Status
Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -debug -python
-- Compiling with double precision
-- SUCCESS: netcdf-fortran found.
--   -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so
--   -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include
-- ENABLE_F2PY=ON with USE_NetCDF=ON: reusing CMake-built CLUBB libraries
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_new_tuner_test/build/gcc_DEBUG_PRECdouble_PYTHON
Using inferred toolchain file: /home/jenkins/workspace/clubb_new_tuner_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_new_tuner_test/build/gcc_DEBUG_PRECdouble_PYTHON
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON
about to cmnake /home/jenkins/workspace/clubb_new_tuner_test/build/gcc_DEBUG_PRECdouble_PYTHON
Running CMake configure...
[0/1] Install the project...
-- Install configuration: "Debug"
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/libclubb_driver_lib.a
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/clubb_tuner
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/G_unit_tests
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/clubb_thread_test
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/clubb_standalone
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/clubb_driver_test
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/clubb_standalone_loss
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/clubb_loss_driver_test
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/libclubb_f2py_backend.so
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_f2py.cpython-310-x86_64-linux-gnu.so
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/_runtime_loader.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/clubb_api.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/radiation.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/__init__.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/lapack_wrap.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/advance_xp2_xpyp.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/lapack_interfaces.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/matrix_operations.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/stats_netcdf.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/pdf_closure.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/clip_explicit.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/turbulent_adv_pdf.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/advance_wp2_wp3.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/pos_definite_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/t_in_k_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/skx_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/new_tsdadg_pdf.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/pdf_parameter_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/penta_bicgstab_solver.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/numerical_check.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/advance_xp3.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/model_flags.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/remapping_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/grid_class.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/loss_driver.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/mean_adv.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/new_hybrid_pdf.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/new_hybrid_pdf_main.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/advance_xm_wpxp.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/calc_pressure.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/calendar.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/interpolation.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/stats_clubb_utilities.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/calc_roots.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/sigma_sqd_w_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/precipitation_fraction.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/saturation.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/nc_ncn_eqns.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/mixing_length.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/ly93_pdf.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/fill_holes.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/parameters_tunable.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/index_mapping.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/penta_lu_solver.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/tridiag_lu_solver.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/__init__.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/file_functions.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/sponge_layer_damping.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/diagnose_correlations_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/sfc_varnce_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/diffusion.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/new_pdf.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/err_info_type_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/advance_clubb_core.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/advance_windm_edsclrm.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/advance_helper.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/pdf_utilities.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/new_pdf_main.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/matrix_solver_wrapper.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/corr_varnce_module.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/error_code.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/mono_flux_limiter.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/CLUBB_core/array_index.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/string_conversion.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/prescribe_forcings.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/config_flags_converter.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/err_info.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/nu_vert_res_dep_converter.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/nu_vert_res_dep.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/grid_class.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/sclr_idx_converter.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/err_info_converter.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/config_flags.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/pdf_params.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/grid_class_converter.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/hm_metadata.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/__init__.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/sclr_idx.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/common.py
-- Up-to-date: /home/jenkins/workspace/clubb_new_tuner_test/install/gcc_DEBUG_PRECdouble_PYTHON/python/clubb_python/derived_types/pdf_params_converter.py
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types

[92mBuild completed successfully, and all source code checks passed.[0m