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CLUBB ticket #1223
* Removed renaming operators `=&gt;` from silhs_api_module
This just affected latin_hypercube_2D_output_api and stats_accumulate_lh_api.

* Removed definitions of wrapper subroutines from silhs_api_module
Removed wrappers est_kessler_microphys_api, lh_microphys_var_covar_driver_api, set_default_silhs_config_flags_api, initialize_silhs_config_flags_type_api, print_silhs_config_flags_api, latin_hypercube_2D_close_api from silhs_api_module.
</comment><date>2025-05-01 15:13:38 -0500</date><id>3a3e3d57af0db172255568b51e92976571b7ad42</id><msg>Removed renaming operators `=&gt;` and wrapper subroutines from silhs_api_module (#1240)</msg><path><editType>edit</editType><file>src/SILHS/parameters_silhs.F90</file></path><path><editType>edit</editType><file>src/SILHS/lh_microphys_var_covar_module.F90</file></path><path><editType>edit</editType><file>src/SILHS/silhs_api_module.F90</file></path><path><editType>edit</editType><file>src/estimate_scm_microphys_module.F90</file></path><path><editType>edit</editType><file>src/SILHS/latin_hypercube_driver_module.F90</file></path><path><editType>edit</editType><file>src/lh_microphys_driver_module.F90</file></path><path><editType>edit</editType><file>src/microphys_init_cleanup.F90</file></path><path><editType>edit</editType><file>src/pdf_hydromet_microphys_wrapper.F90</file></path><path><editType>edit</editType><file>src/SILHS/est_kessler_microphys_module.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName><id>noreply</id></culprit><inProgress>false</inProgress><nextBuild><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>85</buildNumber><marked><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><branch><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><branch><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><branch><SHA1>6912ae1620711773f96385ece3b9330fc73daf68</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#85</displayName><duration>549276</duration><estimatedDuration>1760728</estimatedDuration><fullDisplayName>clubb_monoflux_CPU_vs_GPU_diff #85</fullDisplayName><id>85</id><keepLog>false</keepLog><number>85</number><queueId>9459</queueId><result>SUCCESS</result><timestamp>1746262267057</timestamp><url>http://carson.math.uwm.edu/jenkins/job/clubb_monoflux_CPU_vs_GPU_diff/85/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_windm_edsclrm_module.F90</affectedPath><affectedPath>src/clubb_standalone.F90</affectedPath><affectedPath>src/clubb_driver.F90</affectedPath><affectedPath>src/CLUBB_core/grid_class.F90</affectedPath><affectedPath>src/time_dependent_input.F90</affectedPath><affectedPath>src/advance_microphys_module.F90</affectedPath><affectedPath>src/CLUBB_core/mono_flux_limiter.F90</affectedPath><affectedPath>run_scripts/run_scm_all.bash</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><affectedPath>src/CLUBB_core/advance_xp2_xpyp_module.F90</affectedPath><commitId>1e73c9c30c0b13eb0a0a5e0010ce9fd81c67c2f0</commitId><timestamp>1746207443000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Run scm fixes (#1244)

Fixed error output for run?scm?all.bash, added some missing error checks to CLUBB
CLUBB ticket #975

* Fixed error output issues for run_scm_all.bash
- Changed tail $TMP_OUT to cat $TMP_OUT so we can see the entire stderr output of CLUBB in the log
- Added `if allocated` check to subroutine finalize_t_dependent_forcings in time_dependent_input.F90 to avoid runtime errors
- Removed unnecessary write statement in clubb_standalone.F90

* Added missing err_code checks
- Added err_code checks so we don't get false negative error messages
</comment><date>2025-05-02 12:37:23 -0500</date><id>1e73c9c30c0b13eb0a0a5e0010ce9fd81c67c2f0</id><msg>Run scm fixes (#1244)</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>run_scripts/run_scm_all.bash</file></path><path><editType>edit</editType><file>src/clubb_driver.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/grid_class.F90</file></path><path><editType>edit</editType><file>src/advance_microphys_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mono_flux_limiter.F90</file></path><path><editType>edit</editType><file>src/time_dependent_input.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>src/clubb_standalone.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_w_flags_config_host_flags.json</affectedPath><commitId>9b42183b3b368cf7c079faf0a7b79eefc159f901</commitId><timestamp>1746214523000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am adding a new .json file for host model flags. Flag set 1 consists
of the current CAM default settings.
</comment><date>2025-05-02 14:35:23 -0500</date><id>9b42183b3b368cf7c079faf0a7b79eefc159f901</id><msg>I am adding a new .json file for host model flags. Flag set 1 consists</msg><path><editType>add</editType><file>run_scripts/run_bindiff_w_flags_config_host_flags.json</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfile</affectedPath><commitId>d1b42f244d4e38d86e5cf1bea3cbdb38950e094b</commitId><timestamp>1746220666000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am adding a Jenkinsfile for a new CLUBB generalized vertical
grid test that uses flag sets consisting of specialized flag
settings that are found in host models of which CLUBB is a part.
</comment><date>2025-05-02 16:17:46 -0500</date><id>d1b42f244d4e38d86e5cf1bea3cbdb38950e094b</id><msg>I am adding a Jenkinsfile for a new CLUBB generalized vertical</msg><path><editType>add</editType><file>jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_w_flags_config_host_flags.json</affectedPath><commitId>f1b430ab343e05a36e916cf1910c78c1a20c177b</commitId><timestamp>1746222050000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>I am adding a second set of host flags as part of the generalized
vertical grid test for host model flags. Flag set 2 consists of
flag settings that are found in the clubb_silhs_devel branch of CAM.
</comment><date>2025-05-02 16:40:50 -0500</date><id>f1b430ab343e05a36e916cf1910c78c1a20c177b</id><msg>I am adding a second set of host flags as part of the generalized</msg><path><editType>edit</editType><file>run_scripts/run_bindiff_w_flags_config_host_flags.json</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_w_flags_config_host_flags.json</affectedPath><commitId>6912ae1620711773f96385ece3b9330fc73daf68</commitId><timestamp>1746222283000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/bmg2</absoluteUrl><fullName>bmg2</fullName></author><authorEmail>bmg2@uwm.edu</authorEmail><comment>Fixing an error in the previous commit. (lol, good ol' find and replace)
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