Started by an SCM change Obtained jenkins_tests/clubb_restart/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] stage [Pipeline] { (Independent workflows) [Pipeline] parallel [Pipeline] { (Branch: JAX multicolumn restart) [Pipeline] { (Branch: JAX SILHS sequence restart) [Pipeline] { (Branch: Run multicolumn restart test) [Pipeline] { (Branch: Run SILHS restart test) [Pipeline] stage [Pipeline] { (JAX multicolumn restart) [Pipeline] stage [Pipeline] { (JAX SILHS sequence restart) [Pipeline] stage [Pipeline] { (Run multicolumn restart test) [Pipeline] stage [Pipeline] { (Run SILHS restart test) [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_restart [Pipeline] node [Pipeline] node Running on nelson in /home/jenkins/workspace/clubb_restart [Pipeline] node [Pipeline] { [Pipeline] { [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 09499c45d0ef25810f48bbd43c8f92afa1497caa (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 09499c45d0ef25810f48bbd43c8f92afa1497caa # timeout=10 Commit message: "Consolidate CLUBB workflows into skills (#1394)" > git rev-list --no-walk a8c952996409f8c94d6a28714171145ed7d2c2ae # timeout=10 [Pipeline] withEnv [Pipeline] { [Pipeline] catchError [Pipeline] { [Pipeline] sh + python3 tests/run_restart_test.py bomex -jax -multicol C8/0.2:0.8/4 -dt_main 60 -dt_rad 60 -tout 60 -override stats_tsamp=60. Installing uv 0.11.32 in /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_restart/.venv-python Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB) Downloaded cpython-3.12.13-linux-x86_64-gnu (download) Using CPython 3.12.13 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing python requirements into /home/jenkins/workspace/clubb_restart/.venv-python Using Python 3.12.13 environment at: .venv-python Still waiting to schedule task Waiting for next available executor on ‘Jenkins’ Still waiting to schedule task Waiting for next available executor Resolved 12 packages in 308ms Downloading pygments (1.2MiB) Downloading meson (1.1MiB) Downloading numpy (16.0MiB) Downloading cftime (1.6MiB) Downloading netcdf4 (10.1MiB) Downloaded cftime Downloaded netcdf4 Downloaded meson Downloaded pygments Downloaded numpy Prepared 12 packages in 784ms Installed 12 packages in 24ms + certifi==2026.7.22 + cftime==1.6.6.1 + iniconfig==2.3.1 + meson==1.12.1 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pluggy==1.7.0 + pygments==2.21.0 + pytest==9.1.1 + tabulate==0.10.0 Ready: /home/jenkins/workspace/clubb_restart/.venv-python/bin/python Running standard bomex case... Running on mitch in /home/jenkins/workspace/clubb_restart [Pipeline] { [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 09499c45d0ef25810f48bbd43c8f92afa1497caa (refs/remotes/origin/master) > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 Commit message: "Consolidate CLUBB workflows into skills (#1394)" [Pipeline] withEnv [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ . /opt/lmod//lmod/lmod/init/profile +++ '[' -z '' ']' +++ LMOD_ALLOW_ROOT_USE=yes +++ '[' -n '' ']' +++ '[' yes '!=' yes ']' +++ '[' -z '' ']' +++ export MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles +++ MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles +++ export USER=jenkins +++ USER=jenkins ++++ uname +++ export LMOD_sys=Linux +++ LMOD_sys=Linux +++ '[' -z '' ']' +++ '[' -f /etc/lmod/.modulespath ']' +++ LMOD_MODULEPATH_INIT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath +++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath ']' ++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core +++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core +++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core ++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core +++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core +++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core +++ '[' -n '' ']' +++ export BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash +++ BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash +++ '[' -z '' ']' +++ export MANPATH=: +++ MANPATH=: ++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto MANPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man +++ export MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man: +++ MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man: +++ findExec READLINK_CMD /usr/bin/readlink readlink +++ Nm=READLINK_CMD +++ confPath=/usr/bin/readlink +++ execNm=readlink +++ eval READLINK_CMD=/usr/bin/readlink ++++ READLINK_CMD=/usr/bin/readlink +++ '[' '!' -x /usr/bin/readlink ']' +++ unset Nm confPath execNm +++ findExec PS_CMD /usr/bin/ps ps +++ Nm=PS_CMD +++ confPath=/usr/bin/ps +++ execNm=ps +++ eval PS_CMD=/usr/bin/ps ++++ PS_CMD=/usr/bin/ps +++ '[' '!' -x /usr/bin/ps ']' +++ unset Nm confPath execNm +++ findExec EXPR_CMD /usr/bin/expr expr +++ Nm=EXPR_CMD +++ confPath=/usr/bin/expr +++ execNm=expr +++ eval EXPR_CMD=/usr/bin/expr ++++ EXPR_CMD=/usr/bin/expr +++ '[' '!' -x /usr/bin/expr ']' +++ unset Nm confPath execNm +++ findExec BASENAME_CMD /usr/bin/basename basename +++ Nm=BASENAME_CMD +++ confPath=/usr/bin/basename +++ execNm=basename +++ eval BASENAME_CMD=/usr/bin/basename ++++ BASENAME_CMD=/usr/bin/basename +++ '[' '!' -x /usr/bin/basename ']' +++ unset Nm confPath execNm +++ unset -f findExec +++ '[' -f /proc/4108519/exe ']' ++++ /usr/bin/readlink /proc/4108519/exe +++ my_shell=/usr/bin/bash ++++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' +++ my_shell=/usr/bin/bash ++++ /usr/bin/basename /usr/bin/bash +++ my_shell=bash +++ case ${my_shell} in +++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash ']' +++ . /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash ++++ '[' -z '' ']' ++++ case "$-" in ++++ __lmod_vx=x ++++ '[' -n x ']' ++++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted ++++ unset __lmod_vx +++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 > git checkout -f 09499c45d0ef25810f48bbd43c8f92afa1497caa # timeout=10 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE Avoid second fetch Checking out Revision 09499c45d0ef25810f48bbd43c8f92afa1497caa (refs/remotes/origin/master) Commit message: "Consolidate CLUBB workflows into skills (#1394)" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 09499c45d0ef25810f48bbd43c8f92afa1497caa # timeout=10 [Pipeline] withEnv [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/include -- Configuring done (0.9s) -- Generating done (0.1s) -- Build files have been written to: /home/jenkins/workspace/clubb_restart/build/gcc_PRECdouble -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/include -- Configuring done (10.9s) Using inferred toolchain file: /home/jenkins/workspace/clubb_restart/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_restart/build/gcc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_restart/build/gcc_PRECdouble Running CMake configure... [ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/lsame.f.o [ 0%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/xerbla.f.o [ 0%] Building Fortran object src/Microphys/SCM_Activation/CMakeFiles/scm_activation_lib.dir/aer_ccn_act_k.F90.o [ 0%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dcopy.f.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dasum.f.o [ 1%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslc.f.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/daxpy.f.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ddot.f.o [ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbcon.f.o [ 1%] Built target clubb_lapack_shared [ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbequ.f.o [ 2%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslr.f.o [ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sasum.f.o [ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/isamax.f.o [ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbmv.f.o [ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbrfs.f.o [ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsv.f.o [ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/saxpy.f.o [ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsvx.f.o [ 3%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/scopy.f.o [ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtf2.f.o [ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrf.f.o [ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sdot.f.o [ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrs.f.o [ 5%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbcon.f.o [ 5%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgemm.f.o [ 6%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgemv.f.o [ 6%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dger.f.o [ 6%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtcon.f.o [ 6%] Linking Fortran static library libscm_activation_lib.a [ 6%] Building Fortran object 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src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtf2.f.o [ 8%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgttrs.f.o [ 8%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtts2.f.o [ 8%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/disnan.f.o [ 9%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlabad.f.o [ 9%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtrf.f.o [ 9%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlacn2.f.o [ 9%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlacpy.f.o [ 9%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlae2.f.o [ 9%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtrs.f.o [ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgemm.f.o [ 11%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaev2.f.o [ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgemv.f.o [ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sger.f.o [ 11%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlagtm.f.o [ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtcon.f.o [ 11%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaisnan.f.o [ 11%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlamch.f.o [ 12%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtrfs.f.o [ 12%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlangb.f.o [ 12%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtsv.f.o [ 12%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtsvx.f.o [ 12%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgttrf.f.o [ 12%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgttrs.f.o [ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtts2.f.o [ 14%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlangt.f.o [ 14%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sisnan.f.o [ 14%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlanst.f.o [ 14%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlansy.f.o [ 14%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlantb.f.o [ 14%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqgb.f.o [ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlapy2.f.o [ 14%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slabad.f.o [ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqsy.f.o [ 15%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slacn2.f.o [ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlarfb.f.o [ 15%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slacpy.f.o [ 16%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slae2.f.o [ 16%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaev2.f.o [ 16%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slagtm.f.o [ 16%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlarf.f.o [ 17%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlarfg.f.o [ 17%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaisnan.f.o [ 18%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slamch.f.o [ 18%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlarft.f.o [ 18%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slangb.f.o [ 18%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlartg.f.o [ 18%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlascl.f.o [ 18%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaset.f.o [ 18%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slangt.f.o [ 18%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slanst.f.o [ 18%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slansy.f.o [ 19%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlasr.f.o [ 19%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlasrt.f.o [ 20%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slantb.f.o [ 20%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slapy2.f.o [ 20%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlassq.f.o [ 21%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlatbs.f.o [ 21%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaswp.f.o [ 21%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaqgb.f.o [ 21%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaqsy.f.o [ 21%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slarfb.f.o [ 21%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlatrd.f.o [ 21%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dnrm2.f.o [ 21%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorg2l.f.o [ 21%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dorg2r.f.o [ 22%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slarf.f.o [ 23%] 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src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaset.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slascl.f.o [ 25%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/drscl.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slasr.f.o [ 25%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dscal.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slasrt.f.o [ 25%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slassq.f.o [ 26%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaswp.f.o [ 26%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsteqr.f.o [ 27%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsterf.f.o [ 27%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slatbs.f.o [ 27%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slatrd.f.o [ 27%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dswap.f.o [ 27%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/snrm2.f.o [ 27%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyev.f.o [ 28%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorg2l.f.o [ 28%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsymv.f.o [ 28%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyr2.f.o [ 29%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyr2k.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorgql.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorg2r.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorgqr.f.o [ 29%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sorgtr.f.o [ 30%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/spoequ.f.o [ 30%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsyrk.f.o [ 30%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytd2.f.o [ 30%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dsytrd.f.o [ 30%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/spotrf2.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtbsv.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmm.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/spotrf.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/srscl.f.o [ 31%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrmv.f.o [ 31%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sscal.f.o [ 32%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssteqr.f.o [ 32%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssterf.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dtrsm.f.o [ 32%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sswap.f.o [ 32%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/idamax.f.o [ 32%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyev.f.o [ 33%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssymv.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ieeeck.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlc.f.o [ 34%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iladlr.f.o -- Generating done (3.7s) -- Build files have been written to: /home/jenkins/workspace/clubb_restart/build/gcc_PRECdouble [ 34%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyr2.f.o [ 34%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyr2k.f.o [ 34%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssyrk.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/iparmq.f.o [ 35%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ilaenv.f.o [ 35%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssytd2.f.o [ 36%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ssytrd.f.o [ 36%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/stbsv.f.o [ 36%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strmm.f.o [ 36%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strmv.f.o [ 37%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/strsm.f.o [ 37%] Built target clubb_lapack_double [ 37%] Built target clubb_lapack_single [ 38%] Linking Fortran static library liblapack_lib.a [ 38%] Built target lapack_lib [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameter_indices.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_precision.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/array_index.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/model_flags.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/error_code.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_interfaces.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/constants_clubb.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/tridiag_lu_solver.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_lu_solver.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/endian.F90.o /home/jenkins/workspace/clubb_restart/src/CLUBB_core/endian.F90:167:53: 167 | call mvbits( i_element, 56, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/endian.F90:159:39: 159 | integer(kind=int64) :: i_element_br | ^ note: 'i_element_br' declared here /home/jenkins/workspace/clubb_restart/src/CLUBB_core/endian.F90:123:53: 123 | CALL MVBITS( i_element, 24, 8, i_element_br, 0 ) | ^ Warning: 'i_element_br' is used uninitialized [-Wuninitialized] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/endian.F90:117:69: 117 | INTEGER(KIND=int32) :: i_element_br | ^ note: 'i_element_br' declared here [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/T_in_K_module.F90.o [ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/LY93_pdf.F90.o [ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Nc_Ncn_eqns.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_roots.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/err_info_type_module.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/file_functions.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calendar.F90.o [ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_operations.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_bicgstab_solver.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mean_adv.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_tsdadg_pdf.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_parameter_module.F90.o /home/jenkins/workspace/clubb_restart/src/CLUBB_core/penta_bicgstab_solver.F90:140:10: 140 | if ( norm_rhs == 0.0) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/hydromet_pdf_parameter_module.F90.o [ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diagnose_correlations_module.F90.o [ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/code_timer_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/interpolation.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Skx_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/adg1_adg2_3d_luhar_pdf.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/corr_varnce_module.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_class.F90.o [ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/index_mapping.F90.o [ 44%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_solver_wrapper.F90.o [ 45%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameters_tunable.F90.o [ 45%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sponge_layer_damping.F90.o [ 46%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pos_definite_module.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o /home/jenkins/workspace/clubb_restart/src/CLUBB_core/parameters_tunable.F90:1822:30: 1822 | subroutine unpack_parameters & | ^ Warning: 'unpack_parameters' defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/remapping_module.F90:1212:43: 1212 | if(f(i,k+1)*f(i,k-1) epsilon(wp2_avg_after)*1000 ) then | ^ Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_wp2_wp3_module.F90:1470:20: 1470 | wp2_avg_before, & | ^ note: 'wp2_avg_before' was declared here [ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o [ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o [ 53%] Linking Fortran static library libclubb_core_lib.a [ 53%] Built target clubb_core_lib [ 53%] Building Fortran object src/CMakeFiles/text_writer_lib.dir/text_writer.F90.o [ 53%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [ 53%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjtq.F.o [ 53%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o [ 53%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic_constants.f90.o [ 53%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjmlt.F.o [ 53%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/kinds.F90.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/conice.F.o [ 54%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_physconst.F90.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa10g.F.o [ 54%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_local_means.F90.o [ 54%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_planck.F90.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa11g.F.o [ 55%] Linking Fortran static library libtext_writer_lib.a [ 56%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloud_correlate.F90.o [ 57%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/AiryFunction.f90.o [ 57%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/newexp.F90.o [ 57%] Built target text_writer_lib [ 58%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_rad.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12g.F.o [ 58%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloudg.F.o [ 58%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp1.F.o [ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa13g.F.o [ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa14g.F.o [ 59%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic.f90.o [ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp2.F.o [ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa15.F.o [ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/rayle.F.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw.F.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa17g.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18.F.o [ 61%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_iter.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18g.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19.F.o [ 61%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_ocastrndm.F90.o [ 61%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_sel.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19g.F.o [ 61%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_bs.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa20g.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_iter.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21.F.o [ 63%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_ocastrndm.F90.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21g.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22g.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa25.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa26.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27.F.o [ 64%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gascon.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa28.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27r.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa5g.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa6.F.o [ 66%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gases_ckd.F90.o [ 66%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7.F.o [ 66%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7g.F.o [ 66%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa8g.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa9g.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esati.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esat_new.F.o [ 67%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esatv.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/frzh.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/gamma.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmcol.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqi.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqw.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qsatvi.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qtadj.F.o [ 69%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_utilities.F90.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/slope.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqg.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqi.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqr.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqs.F.o [ 70%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_means.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_covar.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_all_MM.F90.o [ 71%] Linking Fortran static library libcoamps_lib.a [ 71%] Built target coamps_lib [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_means.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_Nrm_tendencies.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_variances.F90.o [ 72%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_swr.F.o [ 72%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_lwr.F.o [ 72%] Linking Fortran static library libKK_microphys_lib.a [ 72%] Built target KK_microphys_lib [ 72%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/est_kessler_microphys_module.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/parameters_silhs.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o [ 74%] Linking Fortran static library libbugsrad_lib.a [ 74%] Built target bugsrad_lib [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/generate_uniform_sample_module.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/math_utilities.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o /home/jenkins/workspace/clubb_restart/src/SILHS/silhs_importance_sample_module.F90:642:62: 637 | do category=1, num_importance_categories | 2 ...... 642 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o [ 75%] Linking Fortran static library libmorrison_microphys_lib.a [ 75%] Built target morrison_microphys_lib /home/jenkins/workspace/clubb_restart/src/SILHS/latin_hypercube_driver_module.F90:1638:10: 1638 | if ( X_u_chi(sample) < (one - cloud_frac_i) ) then | ^ Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/SILHS/latin_hypercube_driver_module.F90:1620:18: 1620 | cloud_frac_i | ^ note: 'cloud_frac_i' was declared here [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o [ 75%] Linking Fortran static library libsilhs_lib.a [ 75%] Built target silhs_lib [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o [ 76%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o [ 76%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o [ 76%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o [ 76%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [ 77%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o [ 78%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o /home/jenkins/workspace/clubb_restart/src/Numerical_recipes/ran_state.f90:8:59: 8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1 | 1 Warning: Integer outside symmetric range implied by Standard Fortran at (1) [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [ 80%] Linking Fortran static library libnumerical_recipes_lib.a [ 80%] Built target numerical_recipes_lib [ 80%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [ 80%] Linking Fortran static library libradiation_lib.a [ 80%] Built target radiation_lib [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1470:21: 1470 | if( (bmnth>2).and. isLeapYear(byear) ) jday = jday + 1 | 1 Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1492:18: 1492 | if(i==2.and.isLeapYear(iyear)) days_this_month = days_this_month + 1 | 1 Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1038:15: 1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1040:15: 1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1042:15: 1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1045:15: 1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1047:15: 1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1049:15: 1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:356:13: 356 | if( ANY(Ts_in == 0.0) ) then | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:620:12: 620 | if(T_in(i,nlev+1)/=missing_value) then | 1 Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:636:12: 636 | if(T_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:638:12: 638 | if(q_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:640:12: 640 | if(u_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:642:12: 642 | if(v_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:647:15: 647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:651:15: 651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:658:12: 658 | if(ug_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:660:12: 660 | if(vg_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1252:42: 1252 | character dim_name*( NF90_MAX_NAME ) | 1 Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:33: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:43: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:46: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1237:60: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1237:54: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1238:23: 1238 | var, use_NF90_REAL, status, required) | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1167:67: 1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, & | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:751:51: 751 | get_add_surface_data, ntime, & | 1 Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:750:81: 750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, & | 1 Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:290:32: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:290:38: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:291:19: 291 | integer :: varID, NCID | 1 Warning: Unused variable 'varid' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/Input_fields/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o [ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o [ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:788:31: 788 | tausrf_in(:) = missing_value | ^ Warning: 'tausrf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:59: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'tausrf_in.dim[0].ubound' was declared here [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:260:16: 260 | integer :: k | 1 Warning: Unused variable 'k' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:264:17: 264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s] | 1 Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:243:31: 243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing ) | 1 Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:285:47: 285 | thlm_forcing(1:nlevels) = dtls(1:nlevels,1) | ^ Warning: 'nlevels' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:258:22: 258 | integer :: nlevels | ^ note: 'nlevels' was declared here [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:57:8: 57 | use input_names, only: & | 1 Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:165:13: 165 | p_in_Pa, & ! Pressure [Pa] | 1 Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:160:8: 160 | rt, & ! Total water mixing ratio sounding [kg/kg] | 1 Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:166:10: 166 | subs ! Vertical velocity sounding [m/s or Pa/s] | 1 Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:159:11: 159 | theta, & ! Liquid potential temperature sounding [K] | 1 Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:161:7: 161 | u, & ! u wind sounding [m/s] | 1 Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:163:8: 163 | ug, & ! u geostrophic wind sounding [m/s] | 1 Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:162:7: 162 | v, & ! v wind sounding [m/s] | 1 Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:164:8: 164 | vg, & ! v geostrophic wind sounding [m/s] | 1 Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:158:7: 158 | z, & ! Altitude [m] | 1 Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [ 83%] Linking Fortran static library libinput_fields_lib.a [ 83%] Built target input_fields_lib [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/cubic_solve_tests.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/cubic_solve_tests.F90:179:16: 179 | if ( any( aimag( roots_cmp(k,:) ) /= zero ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:407:27: 407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:406:22: 406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:462:22: 462 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:221:27: 221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:220:22: 220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:275:22: 275 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [ 85%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o [ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o [ 87%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [ 87%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/mu_sigma_hm_tests.F90:511:17: 511 | if ( any( .not. l_pass_test_3 ) ) then | ^ Warning: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/mu_sigma_hm_tests.F90:137:19: 137 | l_pass_test_3, & ! Flag for passing test 3 | ^ note: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' was declared here /home/jenkins/workspace/clubb_restart/src/Microphys/ice_dfsn_module.F90:282:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_restart/src/Microphys/ice_dfsn_module.F90:296:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 88%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [ 89%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o [ 89%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o [ 90%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o | ^ Warning: 'val_below' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/remapping_module.F90:128:15: 128 | val_below, & ! The rho value of the level or spline connection point below [kg/m^3] | ^ note: 'val_below' was declared here [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o [ 47%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf_main.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf_main.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o [ 48%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_helper_module.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_utilities.F90.o [ 49%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o [ 50%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o /home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_windm_edsclrm_module.F90:322:70: 322 | if ( edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) /= zero .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_windm_edsclrm_module.F90:322:14: 322 | if ( edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) /= zero .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_windm_edsclrm_module.F90:343:71: 343 | if ( wpedsclrp(i,gr%k_lb_zm,sclr_idx%iiedsclr_thl) /= zero .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_windm_edsclrm_module.F90:343:12: 343 | if ( wpedsclrp(i,gr%k_lb_zm,sclr_idx%iiedsclr_thl) /= zero .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o /home/jenkins/workspace/clubb_restart/src/CLUBB_core/mixing_length.F90:1096:16: 1096 | if ( abs( dCAPE_dz_j - dCAPE_dz_j_minus_1 ) * 2 <= & | ^ Warning: 'dcape_dz_j' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/mixing_length.F90:730:42: 730 | real( kind = core_rknd ) :: dCAPE_dz_j, dCAPE_dz_j_minus_1, dCAPE_dz_j_plus_1 | ^ note: 'dcape_dz_j' was declared here [ 51%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o [ 52%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o /home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_wp2_wp3_module.F90:1927:12: 1927 | if ( abs(wp2_avg_before - wp2_avg_after) > epsilon(wp2_avg_after)*1000 ) then | ^ Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/CLUBB_core/advance_wp2_wp3_module.F90:1470:20: 1470 | wp2_avg_before, & | ^ note: 'wp2_avg_before' was declared here [ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o [ 53%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o [ 53%] Linking Fortran static library libclubb_core_lib.a [ 53%] Built target clubb_core_lib [ 53%] Building Fortran object src/CMakeFiles/text_writer_lib.dir/text_writer.F90.o [ 53%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [ 53%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/kinds.F90.o [ 53%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic_constants.f90.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/conice.F.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjmlt.F.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjtq.F.o [ 54%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o [ 54%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_physconst.F90.o [ 54%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa10g.F.o [ 55%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/AiryFunction.f90.o [ 55%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_planck.F90.o [ 55%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_local_means.F90.o [ 56%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloud_correlate.F90.o [ 56%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/newexp.F90.o [ 57%] Linking Fortran static library libtext_writer_lib.a [ 57%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa11g.F.o [ 58%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_rad.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12.F.o [ 58%] Built target text_writer_lib [ 58%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloudg.F.o [ 58%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12g.F.o [ 58%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic.f90.o [ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa13g.F.o [ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp1.F.o [ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp2.F.o [ 59%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa14g.F.o [ 59%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/rayle.F.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw.F.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_iter.F.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_ocastrndm.F90.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa15.F.o [ 60%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa17g.F.o [ 60%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_sel.F.o [ 61%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18.F.o [ 61%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_bs.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw.F.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18g.F.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19.F.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19g.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_iter.F.o [ 62%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw_ocastrndm.F90.o [ 62%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa20g.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa21g.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22.F.o [ 63%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gascon.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22g.F.o [ 63%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa25.F.o [ 64%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa26.F.o [ 65%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gases_ckd.F90.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27r.F.o [ 65%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa28.F.o [ 66%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa5g.F.o [ 66%] Building Fortran object 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src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/gamma.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmcol.F.o [ 68%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqi.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqw.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qsatvi.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/qtadj.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/slope.F.o [ 69%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqg.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqi.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqr.F.o [ 70%] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqs.F.o [ 70%] Linking Fortran static library libcoamps_lib.a [ 70%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_utilities.F90.o [ 70%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_means.F90.o [ 70%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_all_MM.F90.o [ 70%] Built target coamps_lib [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/PDF_integrals_covar.F90.o [ 71%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_swr.F.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_means.F90.o [ 71%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_lwr.F.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_Nrm_tendencies.F90.o [ 71%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o [ 72%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_variances.F90.o [ 72%] Linking Fortran static library libbugsrad_lib.a [ 72%] Linking Fortran static library libKK_microphys_lib.a [ 72%] Built target bugsrad_lib [ 72%] Built target KK_microphys_lib [ 72%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o [ 72%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/parameters_silhs.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/est_kessler_microphys_module.F90.o [ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/generate_uniform_sample_module.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/math_utilities.F90.o [ 74%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o /home/jenkins/workspace/clubb_restart/src/SILHS/silhs_importance_sample_module.F90:642:62: 637 | do category=1, num_importance_categories | 2 ...... 642 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o [ 75%] Linking Fortran static library libmorrison_microphys_lib.a [ 75%] Built target morrison_microphys_lib /home/jenkins/workspace/clubb_restart/src/SILHS/latin_hypercube_driver_module.F90:1638:10: 1638 | if ( X_u_chi(sample) < (one - cloud_frac_i) ) then | ^ Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/SILHS/latin_hypercube_driver_module.F90:1620:18: 1620 | cloud_frac_i | ^ note: 'cloud_frac_i' was declared here [ 75%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o [ 75%] Linking Fortran static library libsilhs_lib.a [ 75%] Built target silhs_lib [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o [ 75%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o [ 75%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o [ 76%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [ 76%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o [ 91%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o [ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o /home/jenkins/workspace/clubb_restart/src/Benchmark_cases/bomex.F90:22:48: 22 | gr, rtm, l_readiopdata, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o [ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o [ 94%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o [ 95%] Linking Fortran static library libbenchmark_cases_lib.a [ 95%] Built target benchmark_cases_lib [ 95%] Linking Fortran static library libG_unit_test_lib.a [ 95%] Built target G_unit_test_lib [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [ 96%] Linking Fortran static library libmicrophys_lib.a [ 96%] Built target microphys_lib [ 96%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [ 98%] Linking Fortran executable G_unit_tests [ 98%] Built target G_unit_tests [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o /home/jenkins/workspace/clubb_restart/src/clubb_driver.F90:5542:76: 5542 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver.F90:255:28: 255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) ) | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [ 98%] Linking Fortran static library libclubb_driver_lib.a [ 98%] Built target clubb_driver_lib [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [ 98%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [ 98%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:273:14: 273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:278:14: 278 | if ( any( test_correlation /= reference_correlation ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:283:14: 283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:288:14: 288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:293:14: 293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:512:14: 512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:521:14: 521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:520:14: 520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:519:14: 519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:518:14: 518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:517:14: 517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:431:14: 431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:371:14: 371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:370:14: 370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:369:14: 369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:368:14: 368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:367:14: 367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [100%] Linking Fortran executable clubb_thread_test [100%] Linking Fortran executable clubb_standalone [100%] Linking Fortran executable clubb_driver_test [100%] Linking Fortran executable clubb_standalone_loss [100%] Built target clubb_thread_test [100%] Built target clubb_standalone [100%] Built target clubb_driver_test [100%] Built target clubb_standalone_loss [100%] Linking Fortran executable clubb_loss_driver_test [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [100%] Built target clubb_loss_driver_test [100%] Linking Fortran executable clubb_tuner [100%] Built target clubb_tuner Install the project... -- Install configuration: "Release" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_tuner -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/G_unit_tests -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_thread_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_driver_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone_loss -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_loss_driver_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. [Pipeline] catchError [Pipeline] { [Pipeline] sh + python3 tests/run_restart_test.py rico_silhs Installing uv 0.11.32 in /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_restart/.venv-python Using CPython 3.12.3 interpreter at: /usr/bin/python3.12 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing python requirements into /home/jenkins/workspace/clubb_restart/.venv-python Using Python 3.12.3 environment at: .venv-python Resolved 12 packages in 306ms Downloading numpy (16.0MiB) Downloading pygments (1.2MiB) Downloading cftime (1.6MiB) Downloading netcdf4 (10.1MiB) Downloading meson (1.1MiB) Downloaded cftime Downloaded netcdf4 Downloaded meson Downloaded pygments Downloaded numpy Prepared 12 packages in 527ms Installed 12 packages in 75ms + certifi==2026.7.22 + cftime==1.6.6.1 + iniconfig==2.3.1 + meson==1.12.1 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pluggy==1.7.0 + pygments==2.21.0 + pytest==9.1.1 + tabulate==0.10.0 Ready: /home/jenkins/workspace/clubb_restart/.venv-python/bin/python Running standard rico_silhs case... Done! Running restart rico_silhs case from halfway point... Done! Results bit-for-bit. [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } [ 77%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o [ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [ 77%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o [ 78%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [ 79%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o /home/jenkins/workspace/clubb_restart/src/Numerical_recipes/ran_state.f90:8:59: 8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1 | 1 Warning: Integer outside symmetric range implied by Standard Fortran at (1) [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [ 80%] Linking Fortran static library libnumerical_recipes_lib.a [ 80%] Built target numerical_recipes_lib [ 80%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [ 80%] Linking Fortran static library libradiation_lib.a [ 80%] Built target radiation_lib [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1470:21: 1470 | if( (bmnth>2).and. isLeapYear(byear) ) jday = jday + 1 | 1 Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1492:18: 1492 | if(i==2.and.isLeapYear(iyear)) days_this_month = days_this_month + 1 | 1 Warning: Impure function 'isleapyear' at (1) might not be evaluated [-Wfunction-elimination] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1038:15: 1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1040:15: 1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1042:15: 1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1045:15: 1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1047:15: 1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1049:15: 1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:356:13: 356 | if( ANY(Ts_in == 0.0) ) then | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:620:12: 620 | if(T_in(i,nlev+1)/=missing_value) then | 1 Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:636:12: 636 | if(T_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:638:12: 638 | if(q_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:640:12: 640 | if(u_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:642:12: 642 | if(v_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:647:15: 647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:651:15: 651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:658:12: 658 | if(ug_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:660:12: 660 | if(vg_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1252:42: 1252 | character dim_name*( NF90_MAX_NAME ) | 1 Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:33: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:43: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1254:46: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1237:60: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1237:54: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1238:23: 1238 | var, use_NF90_REAL, status, required) | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:1167:67: 1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, & | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:751:51: 751 | get_add_surface_data, ntime, & | 1 Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:750:81: 750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, & | 1 Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:290:32: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:290:38: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:291:19: 291 | integer :: varID, NCID | 1 Warning: Unused variable 'varid' declared at (1) [-Wunused-variable] [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o [ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o /home/jenkins/workspace/clubb_restart/src/Input_fields/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:786:28: 786 | shf_in(:) = missing_value | ^ Warning: 'shf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:34: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'shf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.offset' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].lbound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:787:28: 787 | lhf_in(:) = missing_value | ^ Warning: 'lhf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:45: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'lhf_in' declared here /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:788:31: 788 | tausrf_in(:) = missing_value | ^ Warning: 'tausrf_in.dim[0].ubound' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_core/readiopdata_core_module.F90:761:59: 761 | real, allocatable :: shf_in(:), lhf_in(:), tausrf_in(:), tmp_srf(:), Tg_in(:) | ^ note: 'tausrf_in.dim[0].ubound' was declared here [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:260:16: 260 | integer :: k | 1 Warning: Unused variable 'k' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:264:17: 264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s] | 1 Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:243:31: 243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing ) | 1 Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:285:47: 285 | thlm_forcing(1:nlevels) = dtls(1:nlevels,1) | ^ Warning: 'nlevels' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/readiopdata_module.F90:258:22: 258 | integer :: nlevels | ^ note: 'nlevels' was declared here [ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:57:8: 57 | use input_names, only: & | 1 Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:165:13: 165 | p_in_Pa, & ! Pressure [Pa] | 1 Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:160:8: 160 | rt, & ! Total water mixing ratio sounding [kg/kg] | 1 Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:166:10: 166 | subs ! Vertical velocity sounding [m/s or Pa/s] | 1 Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:159:11: 159 | theta, & ! Liquid potential temperature sounding [K] | 1 Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:161:7: 161 | u, & ! u wind sounding [m/s] | 1 Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:163:8: 163 | ug, & ! u geostrophic wind sounding [m/s] | 1 Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:162:7: 162 | v, & ! v wind sounding [m/s] | 1 Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:164:8: 164 | vg, & ! v geostrophic wind sounding [m/s] | 1 Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] Done! Running restart bomex case from halfway point... /home/jenkins/workspace/clubb_restart/src/Input_fields/sounding.F90:158:7: 158 | z, & ! Altitude [m] | 1 Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [ 83%] Linking Fortran static library libinput_fields_lib.a [ 83%] Built target input_fields_lib [ 83%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o [ 83%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o /home/jenkins/workspace/clubb_restart/src/Microphys/ice_dfsn_module.F90:282:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_restart/src/Microphys/ice_dfsn_module.F90:296:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o [ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o [ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o [ 85%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [ 85%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o [ 85%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o [ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [ 86%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [ 87%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [ 87%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o [ 87%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [ 87%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [ 87%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [ 88%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/cubic_solve_tests.F90.o [ 88%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/cubic_solve_tests.F90:179:16: 179 | if ( any( aimag( roots_cmp(k,:) ) /= zero ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:407:27: 407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:406:22: 406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:462:22: 462 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:221:27: 221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:220:22: 220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/fill_holes_tests.F90:275:22: 275 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [ 88%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o [ 89%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o [ 89%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o [ 90%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o [ 90%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [ 90%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [ 90%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [ 91%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [ 91%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/mu_sigma_hm_tests.F90:511:17: 511 | if ( any( .not. l_pass_test_3 ) ) then | ^ Warning: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' may be used uninitialized [-Wmaybe-uninitialized] /home/jenkins/workspace/clubb_restart/src/G_unit_test_types/mu_sigma_hm_tests.F90:137:19: 137 | l_pass_test_3, & ! Flag for passing test 3 | ^ note: 'MEM[(logical(kind=4)[1] *)&l_pass_test_3]' was declared here [ 91%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [ 92%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o [ 92%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o Done! Results bit-for-bit. [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // withEnv [Pipeline] } Running on Jenkins in /home/jenkins/workspace/clubb_restart [Pipeline] // node [Pipeline] } [Pipeline] { [Pipeline] // stage [Pipeline] } [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_restart # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 09499c45d0ef25810f48bbd43c8f92afa1497caa (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 09499c45d0ef25810f48bbd43c8f92afa1497caa # timeout=10 Commit message: "Consolidate CLUBB workflows into skills (#1394)" [Pipeline] withEnv [Pipeline] { [Pipeline] catchError [Pipeline] { [Pipeline] sh + python3 tests/run_restart_test.py rico_silhs -jax -max_iters 74 -dt_main 60 -dt_rad 60 -tout 60 -multicol C8/0.2:0.8/2 -override stats_tsamp=60.,lh_sequence_length=3,l_lh_importance_sampling=.false. Installing uv 0.11.32 in /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_restart/.venv-python Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB) Downloaded cpython-3.12.13-linux-x86_64-gnu (download) Using CPython 3.12.13 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing python requirements into /home/jenkins/workspace/clubb_restart/.venv-python Using Python 3.12.13 environment at: .venv-python Resolved 12 packages in 283ms Downloading pygments (1.2MiB) Downloading meson (1.1MiB) Downloading netcdf4 (10.1MiB) Downloading numpy (16.0MiB) Downloading cftime (1.6MiB) Downloaded cftime Downloaded netcdf4 Downloaded meson Downloaded pygments Downloaded numpy Prepared 12 packages in 661ms Installed 12 packages in 32ms + certifi==2026.7.22 + cftime==1.6.6.1 + iniconfig==2.3.1 + meson==1.12.1 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pluggy==1.7.0 + pygments==2.21.0 + pytest==9.1.1 + tabulate==0.10.0 Ready: /home/jenkins/workspace/clubb_restart/.venv-python/bin/python Running standard rico_silhs case... [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [ 93%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o [ 93%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o /home/jenkins/workspace/clubb_restart/src/Benchmark_cases/bomex.F90:22:48: 22 | gr, rtm, l_readiopdata, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [ 95%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o [ 95%] Linking Fortran static library libbenchmark_cases_lib.a [ 95%] Built target benchmark_cases_lib [ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [ 95%] Linking Fortran static library libG_unit_test_lib.a [ 95%] Built target G_unit_test_lib [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [ 96%] Linking Fortran static library libmicrophys_lib.a [ 96%] Built target microphys_lib [ 96%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [ 98%] Linking Fortran executable G_unit_tests [ 98%] Built target G_unit_tests [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o /home/jenkins/workspace/clubb_restart/src/clubb_driver.F90:5542:76: 5542 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver.F90:255:28: 255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) ) | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [ 98%] Linking Fortran static library libclubb_driver_lib.a [ 98%] Built target clubb_driver_lib [ 98%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [ 98%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [ 98%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [ 98%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:273:14: 273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:278:14: 278 | if ( any( test_correlation /= reference_correlation ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:283:14: 283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:288:14: 288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:293:14: 293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:512:14: 512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:521:14: 521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:520:14: 520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:519:14: 519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:518:14: 518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:517:14: 517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:431:14: 431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:371:14: 371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:370:14: 370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:369:14: 369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. & | 1 Done! Running restart rico_silhs case from halfway point... Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:368:14: 368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_restart/src/clubb_loss_driver_test.F90:367:14: 367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [100%] Linking Fortran executable clubb_thread_test [100%] Linking Fortran executable clubb_standalone [100%] Linking Fortran executable clubb_driver_test [100%] Linking Fortran executable clubb_standalone_loss [100%] Built target clubb_thread_test [100%] Built target clubb_standalone [100%] Built target clubb_driver_test [100%] Built target clubb_standalone_loss [100%] Linking Fortran executable clubb_loss_driver_test [100%] Built target clubb_loss_driver_test [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [100%] Linking Fortran executable clubb_tuner [100%] Built target clubb_tuner Install the project... -- Install configuration: "Release" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_tuner -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/G_unit_tests -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_thread_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_driver_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone_loss -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib" -- Installing: /home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_loss_driver_test -- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_restart/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. [Pipeline] catchError [Pipeline] { [Pipeline] sh + python3 tests/run_restart_test.py bomex -multicol 4 Installing uv 0.11.32 in /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_restart/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_restart/.venv-python Using CPython 3.12.3 interpreter at: /usr/bin/python3.12 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing python requirements into /home/jenkins/workspace/clubb_restart/.venv-python Using Python 3.12.3 environment at: .venv-python Resolved 12 packages in 400ms Downloading numpy (16.0MiB) Downloading meson (1.1MiB) Downloading pygments (1.2MiB) Downloading netcdf4 (10.1MiB) Downloading cftime (1.6MiB) Downloaded cftime Downloaded meson Downloaded netcdf4 Downloaded pygments Downloaded numpy Prepared 12 packages in 2.19s Installed 12 packages in 47ms + certifi==2026.7.22 + cftime==1.6.6.1 + iniconfig==2.3.1 + meson==1.12.1 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pluggy==1.7.0 + pygments==2.21.0 + pytest==9.1.1 + tabulate==0.10.0 Ready: /home/jenkins/workspace/clubb_restart/.venv-python/bin/python Running standard bomex case... Done! Running restart bomex case from halfway point... Done! Results bit-for-bit. [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } Done! Results bit-for-bit. [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // parallel [Pipeline] } [Pipeline] // stage [Pipeline] End of Pipeline Finished: SUCCESS