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_class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/advance_xm_wpxp_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>e3a10e0ff494ca2a57b5895f5ab8cb40b45e7036</commitId><timestamp>1719948922000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Ri_zm calc (Part 2) - Move the brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd (#1156)

CLUBB ticket #1145

Includes previous steps:
* First step: Move call to calc_bv
* Ri_zm calc (Part 1.5) - Adjusted signature of diagnose_Lscale_from_tau #1145

Newest changes: Ri_zm calc (Part 2) - Move brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd

`brunt_vaisala_frq_sqd_smth` is now calculated in subroutine `calc_brunt_vaisala_freq_sqd` and it is now written to disk in `advance_clubb_core` with all the other `brunt_vaisala` variables.

Unfortunately, I had to make a couple more changes since moving this calculation into `calc_brunt_vaisala_freq_sqd` meant that any subroutine involved in calling `calc_stability_correction` would need to get `l_modify_limiters_for_cnvg_test` fed in, because `calc_brunt_vaisala_freq_sqd` is also called in `calc_stability_correction`.

This commit is BIT_CHANGING since `brunt_vaisala_frq_sqd_smth` used to be all zeros before this change in Lscale mode and now it is actually calculated. BFB in taus code.
</comment><date>2024-07-02 14:35:22 -0500</date><id>e3a10e0ff494ca2a57b5895f5ab8cb40b45e7036</id><msg>Ri_zm calc (Part 2) - Move the brunt_vaisala smoothing into calc_brunt_vaisala_freq_sqd (#1156)</msg><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/config/linux_x86_64_nvhpc.bash</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</affectedPath><affectedPath>compile/config/linux_x86_64_nvhpc_gpu_openmp.bash</affectedPath><affectedPath>compile/config/linux_x86_64_nvhpc_gpu_openacc.bash</affectedPath><commitId>40d301330e9263c649c014bcae7e371829f42ac8</commitId><timestamp>1719958353000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Testing the new module system with our GPU diffness test. See https://github.com/larson-group/sys_admin/issues/829
</comment><date>2024-07-02 17:12:33 -0500</date><id>40d301330e9263c649c014bcae7e371829f42ac8</id><msg>Testing the new module system with our GPU diffness test. See https://github.com/larson-group/sys_admin/issues/829</msg><path><editType>edit</editType><file>compile/config/linux_x86_64_nvhpc_gpu_openacc.bash</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_nvhpc.bash</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_nvhpc_gpu_openmp.bash</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</affectedPath><commitId>a166adc53620547cc0858fc77d0ab03095fcce70</commitId><timestamp>1719960091000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>The module system is setup via paths in /etc/profile.d/larson-group.sh, so we need to source it. https://github.com/larson-group/sys_admin/issues/829
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