Started by an SCM change12912407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master113b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes108b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host1586074d7b38f6bd68b4344ab19c9e3ddf8de415e956074d7b38f6bd68b4344ab19c9e3ddf8de415e95refs/remotes/origin/master6074d7b38f6bd68b4344ab19c9e3ddf8de415e956074d7b38f6bd68b4344ab19c9e3ddf8de415e95refs/remotes/origin/master6074d7b38f6bd68b4344ab19c9e3ddf8de415e956074d7b38f6bd68b4344ab19c9e3ddf8de415e95refs/remotes/origin/masterhttps://github.com/larson-group/clubb.git1589c672f54d3fb0c316475258609ebd1c70b2d3bca9c672f54d3fb0c316475258609ebd1c70b2d3bcarefs/remotes/origin/master9c672f54d3fb0c316475258609ebd1c70b2d3bca9c672f54d3fb0c316475258609ebd1c70b2d3bcarefs/remotes/origin/master9c672f54d3fb0c316475258609ebd1c70b2d3bca9c672f54d3fb0c316475258609ebd1c70b2d3bcarefs/remotes/origin/masterhttps://github.com/larson-group/sys_adminhttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_fire_tuning_gfortran_test/detail/clubb_fire_tuning_gfortran_test/158/artifactshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_fire_tuning_gfortran_test/detail/clubb_fire_tuning_gfortran_test/158/changeshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_fire_tuning_gfortran_test/detail/clubb_fire_tuning_gfortran_test/158/http://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_fire_tuning_gfortran_test/detail/clubb_fire_tuning_gfortran_test/158/testsfalseCompileRun fire_tunerfalse#1585033621912456clubb_fire_tuning_gfortran_test #158158false1588600SUCCESS1630139767693http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/158/- utilities/sens_matrix/test_analyzeSensMatrix.pyutilities/sens_matrix/analyze_sensitivity_matrix.pyutilities/sens_matrix/sens_matrix_dashboard.py6074d7b38f6bd68b4344ab19c9e3ddf8de415e951630082416000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduChange normalization of sensitivity matrix.
Before it was normalized by (default-observed) values of metrics.
Now it is normalized by 1/obs. This leaves the sensitivity matrix
free from dependence on the bias and puts the bias entirely
on the right-hand side of the matrix equation.
Also, the parameter values are no longer normalized by max(def,sens)
values. Instead, they are normalized by the values used
in the default simulation, and a sensitivity simulation value
is used only if the default-simulation value is zero.
Add plots of left-singular vectors and right-singular vectors.
Annotate these plots with singular values.
One of the unit tests, test_3x2_C8transformed, is broken.
For #910.
2021-08-27 11:40:16 -05006074d7b38f6bd68b4344ab19c9e3ddf8de415e95Change normalization of sensitivity matrix.editutilities/sens_matrix/test_analyzeSensMatrix.pyeditutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/sens_matrix_dashboard.py
githttp://carson.math.uwm.edu/jenkins/user/vlarsonVince LarsonvlarsonfalseStarted by an SCM change12912407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master113b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes108b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host159728531ab73a7f769b1daea31a00fdb2afe821dd9728531ab73a7f769b1daea31a00fdb2afe821dd9refs/remotes/origin/master728531ab73a7f769b1daea31a00fdb2afe821dd9728531ab73a7f769b1daea31a00fdb2afe821dd9refs/remotes/origin/master728531ab73a7f769b1daea31a00fdb2afe821dd9728531ab73a7f769b1daea31a00fdb2afe821dd9refs/remotes/origin/masterhttps://github.com/larson-group/clubb.git1594df474c504473c6d2306fad30ab9129faa68f5dd4df474c504473c6d2306fad30ab9129faa68f5ddrefs/remotes/origin/master4df474c504473c6d2306fad30ab9129faa68f5dd4df474c504473c6d2306fad30ab9129faa68f5ddrefs/remotes/origin/master4df474c504473c6d2306fad30ab9129faa68f5dd4df474c504473c6d2306fad30ab9129faa68f5ddrefs/remotes/origin/masterhttps://github.com/larson-group/sys_adminfalse#15914183911912456clubb_fire_tuning_gfortran_test #159159false1598659SUCCESS1630398968466http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/159/- src/CLUBB_core/advance_clubb_core_module.F90src/G_unit_test_types/spurious_source_test.F90src/CLUBB_core/model_flags.F90src/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90input/tunable_parameters_Lscale/configurable_model_flags.ininput/tunable_parameters_e3sm/configurable_model_flags.insrc/G_unit_test_types/pdf_parameter_tests.F90input/tunable_parameters/configurable_model_flags.insrc/CLUBB_core/sfc_varnce_module.F90src/clubb_tuner.F90728531ab73a7f769b1daea31a00fdb2afe821dd91630332047000http://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeegan72510114+RhodesKeegan@users.noreply.github.comAdding in l_vary_convect_depth as requested.
For ticket #905.
Results are confirmed to be BFB identical.
2021-08-30 09:00:47 -0500728531ab73a7f769b1daea31a00fdb2afe821dd9Adding in l_vary_convect_depth as requested.editinput/tunable_parameters_Lscale/configurable_model_flags.ineditsrc/CLUBB_core/sfc_varnce_module.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/G_unit_test_types/spurious_source_test.F90editinput/tunable_parameters/configurable_model_flags.ineditsrc/CLUBB_core/model_flags.F90editinput/tunable_parameters_e3sm/configurable_model_flags.ineditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/clubb_driver.F90editsrc/clubb_tuner.F90editsrc/CLUBB_core/clubb_api_module.F90
git- iptable_scripts/iptables_patrol.bashd7f62d936baee6a366bdfae3c56da66b05a88f121630350879000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comChanging iptables script to look at the correct files for the new computer configuration.
2021-08-30 14:14:39 -0500d7f62d936baee6a366bdfae3c56da66b05a88f12Changing iptables script to look at the correct files for the new computer configuration.editiptable_scripts/iptables_patrol.bash
- iptable_scripts/iptables_patrol.bash6f56ada72a78e19d045583b098ee2160160e1c241630350879000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comUpdating iptables_patrol.bash script for Pop_OS! log file locations.
2021-08-30 14:14:39 -05006f56ada72a78e19d045583b098ee2160160e1c24Updating iptables_patrol.bash script for Pop_OS! log file locations.editiptable_scripts/iptables_patrol.bash
- apache_config/conf.modules.d/01-cgi.confapache_config/conf.modules.d/10-wsgi.confapache_config/old_carson_configuration/conf.d/welcome.confapache_config/old_carson_configuration/conf.modules.d/00-base.confapache_config/old_carson_configuration/conf.d/autoindex.confapache_config/old_carson_configuration/conf.d/READMEapache_config/README.mdapache_config/conf.d/READMEapache_config/old_carson_configuration/conf/httpd.confapache_config/conf/httpd.confapache_config/conf.modules.d/00-dav.confapache_config/old_carson_configuration/conf.d/fcgid.confapache_config/conf.modules.d/00-ssl.confapache_config/conf.modules.d/10-subversion.confapache_config/old_carson_configuration/conf.modules.d/00-dav.confapache_config/conf.modules.d/00-base.confapache_config/conf.d/ssl.conf.bakapache_config/old_carson_configuration/conf.modules.d/00-mpm.confapache_config/conf.d/fcgid.confapache_config/old_carson_configuration/conf.d/ssl.conf.bakapache_config/conf.d/php.confapache_config/old_carson_configuration/conf.d/manual.confapache_config/conf.modules.d/00-proxy.confapache_config/conf/httpd-le-ssl.confapache_config/old_carson_configuration/conf.modules.d/00-proxy.confapache_config/conf.d/manual.confapache_config/old_carson_configuration/conf/magicapache_config/old_carson_configuration/conf.d/php.confapache_config/old_carson_configuration/conf.d/trac.confapache_config/old_carson_configuration/conf/httpd-le-ssl.confapache_config/conf.d/twiki.confapache_config/conf.d/trac.confapache_config/old_carson_configuration/conf.d/twiki.confapache_config/conf.modules.d/00-lua.confapache_config/conf/magicapache_config/old_carson_configuration/conf.modules.d/01-cgi.confapache_config/conf.modules.d/00-systemd.confapache_config/authzapache_config/conf.d/autoindex.confapache_config/old_carson_configuration/authzapache_config/conf.modules.d/00-dbd.confapache_config/conf.modules.d/10-php.confapache_config/conf.modules.d/10-fcgid.confapache_config/old_carson_configuration/conf.modules.d/10-subversion.confapache_config/conf.d/perl.confapache_config/old_carson_configuration/conf.modules.d/10-php.confapache_config/old_carson_configuration/README.mdapache_config/old_carson_configuration/conf.modules.d/10-fcgid.confapache_config/old_carson_configuration/conf.modules.d/10-wsgi.confapache_config/old_carson_configuration/conf.modules.d/00-lua.confapache_config/old_carson_configuration/conf.d/perl.confapache_config/conf.modules.d/00-mpm.confapache_config/conf.d/userdir.confapache_config/old_carson_configuration/conf.modules.d/02-perl.confapache_config/conf.modules.d/02-perl.confapache_config/old_carson_configuration/conf.modules.d/00-systemd.confapache_config/conf.d/welcome.confapache_config/old_carson_configuration/conf.modules.d/00-dbd.confapache_config/old_carson_configuration/conf.modules.d/00-ssl.confapache_config/old_carson_configuration/conf.d/userdir.confe53215b193c0e8c663d2e6d9c93b12e11aa497061630350879000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comMoving old_carson's apache comfiguration files to subfolder incase we need to access them again.
2021-08-30 14:14:39 -0500e53215b193c0e8c663d2e6d9c93b12e11aa49706Moving old_carson's apache comfiguration files to subfolder incase we need to access them again.deleteapache_config/conf.d/welcome.confdeleteapache_config/conf.modules.d/00-lua.confaddapache_config/old_carson_configuration/conf.d/userdir.confdeleteapache_config/conf.d/perl.confdeleteapache_config/conf.modules.d/00-dbd.confaddapache_config/old_carson_configuration/conf.d/php.confaddapache_config/old_carson_configuration/conf/httpd.confaddapache_config/old_carson_configuration/conf.modules.d/00-systemd.confdeleteapache_config/conf.d/trac.confdeleteapache_config/conf.d/autoindex.confdeleteapache_config/conf.d/twiki.confaddapache_config/old_carson_configuration/conf.modules.d/02-perl.confaddapache_config/old_carson_configuration/conf.modules.d/00-dbd.confdeleteapache_config/conf/httpd.confdeleteapache_config/conf/magicaddapache_config/old_carson_configuration/conf.d/ssl.conf.bakdeleteapache_config/conf.d/fcgid.confdeleteapache_config/conf.d/php.confaddapache_config/old_carson_configuration/conf.modules.d/00-ssl.confdeleteapache_config/conf.modules.d/01-cgi.confdeleteapache_config/conf.modules.d/10-wsgi.confaddapache_config/old_carson_configuration/conf.modules.d/00-proxy.confaddapache_config/old_carson_configuration/conf/magicdeleteapache_config/conf.d/userdir.confdeleteapache_config/conf.modules.d/00-systemd.confaddapache_config/old_carson_configuration/conf.modules.d/10-php.confdeleteapache_config/conf.modules.d/00-base.confaddapache_config/old_carson_configuration/conf.d/welcome.confaddapache_config/old_carson_configuration/conf.modules.d/00-lua.confaddapache_config/old_carson_configuration/conf.modules.d/10-fcgid.confaddapache_config/old_carson_configuration/authzaddapache_config/old_carson_configuration/conf.d/READMEdeleteapache_config/conf.modules.d/10-fcgid.confdeleteapache_config/conf.modules.d/10-php.confaddapache_config/old_carson_configuration/conf.modules.d/00-mpm.confdeleteapache_config/conf.modules.d/10-subversion.confaddapache_config/old_carson_configuration/conf.d/twiki.confaddapache_config/old_carson_configuration/conf.d/trac.confaddapache_config/old_carson_configuration/conf/httpd-le-ssl.confaddapache_config/old_carson_configuration/conf.modules.d/00-dav.confaddapache_config/old_carson_configuration/conf.modules.d/00-base.confdeleteapache_config/conf.modules.d/02-perl.confdeleteapache_config/conf.modules.d/00-mpm.confaddapache_config/old_carson_configuration/conf.d/manual.confaddapache_config/old_carson_configuration/conf.modules.d/01-cgi.confdeleteapache_config/README.mddeleteapache_config/conf.modules.d/00-proxy.confaddapache_config/old_carson_configuration/conf.modules.d/10-subversion.confaddapache_config/old_carson_configuration/conf.d/fcgid.confaddapache_config/old_carson_configuration/conf.d/autoindex.confdeleteapache_config/conf.d/ssl.conf.bakaddapache_config/old_carson_configuration/README.mddeleteapache_config/conf.d/READMEdeleteapache_config/conf.modules.d/00-ssl.confaddapache_config/old_carson_configuration/conf.modules.d/10-wsgi.confaddapache_config/old_carson_configuration/conf.d/perl.confdeleteapache_config/conf.d/manual.confdeleteapache_config/conf.modules.d/00-dav.confdeleteapache_config/conf/httpd-le-ssl.confdeleteapache_config/authz
- backup_scripts/apache_backup.bash4287d44b50a4947261e25722338fc603f9a97df31630350879000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comModifying apache_backup.bash to point to the new carson apache2 configuration files for backup.
2021-08-30 14:14:39 -05004287d44b50a4947261e25722338fc603f9a97df3Modifying apache_backup.bash to point to the new carson apache2 configuration files for backup.editbackup_scripts/apache_backup.bash
- iptable_scripts/rc.netfilter6cda4e633fb12fe8bc3afea1fbddd472e75fe4d51630352785000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comUpdating rc.netfilter to work with new carson.
2021-08-30 14:46:25 -05006cda4e633fb12fe8bc3afea1fbddd472e75fe4d5Updating rc.netfilter to work with new carson.editiptable_scripts/rc.netfilter
- deploy_script/sys_admin_config.jsond46d024b36678efe291c0cd6d56274369905cce41630353377000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comChanging deploy script sys_admin configuration to have the correct iptables save sommand for new carson.
2021-08-30 14:56:17 -0500d46d024b36678efe291c0cd6d56274369905cce4Changing deploy script sys_admin configuration to have the correct iptables save sommand for new carson.editdeploy_script/sys_admin_config.json
- deploy_script/sys_admin_config.json532046fc1ee14447b30de6e6be5b9ebe5756a1271630353476000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comAdding comma at end of config json to allow it to work.
2021-08-30 14:57:56 -0500532046fc1ee14447b30de6e6be5b9ebe5756a127Adding comma at end of config json to allow it to work.editdeploy_script/sys_admin_config.json
- deploy_script/sys_admin_config.json4df474c504473c6d2306fad30ab9129faa68f5dd1630354282000http://carson.math.uwm.edu/jenkins/user/pbroelspbroelsroelspbr@gmail.comFinal change to the deploy script sys_admin config fixing the post steps for all computers to allow full through run.
2021-08-30 15:11:22 -05004df474c504473c6d2306fad30ab9129faa68f5ddFinal change to the deploy script sys_admin config fixing the post steps for all computers to allow full through run.editdeploy_script/sys_admin_config.json
githttp://carson.math.uwm.edu/jenkins/user/72510114+rhodeskeegan72510114+RhodesKeeganhttp://carson.math.uwm.edu/jenkins/user/pbroelspbroelsfalse160http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/160/158http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/158/Started by an SCM change12912407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master113b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes108b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host157e8cfbf132e77e340988e90938742ec1912a371d1e8cfbf132e77e340988e90938742ec1912a371d1refs/remotes/origin/mastere8cfbf132e77e340988e90938742ec1912a371d1e8cfbf132e77e340988e90938742ec1912a371d1refs/remotes/origin/mastere8cfbf132e77e340988e90938742ec1912a371d1e8cfbf132e77e340988e90938742ec1912a371d1refs/remotes/origin/masterhttps://github.com/larson-group/clubb.git1579c672f54d3fb0c316475258609ebd1c70b2d3bca9c672f54d3fb0c316475258609ebd1c70b2d3bcarefs/remotes/origin/master9c672f54d3fb0c316475258609ebd1c70b2d3bca9c672f54d3fb0c316475258609ebd1c70b2d3bcarefs/remotes/origin/master9c672f54d3fb0c316475258609ebd1c70b2d3bca9c672f54d3fb0c316475258609ebd1c70b2d3bcarefs/remotes/origin/masterhttps://github.com/larson-group/sys_adminfalse#15715783921912456clubb_fire_tuning_gfortran_test #157157false1578551SUCCESS1629966969369http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/157/- src/CLUBB_core/clip_explicit.F901656d87e61d919b78bfa54fc2d30171d4a9b16011629917460000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdating the surface clipping coefficient...
...to avoid MC3E failure with PGI compiler. I find all cases run successfully with this coefficient, with ifort, gfortran, and PGI.
2021-08-25 13:51:00 -05001656d87e61d919b78bfa54fc2d30171d4a9b1601Updating the surface clipping coefficient...editsrc/CLUBB_core/clip_explicit.F90
- READMEe8cfbf132e77e340988e90938742ec1912a371d11629917565000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdding blank line to note that my previous commit was BIT_CHANGING.
Also see #921 and #893 regarding the previous commit about the surface clipping coefficient.
2021-08-25 13:52:45 -0500e8cfbf132e77e340988e90938742ec1912a371d1Adding blank line to note that my previous commit was BIT_CHANGING.editREADME
git- bitten_test_driver_scripts/check_budget_balance.bash9c672f54d3fb0c316475258609ebd1c70b2d3bca1629914156000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comAdding a sed command to the budget_balance bash script that will always set the l_lmm_stepping flag to false, since that flag does not currently give balanced budgets.
See https://github.com/larson-group/clubb/issues/893#issuecomment-905712817.
2021-08-25 12:55:56 -05009c672f54d3fb0c316475258609ebd1c70b2d3bcaAdding a sed command to the budget_balance bash script that will always set the l_lmm_stepping flag to false, since that flag does not currently give balanced budgets.editbitten_test_driver_scripts/check_budget_balance.bash
githttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse158http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/158/156http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/156/