clubb_standalone [100%] Built target clubb_standalone_loss [100%] Linking Fortran executable clubb_loss_driver_test [100%] Built target clubb_loss_driver_test [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [100%] Linking Fortran executable clubb_tuner [100%] Built target clubb_tuner Install the project... -- Install configuration: "Release" -- Installing: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_tuner -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/lib" -- Installing: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/G_unit_tests -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/lib" -- Installing: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_thread_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/lib" -- Installing: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_standalone -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/lib" -- Installing: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_driver_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/lib" -- Installing: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_standalone_loss -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/lib" -- Installing: /home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_loss_driver_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_timestep/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-orntvmsawrrc6c2cghpicbozqeg3eqtw/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. [Pipeline] catchError [Pipeline] { [Pipeline] sh + python tests/run_clubb_conv_test.py Installing uv 0.11.32 in /home/jenkins/workspace/clubb_timestep/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_timestep/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_timestep/.venv-python Using CPython 3.12.3 interpreter at: /usr/bin/python3.12 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing python requirements into /home/jenkins/workspace/clubb_timestep/.venv-python Using Python 3.12.3 environment at: .venv-python Resolved 12 packages in 411ms Downloading pygments (1.2MiB) Downloading numpy (16.0MiB) Downloading meson (1.1MiB) Downloading netcdf4 (10.1MiB) Downloading cftime (1.6MiB) Downloaded cftime Downloaded netcdf4 Downloaded meson Downloaded pygments Downloaded numpy Prepared 12 packages in 2.28s Installed 12 packages in 72ms + certifi==2026.10.19 + cftime==1.6.6.1 + iniconfig==2.3.1 + meson==1.12.1 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pluggy==1.7.0 + pygments==2.21.0 + pytest==9.1.1 + tabulate==0.10.0 Ready: /home/jenkins/workspace/clubb_timestep/.venv-python/bin/python Creating initial bomex 90-min run... Done! Restarting bomex with time step 1 seconds... Done! Restarting bomex with time step 2 seconds... Done! Restarting bomex with time step 4 seconds... Done! Restarting bomex with time step 8 seconds... Done! Restarting bomex with time step 16 seconds... Done! Restarting bomex with time step 30 seconds... Done! Restarting bomex with time step 60 seconds... Done! Restarting bomex with time step 120 seconds... Done! Restarting bomex with time step 240 seconds... Done! Generating plot... first 4 points: slope = 0.4803415837907895, R^2 = 0.7300075394901495 all 8 points: slope = 0.663291502338725, R^2 = 0.8567751816691499 CLUBB failed to converge! [Pipeline] } ERROR: script returned exit code 1 Setting overall build result to FAILURE [Pipeline] // catchError [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } Running on Jenkins in /home/jenkins/workspace/clubb_timestep [Pipeline] { [Pipeline] checkout The recommended git tool is: git DEPRECATED: The 'Wipe out repository & force clone' extension is deprecated for Pipeline jobs. Pipeline users should use the deleteDir() step instead. Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_timestep # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 8369512fcc6487603491e12ac13376de2aec2a0b (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 8369512fcc6487603491e12ac13376de2aec2a0b # timeout=10 Commit message: "Clubb params 1d to 2d fix (#1392)" [Pipeline] withEnv [Pipeline] { [Pipeline] catchError [Pipeline] { [Pipeline] sh + python3 tests/run_timestep_sweep.py -jax=cpu -workers 4 -cases 'arm,atex,bomex,clex9_oct14, dycoms2_rf01,dycoms2_rf01_fixed_sst, dycoms2_rf02_do,dycoms2_rf02_ds,dycoms2_rf02_nd, fire,gabls2,gabls3_night,jun25_altocu,lba, nov11_altocu,rico,rico_silhs,wangara' -output_root output/jax_timestep_sweep Running 18 case sweeps with 4 workers ---------------- Running nov11_altocu ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running clex9_oct14 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running lba ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running rico ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf02_ds ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf02_do ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running rico_silhs ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running atex ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running arm ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running gabls2 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running bomex ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf01 ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf01_fixed_sst ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running dycoms2_rf02_nd ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running fire ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running gabls3_night ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running jun25_altocu ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 ---------------- Running wangara ---------------- --- PASS @ dt = 600 --- PASS @ dt = 1200 --- PASS @ dt = 1800 --- PASS @ dt = 2400 --- PASS @ dt = 3000 [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // parallel [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu SMTP connection error while sending email. Retrying once more in 10 seconds. SMTP connection error while sending email. Retrying once more in 10 seconds. Failed after second try sending email [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] End of Pipeline Finished: FAILURE