Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl,
netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ bash tests/run_pytests.sh -unit --junitxml=/home/jenkins/workspace/clubb_python/output/tests/pytests/unit.xml --durations=10
============================= test session starts ==============================
platform linux -- Python 3.12.13, pytest-9.1.1, pluggy-1.6.0
rootdir: /home/jenkins/workspace/clubb_python
collected 273 items
utilities/pytests/test_clubb_settings_resolution.py .......... [ 3%]
utilities/pytests/test_create_case_namelist.py ......................... [ 12%]
............ [ 17%]
utilities/pytests/test_create_multi_col_params.py ... [ 18%]
utilities/pytests/test_output_paths.py ..... [ 20%]
utilities/pytests/test_run_script_arguments.py .............. [ 25%]
utilities/pytests/test_settings_rules.py ................. [ 31%]
utilities/pytests/test_stats_json_to_namelist.py ......... [ 34%]
utilities/pytests/test_time_clubb.py ....................... [ 43%]
utilities/pytests/test_timing_profiles.py ....... [ 45%]
tuner/pytests/test_adam_baselines.py ............ [ 50%]
tuner/pytests/test_parameter_ranges.py ...... [ 52%]
tuner/pytests/test_presets.py ........... [ 56%]
tuner/pytests/test_tuning_strategy.py .................................. [ 68%]
........ [ 71%]
tuner/pytests/test_workspaces.py ...... [ 73%]
tests/pytests/test_bindiff_report.py .... [ 75%]
tests/pytests/test_column_mirror.py .................................... [ 88%]
..................... [ 96%]
tests/pytests/test_compile_install_aliases.py .. [ 97%]
tests/pytests/test_jax_compare_forwarding.py ...... [ 99%]
tests/pytests/test_run_clubb_conv_test.py .. [100%]
=============================== warnings summary ===============================
tests/pytests/test_bindiff_report.py::test_json_reports_paths_logs_and_exclusive_variable_categories
tests/pytests/test_bindiff_report.py::test_json_reports_paths_logs_and_exclusive_variable_categories
/home/jenkins/workspace/clubb_python/tests/pytests/test_bindiff_report.py:37: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
nc.createVariable("shape", "f8", ("time", "col"))[:] = np.ones((2, 2 if right else 1))
tests/pytests/test_column_mirror.py: 28 warnings
/home/jenkins/workspace/clubb_python/.venv-python/lib/python3.12/site-packages/numpy/ma/core.py:3524: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
super(MaskedArray, type(self)).shape.__set__(self, shape)
tests/pytests/test_column_mirror.py::test_runner_detects_first_column_state_leak[separator0-True]
tests/pytests/test_column_mirror.py::test_runner_detects_first_column_state_leak[separator1-True]
tests/pytests/test_column_mirror.py::test_diff_copies_align_raw_values_and_parameters_without_editing_originals
tests/pytests/test_column_mirror.py::test_diff_copies_align_raw_values_and_parameters_without_editing_originals
tests/pytests/test_column_mirror.py::test_diff_copies_align_raw_values_and_parameters_without_editing_originals
tests/pytests/test_column_mirror.py::test_saved_output_comparison_and_tolerance
tests/pytests/test_column_mirror.py::test_saved_output_comparison_and_tolerance
/home/jenkins/workspace/clubb_python/tests/check_mirrored_multi_col_output.py:197: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
var[:] = np.flip(var[:], axis=var.dimensions.index("col"))
tests/pytests/test_column_mirror.py::test_diff_copies_align_raw_values_and_parameters_without_editing_originals
/home/jenkins/workspace/clubb_python/tests/pytests/test_column_mirror.py:131: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
ds.createVariable('clubb_params', 'f8', ('param', 'col'))[:] = [[.8, .5, .2]]
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
- generated xml file: /home/jenkins/workspace/clubb_python/output/tests/pytests/unit.xml -
============================= slowest 10 durations =============================
1.64s call tests/pytests/test_column_mirror.py::test_incremental_build_reuses_objects_and_picks_up_source_changes
1.04s call utilities/pytests/test_time_clubb.py::test_continue_on_error_completes_remaining_sweep_points
0.83s call utilities/pytests/test_time_clubb.py::test_live_results_have_workload_metadata_before_benchmark_finishes
0.71s call tests/pytests/test_column_mirror.py::test_runner_detects_first_column_state_leak[separator0-True]
0.70s call utilities/pytests/test_time_clubb.py::test_failure_preserves_completed_and_failed_points
0.68s call tests/pytests/test_column_mirror.py::test_runner_detects_first_column_state_leak[separator1-True]
0.67s call utilities/pytests/test_time_clubb.py::test_fake_runner_is_concurrent_and_writes_isolated_csv_rows
0.62s call tests/pytests/test_column_mirror.py::test_failed_run_does_not_compare_stale_output
0.60s call utilities/pytests/test_time_clubb.py::test_warmups_are_aggregated_and_dash_ignores_them
0.49s call utilities/pytests/test_time_clubb.py::test_failure_console_includes_namelist_error_without_launching_model
====================== 273 passed, 38 warnings in 11.83s =======================
