+ run_scripts/run_scm_all.py -workers 4 -cases arm atex bomex clex9_oct14 dycoms2_rf01 dycoms2_rf01_fixed_sst dycoms2_rf02_do dycoms2_rf02_ds dycoms2_rf02_nd dycoms2_rf02_so fire gabls2 gabls3_night jun25_altocu lba neutral nov11_altocu rico rico_silhs wangara -output_dir jax_vs_fortran/fortran_6e48f97
Performing manual-cases run
Using 4 process(es)
Cases to run: arm, atex, bomex, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3_night, jun25_altocu, lba, neutral, nov11_altocu, rico, rico_silhs, wangara
COMPLETE -- bomex
COMPLETE -- atex
COMPLETE -- arm
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- clex9_oct14
COMPLETE -- dycoms2_rf01
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- fire
COMPLETE -- dycoms2_rf02_so
COMPLETE -- dycoms2_rf02_do
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- gabls3_night
COMPLETE -- jun25_altocu
COMPLETE -- neutral
COMPLETE -- nov11_altocu
COMPLETE -- rico
COMPLETE -- wangara
COMPLETE -- rico_silhs
COMPLETE -- lba
COMPLETE -- gabls2
=================== Runs Complete ===================
All cases ran to completion.
+ run_scripts/run_scm_all.py -jax=cpu -workers 4 -cases arm atex bomex clex9_oct14 dycoms2_rf01 dycoms2_rf01_fixed_sst dycoms2_rf02_do dycoms2_rf02_ds dycoms2_rf02_nd dycoms2_rf02_so fire gabls2 gabls3_night jun25_altocu lba neutral nov11_altocu rico rico_silhs wangara -output_dir jax_vs_fortran/jax_6e48f97
Performing manual-cases run
Using 4 process(es)
Cases to run: arm, atex, bomex, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3_night, jun25_altocu, lba, neutral, nov11_altocu, rico, rico_silhs, wangara
COMPLETE -- bomex
COMPLETE -- atex
COMPLETE -- dycoms2_rf01
COMPLETE -- arm
COMPLETE -- clex9_oct14
COMPLETE -- dycoms2_rf01_fixed_sst
COMPLETE -- dycoms2_rf02_do
COMPLETE -- dycoms2_rf02_nd
COMPLETE -- dycoms2_rf02_so
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- fire
COMPLETE -- gabls3_night
COMPLETE -- gabls2
COMPLETE -- jun25_altocu
COMPLETE -- neutral
COMPLETE -- nov11_altocu
COMPLETE -- lba
COMPLETE -- wangara
COMPLETE -- rico_silhs
COMPLETE -- rico
=================== Runs Complete ===================
All cases ran to completion.
+ python3 postprocessing/pyplotgen/pyplotgen.py -les -clubb output/jax_vs_fortran/fortran_6e48f97 output/jax_vs_fortran/jax_6e48f97 -output_dir output/6e48f97_jax_vs_fortran
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_plots/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_plots/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_plots/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing plot requirements into /home/jenkins/workspace/clubb_plots/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 25 packages in 2.66s
Building fpdf==1.7.2
Downloading fonttools (5.2MiB)
Downloading kiwisolver (1.4MiB)
Downloading pygments (1.2MiB)
Downloading pandas (10.3MiB)
Downloading pillow (6.6MiB)
Downloading cftime (1.6MiB)
Downloading opencv-python-headless (59.1MiB)
Downloading netcdf4 (10.1MiB)
Downloading matplotlib (8.4MiB)
Downloading numpy (16.0MiB)
Downloading meson (1.1MiB)
Built fpdf==1.7.2
Downloaded kiwisolver
Downloaded cftime
Downloaded meson
Downloaded pygments
Downloaded fonttools
Downloaded pillow
Downloaded matplotlib
Downloaded netcdf4
Downloaded pandas
Downloaded numpy
Downloaded opencv-python-headless
Prepared 25 packages in 6.30s
Installed 25 packages in 435ms
+ certifi==2026.7.22
+ cftime==1.6.6.1
+ contourpy==1.4.0
+ cycler==0.12.1
+ fonttools==4.67.0
+ fpdf==1.7.2
+ iniconfig==2.3.1
+ kiwisolver==1.5.1
+ matplotlib==3.10.9
+ meson==1.12.1
+ netcdf4==1.7.5
+ ninja==1.13.2
+ numpy==2.5.4
+ opencv-python-headless==4.14.0.94
+ packaging==26.3
+ pandas==3.0.6
+ pillow==12.3.0
+ pluggy==1.7.0
+ pygments==2.21.0
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ seaborn==0.13.2
+ six==1.17.0
+ tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_plots/.venv-python/bin/python
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/config/VariableGroupBase.py:480: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/config/VariableGroupBase.py:496: SyntaxWarning: invalid escape sequence '\m'
'axis_title': 'bv_freq_sqd_splat [$\mathrm{1/s^2}$]',
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/src/interoperability.py:41: SyntaxWarning: invalid escape sequence '\$'
return re.sub("\$[^$]*\$",'',string)
/home/jenkins/workspace/clubb_plots/postprocessing/pyplotgen/src/DataReader.py:590: SyntaxWarning: invalid escape sequence '\m'
units = "$\mathrm{" + raw_units + "}$" # $'s are used to format equations
*******************************************
Welcome to PyPlotGen.
*******************************************
Checking for model benchmark output...
Benchmark output found in /home/jenkins/workspace/clubb_plots/input/les_and_clubb_benchmark_runs/.
-------------------------------------------
Running...
----------
NOTE: If processing multiple cases (ARM, BOMEX, etc.) with multithreading,
the total number of panels to be processed may increase as threads complete
and begin processing new cases.
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-------------------------------------------
ARM: SUCCESS --> Images found.
ATEX: SUCCESS --> Images found.
BOMEX: SUCCESS --> Images found.
CLEX9_OCT14: SUCCESS --> Images found.
DYCOMS2_RF01: SUCCESS --> Images found.
DYCOMS2_RF01_FIXED_SST: SUCCESS --> Images found.
DYCOMS2_RF02_DO: SUCCESS --> Images found.
DYCOMS2_RF02_DS: SUCCESS --> Images found.
DYCOMS2_RF02_ND: SUCCESS --> Images found.
DYCOMS2_RF02_SO: SUCCESS --> Images found.
FIRE: SUCCESS --> Images found.
GABLS2: SUCCESS --> Images found.
GABLS2_NIGHTLY: SUCCESS --> Images found.
GABLS3_NIGHT: SUCCESS --> Images found.
JUN25_ALTOCU: SUCCESS --> Images found.
LBA: SUCCESS --> Images found.
NEUTRAL: SUCCESS --> Images found.
NOV11_ALTOCU: SUCCESS --> Images found.
RICO: SUCCESS --> Images found.
RICO_SILHS: SUCCESS --> Images found.
WANGARA: SUCCESS --> Images found.
-------------------------------------------
Output can be viewed at file:///home/jenkins/workspace/clubb_plots/output/6e48f97_jax_vs_fortran/index.html with a web browser
Pyplotgen ran in 175 seconds.
See error.log in the output folder for detailed info including warnings.
error.log messages include:
26-10-18 05:40:45.873 proc_id: 1557683 Warning, unknown model detected. PyPlotgen doesn't know where this netcdf dependent_data is from. <class 'netCDF4.Dataset'>
