Started by an SCM change Obtained jenkins_tests/clubb_nvhpc_single_prec_build/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on nelson in /home/jenkins/workspace/clubb_nvhpc_single_prec_build [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_nvhpc_single_prec_build # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 034f61908b84f2574a06cc7da3db70d50696e69d (refs/remotes/origin/master) Commit message: "The old mixing length calculation seems to be making dycoms2_rf02 fail when using the bicgstab solver. This case was always unstable with bicgstab, so it seemed more like luck before that it was passing. This change just removes the failed output data to prevent pyplotgen from crashing" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 034f61908b84f2574a06cc7da3db70d50696e69d # timeout=10 > git rev-list --no-walk 765ae7c30cda88e01b27cd1ee4277d54e4fcb752 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -precision single -- Configuring for CPU build -- Configuring for CPU build -- The Fortran compiler identification is NVHPC 24.3.0 -- The C compiler identification is NVHPC 24.3.0 -- The CXX compiler identification is NVHPC 24.3.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/nvhpc-24.3-empnja5cpzevpwiw664fzpypwmcsyvh2/Linux_x86_64/24.3/compilers/bin/nvc++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with single precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/include -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: NetCDF_C_INCLUDE_DIR NetCDF_C_LIBRARY NetCDF_Fortran_INCLUDE_DIR NetCDF_Fortran_LIBRARY -- Build files have been written to: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/build/nvhpc_PRECsingle Using inferred toolchain file: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/cmake/toolchains/linux_x86_64_nvhpc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/build/nvhpc_PRECsingle Setting CLUBB installation dir: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle about to cmnake /home/jenkins/workspace/clubb_nvhpc_single_prec_build/build/nvhpc_PRECsingle Running CMake configure... 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src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o [ 99%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [100%] Linking Fortran executable clubb_thread_test [100%] Linking Fortran executable clubb_driver_test [100%] Linking Fortran executable clubb_standalone [100%] Linking Fortran executable clubb_standalone_loss [100%] Built target clubb_thread_test [100%] Built target clubb_driver_test [100%] Built target clubb_standalone [100%] Built target clubb_standalone_loss [100%] Linking Fortran executable clubb_loss_driver_test [100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [100%] Built target clubb_loss_driver_test [100%] Linking Fortran executable clubb_tuner [100%] Built target clubb_tuner Install the project... -- Install configuration: 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"/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_thread_test -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_thread_test" to "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_standalone -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_standalone" to "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_driver_test" to "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_standalone_loss -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/lib" -- Installing: /home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_loss_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib:/home/jenkins/workspace/clubb_nvhpc_single_prec_build/install/nvhpc_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/nvhpc-24.3/netcdf-fortran-4.5.3-4jp2ujpzfvvhktuooajkk32l4eysemmt/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types [92mBuild completed successfully, and all source code checks passed.[0m [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) [Pipeline] sh + run_scripts/run_scm_all.py Performing standard run Using 8 process(es) Cases to run: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara COMPLETE -- bomex COMPLETE -- atex COMPLETE -- arm COMPLETE -- clex9_nov02 COMPLETE -- dycoms2_rf01 COMPLETE -- clex9_oct14 COMPLETE -- dycoms2_rf01_fixed_sst COMPLETE -- dycoms2_rf02_nd COMPLETE -- dycoms2_rf02_so COMPLETE -- dycoms2_rf02_do COMPLETE -- dycoms2_rf02_ds COMPLETE -- fire COMPLETE -- cgils_s12 COMPLETE -- astex_a209 COMPLETE -- cgils_s11 COMPLETE -- cgils_s6 COMPLETE -- gabls3_night COMPLETE -- jun25_altocu COMPLETE -- gabls3 COMPLETE -- lba COMPLETE -- mpace_b COMPLETE -- mpace_b_silhs COMPLETE -- nov11_altocu COMPLETE -- wangara COMPLETE -- rico_silhs COMPLETE -- rico COMPLETE -- gabls2 COMPLETE -- twp_ice COMPLETE -- mpace_a COMPLETE -- arm_97 COMPLETE -- mc3e =================== Runs Complete =================== All cases ran to completion. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS