Started by an SCM change12912407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master113b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes108b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host1809f1e1ad0e80be0a00148ceb1373cd3dd82e9469a9f1e1ad0e80be0a00148ceb1373cd3dd82e9469arefs/remotes/origin/master9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a9f1e1ad0e80be0a00148ceb1373cd3dd82e9469arefs/remotes/origin/master9f1e1ad0e80be0a00148ceb1373cd3dd82e9469a9f1e1ad0e80be0a00148ceb1373cd3dd82e9469arefs/remotes/origin/masterhttps://github.com/larson-group/clubb.git180ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterhttps://github.com/larson-group/sys_adminhttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_fire_tuning_gfortran_test/detail/clubb_fire_tuning_gfortran_test/180/artifactshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_fire_tuning_gfortran_test/detail/clubb_fire_tuning_gfortran_test/180/changeshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_fire_tuning_gfortran_test/detail/clubb_fire_tuning_gfortran_test/180/http://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_fire_tuning_gfortran_test/detail/clubb_fire_tuning_gfortran_test/180/testsfalseCompileRun fire_tunerfalse#18016196831912456clubb_fire_tuning_gfortran_test #180180false1809926SUCCESS1635323772259http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/180/src/CLUBB_core/diffusion.F909f1e1ad0e80be0a00148ceb1373cd3dd82e9469a1635271688000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables. 2021-10-26 13:08:08 -05009f1e1ad0e80be0a00148ceb1373cd3dd82e9469aUncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables.editsrc/CLUBB_core/diffusion.F90githttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephensfalseStarted by an SCM change12912407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master113b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes108b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host18179bc651171add5b6a340be02cf6f775ddc779aaa79bc651171add5b6a340be02cf6f775ddc779aaarefs/remotes/origin/master79bc651171add5b6a340be02cf6f775ddc779aaa79bc651171add5b6a340be02cf6f775ddc779aaarefs/remotes/origin/master79bc651171add5b6a340be02cf6f775ddc779aaa79bc651171add5b6a340be02cf6f775ddc779aaarefs/remotes/origin/masterhttps://github.com/larson-group/clubb.git181ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterhttps://github.com/larson-group/sys_adminfalse#18116192111912456clubb_fire_tuning_gfortran_test #181181false1819996SUCCESS1635410168944http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/181/src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/model_flags.F90src/G_unit_test_types/spurious_source_test.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90input/tunable_parameters_Lscale/configurable_model_flags.ininput/tunable_parameters_e3sm/configurable_model_flags.insrc/G_unit_test_types/pdf_parameter_tests.F90input/tunable_parameters/configurable_model_flags.insrc/clubb_tuner.F90987d63de489d2baa09ad6e1538b2c6dbb75516901635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920. Results are b4b when the flag is turned off, which it currently is. 2021-10-27 16:16:11 -0500987d63de489d2baa09ad6e1538b2c6dbb7551690Adding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920.editsrc/CLUBB_core/clubb_api_module.F90editinput/tunable_parameters/configurable_model_flags.ineditinput/tunable_parameters_e3sm/configurable_model_flags.ineditsrc/CLUBB_core/model_flags.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/clubb_driver.F90editinput/tunable_parameters_Lscale/configurable_model_flags.ineditsrc/clubb_tuner.F90editsrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/model_flags.F90src/G_unit_test_types/spurious_source_test.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90input/tunable_parameters_Lscale/configurable_model_flags.ininput/tunable_parameters_e3sm/configurable_model_flags.insrc/G_unit_test_types/pdf_parameter_tests.F90input/tunable_parameters_compatible_r8029/configurable_model_flags.ininput/tunable_parameters/configurable_model_flags.insrc/clubb_tuner.F9079bc651171add5b6a340be02cf6f775ddc779aaa1635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdates as requested to the l_use_tke_in_K_dfsn code: - The name of the flag is changed to l_use_tke_in_wp2_wp3_K_dfsn - Comments are added to the main pieces of code in advance_wp2_wp3 - The flag is added to the "compatible_r8029" configurable flags file. See this comment https://github.com/larson-group/clubb/issues/920#issuecomment-931446401 and following for more information. 2021-10-27 16:16:11 -050079bc651171add5b6a340be02cf6f775ddc779aaaUpdates as requested to the l_use_tke_in_K_dfsn code:editinput/tunable_parameters_compatible_r8029/configurable_model_flags.ineditsrc/clubb_tuner.F90editsrc/CLUBB_core/model_flags.F90editsrc/G_unit_test_types/spurious_source_test.F90editinput/tunable_parameters_Lscale/configurable_model_flags.ineditsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/clubb_driver.F90editinput/tunable_parameters/configurable_model_flags.ineditsrc/CLUBB_core/advance_clubb_core_module.F90editinput/tunable_parameters_e3sm/configurable_model_flags.ineditsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/clubb_api_module.F90githttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82false182http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/182/180http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/180/Started by an SCM change12912407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master113b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes108b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host17995d7773f81117daff784b8ab91f4211c2edc839095d7773f81117daff784b8ab91f4211c2edc8390refs/remotes/origin/master95d7773f81117daff784b8ab91f4211c2edc839095d7773f81117daff784b8ab91f4211c2edc8390refs/remotes/origin/master95d7773f81117daff784b8ab91f4211c2edc839095d7773f81117daff784b8ab91f4211c2edc8390refs/remotes/origin/masterhttps://github.com/larson-group/clubb.git179ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3ac51d30a0ee4fc9f8d2c3d295c3ce7e513a1efa3refs/remotes/origin/masterhttps://github.com/larson-group/sys_adminfalse#17913355661912456clubb_fire_tuning_gfortran_test #179179false1799856SUCCESS1634978171387http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/179/src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/model_flags.F90src/advance_microphys_module.F90src/CLUBB_core/diffusion.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_xp2_xpyp_module.F9095d7773f81117daff784b8ab91f4211c2edc83901634935501000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThese updates incorporate some of Shixuan Zhang's changes, including: (1) upwind scheme for the eddy diffusion code, which Shixuan says does not make a huge difference; and (2) l_smooth_heaviside_tau_wpxp flag in the mixing_length.F90 code, which is intended to give smoother results. Both of the flags for these changes are turned off, but these updates are BIT_CHANGING because of some minor changes to the way that factors of rho_ds_* and invrs_rho_ds_* are handled going into the diffusion.F90 subroutines. Most cases look identical in pyplotgen, but sensitive cases like arm_97 and rico look slightly different. These changes were originally in pull request #962, but because of conflicts with the master branch code base that developed, they could not be rebased and merged, so I incorporated them into this new commit. 2021-10-22 15:45:01 -050095d7773f81117daff784b8ab91f4211c2edc8390These updates incorporate some of Shixuan Zhang's changes, including:editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/diffusion.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/advance_microphys_module.F90editsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/model_flags.F90githttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensfalse180http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/180/178http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/178/