Started by user <a href='/jenkins/user/huebler' class='jenkins-table__link model-link model-link--float'>Gunther Huebler</a>
Checking out git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> into /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/clubb_new_stats^{commit} # timeout=10
Checking out Revision 8cf7a0b6d54dba457dc99ee7c8c5d9e734041a9e (refs/remotes/origin/clubb_new_stats)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 8cf7a0b6d54dba457dc99ee7c8c5d9e734041a9e # timeout=10
Commit message: "Jenkins script updateS"
 &gt; git rev-list --no-walk 766a0b6ac3a4783eefdf5ef8e1cf326f8f5c6ed1 # timeout=10
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/(built-in)/' class='jenkins-table__link model-link model-link--float'>Jenkins</a> in /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/clubb_new_stats^{commit} # timeout=10
Checking out Revision 8cf7a0b6d54dba457dc99ee7c8c5d9e734041a9e (refs/remotes/origin/clubb_new_stats)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 8cf7a0b6d54dba457dc99ee7c8c5d9e734041a9e # timeout=10
Commit message: "Jenkins script updateS"
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Modify Config Flags">[Pipeline] { (Modify Config Flags)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in
</span><span class="pipeline-new-node" nodeId="15" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-15">+ sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in
</span><span class="pipeline-new-node" nodeId="16" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-16">+ sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in
</span><span class="pipeline-new-node" nodeId="17" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-17">+ sed -i 's:time_final.*:time_final = 87600:g' input/case_setups/cobra_model.in
</span><span class="pipeline-new-node" nodeId="18" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-18">+ sed -i 's:time_final.*:time_final = 3000:g' input/case_setups/rico_silhs_model.in
</span><span class="pipeline-new-node" nodeId="19" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-19">+ sed -i 's:set(GPU_DEFINITIONS CLUBB_GPU CUDA):set(GPU_DEFINITIONS CLUBB_GPU):g' cmake/toolchains/linux_x86_64_nvfortran.cmake
</span><span class="pipeline-new-node" nodeId="20" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-20">+ run_scripts/create_multi_col_params.py -n 32 -param_file input/tunable_parameters/tunable_parameters.in -mode dup_tweak
Duplicating then tweaking params
 - Initial values file: 'input/tunable_parameters/tunable_parameters.in'
 - Duplicating '32' times and tweaking: ['C7', 'C11']
Writing to 'clubb_params_multi_col.in':
 - ngrdcol = 32
</span><span class="pipeline-new-node" nodeId="21" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="22" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="24" startId="24" enclosingId="23" label="Compile CPU">[Pipeline] { (Compile CPU)
</span><span class="pipeline-new-node" nodeId="25" enclosingId="24">[Pipeline] sh
</span><span class="pipeline-node-25">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py
-- Configuring for CPU build
-- Configuring for CPU build
-- The Fortran compiler identification is NVHPC 24.3.0
-- The C compiler identification is NVHPC 24.3.0
-- The CXX compiler identification is NVHPC 24.3.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/nvhpc-24.3-ym2ucux26iwkpvpcaph3ozu5oyjmahuk/Linux_x86_64/24.3/compilers/bin/nvfortran - skipped
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/nvhpc-24.3-ym2ucux26iwkpvpcaph3ozu5oyjmahuk/Linux_x86_64/24.3/compilers/bin/nvc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/nvhpc-24.3-ym2ucux26iwkpvpcaph3ozu5oyjmahuk/Linux_x86_64/24.3/compilers/bin/nvc++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiling with double precision
-- Found PkgConfig: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/pkgconf-2.2.0-5yfc5u2idq4y27sxxkurcul66iyq7axu/bin/pkg-config (found version "2.2.0") 
-- Checking for module 'netcdf-fortran'
--   Found netcdf-fortran, version 4.5.3
-- netcdf-fortran found via pkg-config
-- Include dirs: /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/include;/usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-c-4.9.2-shoyf5hca7dhntsditpk73vbwzstlhc3/include
-- Libraries:    netcdff
-- Derived NetCDFFortran_ROOT = /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/build/nvfortran_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/build/nvfortran_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/install/nvfortran_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/cmake/toolchains/linux_x86_64_nvfortran.cmake
about to cmnake /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/build/nvfortran_PRECdouble
Running CMake configure...
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[789/915] Linking Fortran static library src/SILHS/libsilhs_lib.a
[790/915] Generating Fortran dyndep file src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/Fortran.dd
[791/915] Generating Fortran dyndep file src/Radiation/CMakeFiles/radiation_lib.dir/Fortran.dd
[792/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o
[793/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o
[794/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o
[795/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o
[796/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o
[797/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o
[798/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o
[799/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o
[800/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o
[801/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o
[802/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o
[803/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o
[804/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o
[805/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o
[806/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o
[807/915] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o
[808/915] Linking Fortran static library src/Numerical_recipes/libnumerical_recipes_lib.a
[809/915] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o
[810/915] Linking Fortran static library src/Radiation/libradiation_lib.a
[811/915] Generating Fortran dyndep file src/Input_fields/CMakeFiles/input_fields_lib.dir/Fortran.dd
[812/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o
[813/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o
[814/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o
[815/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o
[816/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_grads.F90.o
[817/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o
[818/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o
[819/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o
[820/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o
[821/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o
[822/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o
[823/915] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
[824/915] Linking Fortran static library src/Input_fields/libinput_fields_lib.a
[825/915] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd
[826/915] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd
[827/915] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd
[828/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o
[829/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o
[830/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o
[831/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o
[832/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o
[833/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o
[834/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o
[835/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o
[836/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o
[837/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o
[838/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o
[839/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[840/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
[841/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[842/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[843/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o
[844/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o
[845/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[846/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[847/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
NVFORTRAN-W-0435-Array declared with zero size (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/G_unit_test_types/spurious_source_test.F90: 221)
NVFORTRAN-W-0435-Array declared with zero size (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/G_unit_test_types/spurious_source_test.F90: 225)
NVFORTRAN-W-0435-Array declared with zero size (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/G_unit_test_types/spurious_source_test.F90: 278)
NVFORTRAN-W-0435-Array declared with zero size (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/G_unit_test_types/spurious_source_test.F90: 281)
[848/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o
[849/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[850/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o
[851/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
[852/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o
[853/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o
[854/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o
[855/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o
[856/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o
[857/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[858/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o
[859/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o
[860/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o
[861/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o
[862/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o
[863/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o
[864/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o
[865/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o
[866/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o
[867/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o
[868/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[869/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o
[870/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[871/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o
[872/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o
[873/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o
[874/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
[875/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o
[876/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o
[877/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o
[878/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o
[879/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o
[880/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[881/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[882/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[883/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[884/915] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[885/915] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a
[886/915] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
NVFORTRAN-W-0435-Array declared with zero size (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/G_unit_test_types/pdf_parameter_tests.F90: 413)
[887/915] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[888/915] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd
[889/915] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[890/915] Linking Fortran executable src/G_unit_tests
[891/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[892/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[893/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[894/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[895/915] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[896/915] Linking Fortran static library src/Microphys/libmicrophys_lib.a
[897/915] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd
[898/915] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/soil_vegetation.F90.o
[899/915] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[900/915] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
[901/915] Linking Fortran static library src/libclubb_driver_lib.a
[902/915] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd
[903/915] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd
[904/915] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd
[905/915] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd
[906/915] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
FAILED: src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o 
/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/nvhpc-24.3-ym2ucux26iwkpvpcaph3ozu5oyjmahuk/Linux_x86_64/24.3/compilers/bin/nvfortran -I/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src -I/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/build/nvfortran_PRECdouble/MOD -Mcache_align -Mbackslash -Mstandard  -O2 -Mstack_arrays -module MOD -noacc -c src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90-pp.f90 -o src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
NVFORTRAN-F-0004-Unable to open MODULE file netcdf.mod (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/clubb_driver_test.F90: 31)
NVFORTRAN/x86-64 Linux 24.3-0: compilation aborted
[907/915] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
FAILED: src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o 
/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/nvhpc-24.3-ym2ucux26iwkpvpcaph3ozu5oyjmahuk/Linux_x86_64/24.3/compilers/bin/nvfortran -I/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src -I/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/build/nvfortran_PRECdouble/MOD -Mcache_align -Mbackslash -Mstandard  -O2 -Mstack_arrays -module MOD -noacc -c src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90-pp.f90 -o src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
NVFORTRAN-F-0004-Unable to open MODULE file netcdf.mod (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/clubb_thread_test.F90: 29)
NVFORTRAN/x86-64 Linux 24.3-0: compilation aborted
[908/915] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
FAILED: src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o 
/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/nvhpc-24.3-ym2ucux26iwkpvpcaph3ozu5oyjmahuk/Linux_x86_64/24.3/compilers/bin/nvfortran -I/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src -I/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/build/nvfortran_PRECdouble/MOD -Mcache_align -Mbackslash -Mstandard  -O2 -Mstack_arrays -module MOD -noacc -c src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90-pp.f90 -o src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
NVFORTRAN-F-0004-Unable to open MODULE file netcdf.mod (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/clubb_standalone.F90: 26)
NVFORTRAN/x86-64 Linux 24.3-0: compilation aborted
[909/915] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
FAILED: src/CMakeFiles/clubb_tuner.dir/error.F90.o MOD/error.mod 
/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/nvhpc-24.3-ym2ucux26iwkpvpcaph3ozu5oyjmahuk/Linux_x86_64/24.3/compilers/bin/nvfortran -I/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src -I/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/build/nvfortran_PRECdouble/MOD -Mcache_align -Mbackslash -Mstandard  -O2 -Mstack_arrays -module MOD -noacc -c src/CMakeFiles/clubb_tuner.dir/error.F90-pp.f90 -o src/CMakeFiles/clubb_tuner.dir/error.F90.o
NVFORTRAN-F-0004-Unable to open MODULE file netcdf.mod (/home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/src/error.F90: 693)
NVFORTRAN/x86-64 Linux 24.3-0: compilation aborted
ninja: build stopped: subcommand failed.

Build failed. See /home/jenkins/workspace/clubb_nvhpc_gpu_vs_cpu_diffness_branch/build/nvfortran_PRECdouble/cmake_build_output.txt for details.
</span><span class="pipeline-new-node" nodeId="26" startId="24">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="27" startId="23">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="28" startId="28" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="29" startId="29" enclosingId="28" label="Run CPU">[Pipeline] { (Run CPU)
</span>Stage "Run CPU" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="30" enclosingId="29">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="31" startId="29">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="32" startId="28">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="33" startId="33" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="34" startId="34" enclosingId="33" label="Compile GPU_ACC">[Pipeline] { (Compile GPU_ACC)
</span>Stage "Compile GPU_ACC" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="35" enclosingId="34">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="36" startId="34">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="37" startId="33">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="38" startId="38" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="39" startId="39" enclosingId="38" label="Run GPU_ACC">[Pipeline] { (Run GPU_ACC)
</span>Stage "Run GPU_ACC" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="40" enclosingId="39">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="41" startId="39">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="42" startId="38">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="43" startId="43" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="44" startId="44" enclosingId="43" label="Compile GPU_OMP">[Pipeline] { (Compile GPU_OMP)
</span>Stage "Compile GPU_OMP" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="45" enclosingId="44">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="46" startId="44">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="47" startId="43">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="48" startId="48" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="49" startId="49" enclosingId="48" label="Run GPU_OMP">[Pipeline] { (Run GPU_OMP)
</span>Stage "Run GPU_OMP" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="50" enclosingId="49">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="51" startId="49">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="52" startId="48">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="53" startId="53" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="54" startId="54" enclosingId="53" label="Compare CPU vs ACC">[Pipeline] { (Compare CPU vs ACC)
</span>Stage "Compare CPU vs ACC" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="55" enclosingId="54">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="56" startId="54">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="57" startId="53">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="58" startId="58" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="59" startId="59" enclosingId="58" label="Compare CPU vs OMP">[Pipeline] { (Compare CPU vs OMP)
</span>Stage "Compare CPU vs OMP" skipped due to earlier failure(s)
<span class="pipeline-new-node" nodeId="60" enclosingId="59">[Pipeline] getContext
</span><span class="pipeline-new-node" nodeId="61" startId="59">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="62" startId="58">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="63" startId="63" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="64" startId="64" enclosingId="63" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="65" startId="65" enclosingId="64">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="66" startId="66" enclosingId="65">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="67" startId="66">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="68" startId="65">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="69" startId="64">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="70" startId="63">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="71" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="72" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="73" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="74" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="75" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE