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* wip

* wip

* test is basically done -&gt; find out why some jax runs fail, mabe also run fortran even if jax fails

* fortran is tested regardless of whether jax fails

* changed jenkinsfile + removed l_Lscale_plume_centered from flag file + flag_set readme + lil print F90 fix

* added comments and a new flagset for jax tests

* added new jax flag config file to Jenkinstest
</comment><date>2026-09-16 15:41:39 -0500</date><id>3a0c0fbbeb0eae52b7b98be4555b18dc6036398a</id><msg>Test different f90 vs jax flags (#1357)</msg><path><editType>add</editType><file>input/flag_sets/config_core_flags_wo_never_supported_jax_features.json</file></path><path><editType>add</editType><file>input/flag_sets/README.md</file></path><path><editType>edit</editType><file>run_scripts/run_clubb_w_varying_flags.py</file></path><path><editType>edit</editType><file>tests/run_jax_vs_fortran_cases.py</file></path><path><editType>edit</editType><file>input/flag_sets/run_bindiff_w_flags_config_core_flags.json</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_jax_tests/Jenkinsfile</file></path><path><editType>edit</editType><file>.gitignore</file></path><path><editType>edit</editType><file>tests/README</file></path><path><editType>edit</editType><file>src/CLUBB_core/err_info_type_module.F90</file></path><path><editType>add</editType><file>utilities/flag_sets.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>tests/pytests/test_column_mirror.py</affectedPath><affectedPath>tests/README</affectedPath><affectedPath>jenkins_tests/clubb_column_mirror_test/Jenkinsfile</affectedPath><affectedPath>tests/check_mirrored_multi_col_output.py</affectedPath><commitId>e2f38c22369792200d556168276e492b5bff6717</commitId><timestamp>1789627411000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Consolidating column mirror test functionality into the test script itself - now the script does it all, no need to configure/build/run anymore. Also hugely improving comments and explainations
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integration (#1356)

* Starting to integrate jax with dash more and making the run_scm -jax flag a little more useful by being able to choose to run on the CPU or GPU via -jax=cpu or -jax=gpu rather than requireing environment variables

* Making the jax option even fancier, dash runner chooser is better/smarter now too

* Make CLUBB-JAX launcher portable across macOS and Linux

* Making the jax device detection work without needing the venvs setup first.

* Keep JAX radiation compiled with static timestep scheduling

Preserve the host radiation flag as a static JIT argument and mirror the Fortran conditional directly. Remove the Metal-only eager execution path and redundant branch helpers.

Cover both schedule states, statistics cadence, soil update ordering, and alternating time-dependent radiation calls. Validated with CPU and Metal tests and three-step standalone runs.

* Microphys loop push (#1355)

* First set of loop pushes - feature addition to stats too to allow for calling stats_update multiple times in a timestep and averaging the results, which is quite nice for silhs and allows us to get rid of the special microphysics stats type

* More loop pushes

* Tiny changes to restore BFBness

* Pushing loop into advance_microphys

* Little more loop push

* More basic loop pushing

* More loop pushing, also found what seems to be a bug with additional columns, theres code that uses only the first one. Im leaving this in for now to maintain BFBness, but labeled the problem areas with TODOs

* Potentially final batch of loop pushes

* Adding acc fixes for microphys stuff - the 2D versions called are GPUized, so they need acc data statements surrounding them

* Removing unneccesary single col versions of lots of things

* Restoring some comments and formatting

* A little more restoration, maybe unnecceary

* Little OpenACC fixes for microphys code RESOLVED:900681c91bdbdf8d6cd069bab01663ebac1a3279

* renamed jax jenkins test to clubb_jax_tests

* Making column mirror test work by comparing two different output files rather than one. This test now runs once with 3 different columns in a certain order, say ABC, and again with reverse order CBA, then ensures that A=A B=B and C=C (bit-for-bit equivalence) in both files. This should fail now actually, as there is currently a bug, and this update is intented to improve this test so that it fails before we fix the bug

* Making column mirror test use CPU. This makes it much faster and doesn't change the test at all - not sure why I made it use GPU originally.

* Fixing microphys bug that has been around for quite a while. This happened when making clubb standalone use multiple columns, and only affects columns other than the first. This is BIT_CHANGING, but only for microphysics cases using multiple columns (#1358)

* Test different f90 vs jax flags (#1357)

* wip

* wip

* test is basically done -&gt; find out why some jax runs fail, mabe also run fortran even if jax fails

* fortran is tested regardless of whether jax fails

* changed jenkinsfile + removed l_Lscale_plume_centered from flag file + flag_set readme + lil print F90 fix

* added comments and a new flagset for jax tests

* added new jax flag config file to Jenkinstest

* Small UI fixes to make entry boxes refresh better

* Making python/jax driver status prints happen right away

* Removing accidentally added file

* Improving readmes

* Simpliciation cleanup

---------

Co-authored-by: Daniel Ebel &lt;debel@uwm.edu&gt;
Co-authored-by: Daniel Ebel &lt;124399436+shellwitz@users.noreply.github.com&gt;
</comment><date>2026-09-18 01:50:27 -0500</date><id>17b29a7e938300692cec5c6c7e78aae7b9578568</id><msg>Jax integration 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_class='hudson.plugins.git.GitChangeSet'><affectedPath>tests/README</affectedPath><affectedPath>tests/check_mirrored_multi_col_output.py</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</affectedPath><commitId>9baabf2f36b5f7b9c88b719954598e278be24a1a</commitId><timestamp>1789512567000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making column mirror test work by comparing two different output files rather than one. This test now runs once with 3 different columns in a certain order, say ABC, and again with reverse order CBA, then ensures that A=A B=B and C=C (bit-for-bit equivalence) in both files. This should fail now actually, as there is currently a bug, and this update is intented to improve this test so that it fails before we fix the bug
</comment><date>2026-09-15 17:49:27 -0500</date><id>9baabf2f36b5f7b9c88b719954598e278be24a1a</id><msg>Making column mirror test work by comparing two different output files rather than one. This test now runs once with 3 different columns in a certain order, say ABC, and again with reverse order CBA, then ensures that A=A B=B and C=C (bit-for-bit equivalence) in both files. This should fail now actually, as there is currently a bug, and this update is intented to improve this test so that it fails before we fix the bug</msg><path><editType>edit</editType><file>tests/check_mirrored_multi_col_output.py</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</file></path><path><editType>edit</editType><file>tests/README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_column_mirror_test/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</affectedPath><commitId>26cfce3b9083a3d32fe4fbec9d4294c2cbafdc27</commitId><timestamp>1789521623000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making column mirror test use CPU. This makes it much faster and doesn't change the test at all - not sure why I made it use GPU originally.
</comment><date>2026-09-15 20:20:23 -0500</date><id>26cfce3b9083a3d32fe4fbec9d4294c2cbafdc27</id><msg>Making column mirror test use CPU. This makes it much faster and doesn't change the test at all - not sure why I made it use GPU originally.</msg><path><editType>delete</editType><file>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</file></path><path><editType>add</editType><file>jenkins_tests/clubb_column_mirror_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/Microphys/microphys_driver.F90</affectedPath><affectedPath>src/SILHS/est_kessler_microphys_module.F90</affectedPath><affectedPath>src/Microphys/mixed_moment_PDF_integrals.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>37da5d26c1a8137c484f3b8b0eb1a5d79ac011b8</commitId><timestamp>1789524301000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Fixing microphys bug that has been around for quite a while. This happened when making clubb standalone use multiple columns, and only affects columns other than the first. This is BIT_CHANGING, but only for microphysics cases using multiple columns (#1358)
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