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cleanup (#1301)

* BFB cleanup stuff

* Adding some helper routines

* More BFB changes

* More BFB changes

* More BFB changes

* More BFB changes

* Fixing python API and adding an agent file and a prompt to fix python API in the future.

* Updating scripts and improving formatting

* Updating some scripts and adding new jenkins test to compare the current branch vs master with flags

* Restoring BFBness when using l_lmm_stepping=.true. by reimplementing an existing bug...

* Making run_clubb_w_varying_flags.py not remove output, it's just unneccesary

* Simplifying script changes

* Jenkins script update

* Little consolidation of code in pdf_closure_driver

* Fixing python API

* Fixing parameterization_check formatting
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Also, the BFB with varying flags failed because flag set 1 changed to use the lapack solvers since the custom ones it set before are now default. RESOLVED:34c6bb07afb6e445f60ea87dcc632969086f9fa1
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</comment><date>2026-05-07 12:45:27 -0500</date><id>2fe6e56761356da5b20a7fba14c72ec69fdc9d02</id><msg>Switching default call to advance_clubb_core in python and jax drivers to use the python api version, rather than the python ported version.</msg><path><editType>edit</editType><file>clubb_python_driver/advance_clubb_to_end.py</file></path><path><editType>edit</editType><file>clubb_jax/advance_clubb_to_end.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>127</number><url>http://carson.math.uwm.edu/jenkins/job/clubb_nvhpc_gpu_column_mirror_test/127/</url></nextBuild><previousBuild><number>125</number><url>http://carson.math.uwm.edu/jenkins/job/clubb_nvhpc_gpu_column_mirror_test/125/</url></previousBuild></previousBuild></workflowRun>