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Violations were introduced as a result of changes made by ticket #733,
this commit resolves the coding standard violations.
Results BFB identical.
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This is not set up to change results currently, since the coefficient of the new term is zero, but it is BIT_CHANGING since it will include new output in the netcdf files.

Also includes updates to pyplotgen to accommodate the new term.
</comment><date>2021-07-29 12:28:21 -0500</date><id>9e4a950550aac99cbf8fe1dfe2820a4d1f45b277</id><msg>Adding wp3_pr_tp (aka "negative nose" term) to wp3 equation.  Related to #920.</msg><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_do.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_fire.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls3_night.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_all.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/parameter_indices.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_zt_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_variables.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_nd.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_wangara.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf01.in</file></path><path><editType>edit</editType><file>input/tunable_parameters_compatible_r8029/tunable_parameters.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_rico.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_ds.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_ticket_756.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/parameters_tunable.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls2.in</file></path><path><editType>edit</editType><file>input/stats/standard_stats.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_lba.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_nov11_altocu.in</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgets.py</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm_97.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_bomex.in</file></path><path><editType>edit</editType><file>input/tunable_parameters/tunable_parameters.in</file></path><path><editType>edit</editType><file>input/tunable_parameters_Lscale/tunable_parameters.in</file></path><path><editType>edit</editType><file>input/tunable_parameters_e3sm/tunable_parameters.in</file></path><path><editType>edit</editType><file>input/stats/all_stats.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_atex.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/stats_zt_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_wp2_wp3_module.F90</affectedPath><affectedPath>src/CLUBB_core/parameters_tunable.F90</affectedPath><commitId>fa20b10387fb5dc6a45800fa7eb63b972bc4070f</commitId><timestamp>1627579701000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Changing the way the new wp3_pr_tp term works, by generalizing the wp3_terp_pr_lhs subroutine.  Also cleaning up comments and changing the description of the wp3_pr_tp variable in the netcdf output files, hence this commit is BIT_CHANGING, although it will not affect numerical results since the wp3_pr_tp coefficient (C_wp3_pr_tp) is set to zero.

Related to #920.
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Related to #920.
</comment><date>2021-07-29 13:49:05 -0500</date><id>be8c34c191362f97866647c2fc8674a71456d314</id><msg>Adding the new pressure-related terms, wp2_pr_dfsn and wp3_pr_tp, to the --sam-style-budgets option in Pyplotgen.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.py</file></path></item><kind>git</kind></changeSet><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>python_nightly_test_suite/tests/bit_diff_test.py</affectedPath><commitId>ab733d0b1c0d871f52c77dea9df8dc1176d9f56a</commitId><timestamp>1627592916000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Improving copy logic. larson-group/e3sm#38
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_class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#138</displayName><duration>1547742</duration><estimatedDuration>1912456</estimatedDuration><fullDisplayName>clubb_fire_tuning_gfortran_test #138</fullDisplayName><id>138</id><keepLog>false</keepLog><number>138</number><queueId>7461</queueId><result>SUCCESS</result><timestamp>1627720568365</timestamp><url>http://carson.math.uwm.edu/jenkins/job/clubb_fire_tuning_gfortran_test/138/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/setup_clubb_pdf_params.F90</affectedPath><commitId>d42ffb89782f2cf38bb52c5236beb5fd39599598</commitId><timestamp>1627654958000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/rhodesk</absoluteUrl><fullName>rhodesk</fullName></author><authorEmail>rhodesk@msoe.edu</authorEmail><comment>Removing l_interp_prescribed_params from setup_clubb_pdf_params.
The flag has been removed and so has any code underneat a logic statement
involving this statement unless it has multiple flags. The else statement
in the if block involving this flag has been set to execute without an
if block.
For ticket #916
Results are BFB identical. Additionally, complex logic statements
with the use of more flags had those flags adjusted and BFB results
were also confirmed with these changes.
</comment><date>2021-07-30 09:22:38 -0500</date><id>d42ffb89782f2cf38bb52c5236beb5fd39599598</id><msg>Removing l_interp_prescribed_params from setup_clubb_pdf_params.</msg><path><editType>edit</editType><file>src/CLUBB_core/setup_clubb_pdf_params.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_timestep_tests.bash</affectedPath><commitId>70e26ca1acd06149d3b7b996235769e5e0509c39</commitId><timestamp>1627656249000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/pbroels</absoluteUrl><fullName>pbroels</fullName></author><authorEmail>pbroels@uwm.edu</authorEmail><comment>Modifying run_timestep_tests.bash to run only 10 minute and above timesteps and exit immediately if the 10 mintue timestep fails. larson-group/sys_admin#749
</comment><date>2021-07-30 09:44:09 -0500</date><id>70e26ca1acd06149d3b7b996235769e5e0509c39</id><msg>Modifying run_timestep_tests.bash to run only 10 minute and above timesteps and exit immediately if the 10 mintue timestep fails. larson-group/sys_admin#749</msg><path><editType>edit</editType><file>run_scripts/run_timestep_tests.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfile</affectedPath><commitId>c07e805a7cea2e8ef0d7e1bc7506dde99b08e029</commitId><timestamp>1627656249000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/pbroels</absoluteUrl><fullName>pbroels</fullName></author><authorEmail>pbroels@uwm.edu</authorEmail><comment>Adding new timestep test to clubb jenkins tests. larson-group/sys_admin#749
</comment><date>2021-07-30 09:44:09 -0500</date><id>c07e805a7cea2e8ef0d7e1bc7506dde99b08e029</id><msg>Adding new timestep test to clubb jenkins tests. larson-group/sys_admin#749</msg><path><editType>add</editType><file>jenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_scm_all.bash</affectedPath><commitId>c00a83f64b5a5b675858f71463a3cc48547e9dc1</commitId><timestamp>1627659244000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Fixing false printing of "All cases ran to completion."
</comment><date>2021-07-30 10:34:04 -0500</date><id>c00a83f64b5a5b675858f71463a3cc48547e9dc1</id><msg>Fixing false printing of "All cases ran to completion."</msg><path><editType>edit</editType><file>run_scripts/run_scm_all.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>input_misc/tuner/error_arm.in</affectedPath><affectedPath>input_misc/tuner/error_atex.in</affectedPath><affectedPath>input_misc/tuner/error_rico.in</affectedPath><affectedPath>input_misc/tuner/error_gabls3_night.in</affectedPath><affectedPath>input_misc/tuner/error_bomex.in</affectedPath><affectedPath>input_misc/tuner/error_nov11_altocu.in</affectedPath><affectedPath>src/clubb_tuner.F90</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_ds.in</affectedPath><affectedPath>input_misc/tuner/error_all.in</affectedPath><affectedPath>input_misc/tuner/error_wangara.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_do.in</affectedPath><affectedPath>input_misc/tuner/error_gabls2.in</affectedPath><affectedPath>input_misc/tuner/error_dycoms2_rf02_nd.in</affectedPath><affectedPath>input_misc/tuner/error_ticket_756.in</affectedPath><commitId>cdc1c0ff327d2514e6a192f680f0557eb9d5775b</commitId><timestamp>1627663201000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Updating clubb_tuner.F90 to resolve an issue where the optimized tunable_parameter_*.in file was not being created by default.  Now it will always be created when the tuner is run, as it should be.

Also updating a number of input_misc/tuner/error_*.in tuner setup files to ensure that C1 is not tuned by default.  If C1 is tuned but C14 is fixed, this causes CLUBB to crash since it requires C1=C14.

See #939.
</comment><date>2021-07-30 11:40:01 -0500</date><id>cdc1c0ff327d2514e6a192f680f0557eb9d5775b</id><msg>Updating clubb_tuner.F90 to resolve an issue where the optimized tunable_parameter_*.in file was not being created by default.  Now it will always be created when the tuner is run, as it should be.</msg><path><editType>edit</editType><file>input_misc/tuner/error_gabls2.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_arm.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_bomex.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_ticket_756.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_gabls3_night.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_wangara.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_all.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_rico.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_nov11_altocu.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_do.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_nd.in</file></path><path><editType>edit</editType><file>input_misc/tuner/error_dycoms2_rf02_ds.in</file></path><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/error_atex.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/clubb_tuner.F90</affectedPath><commitId>a6feee394218a885e95e99d8d03ac92a930275cd</commitId><timestamp>1627663201000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Updating wording
</comment><date>2021-07-30 11:40:01 -0500</date><id>a6feee394218a885e95e99d8d03ac92a930275cd</id><msg>Updating wording</msg><path><editType>edit</editType><file>src/clubb_tuner.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>compile/config/linux_x86_64_pgroup_debug_NCAR.bash</affectedPath><affectedPath>compile/config/linux_x86_64_pgroup.bash</affectedPath><commitId>c75c501143b4c6f91baef247e9eac49d4bd66375</commitId><timestamp>1627666319000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/rhodesk</absoluteUrl><fullName>rhodesk</fullName></author><authorEmail>rhodesk@msoe.edu</authorEmail><comment>Adding in the Mstandard flag to the pgi compiler settings.
For ticket #928.
Results are BFB identical.
</comment><date>2021-07-30 12:31:59 -0500</date><id>c75c501143b4c6f91baef247e9eac49d4bd66375</id><msg>Adding in the Mstandard flag to the pgi compiler settings.</msg><path><editType>edit</editType><file>compile/config/linux_x86_64_pgroup.bash</file></path><path><editType>edit</editType><file>compile/config/linux_x86_64_pgroup_debug_NCAR.bash</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/README.md</affectedPath><affectedPath>postprocessing/pyplotgen/pyplotgen.py</affectedPath><commitId>b19fddfe97ffca638b32ad37441e6ce75153c2bc</commitId><timestamp>1627666702000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Updating pyplotgen.py and README to clarify file name mismatch error and how to resolve it.

See #895.
</comment><date>2021-07-30 12:38:22 -0500</date><id>b19fddfe97ffca638b32ad37441e6ce75153c2bc</id><msg>Updating pyplotgen.py and README to clarify file name mismatch error and how to resolve it.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/README.md</file></path><path><editType>edit</editType><file>postprocessing/pyplotgen/pyplotgen.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/README.md</affectedPath><commitId>9a6b7d72b96d350526e54ec0af848c3858c054cc</commitId><timestamp>1627666702000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Fixing typo.
</comment><date>2021-07-30 12:38:22 -0500</date><id>9a6b7d72b96d350526e54ec0af848c3858c054cc</id><msg>Fixing typo.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/README.md</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/README.md</affectedPath><commitId>6d8db4b7452280cc1a2a0d29c7458c44f0826b17</commitId><timestamp>1627666702000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Clarifying README.
</comment><date>2021-07-30 12:38:22 -0500</date><id>6d8db4b7452280cc1a2a0d29c7458c44f0826b17</id><msg>Clarifying README.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/README.md</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>postprocessing/pyplotgen/pyplotgen.py</affectedPath><commitId>f5e75e3ca1940ef435c2ecd45683d3760ec8a36d</commitId><timestamp>1627666702000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/59519056+bstephens82</absoluteUrl><fullName>59519056+bstephens82</fullName></author><authorEmail>59519056+bstephens82@users.noreply.github.com</authorEmail><comment>Placing line breaks in the new error message and minor wording updates.

See #895.
</comment><date>2021-07-30 12:38:22 -0500</date><id>f5e75e3ca1940ef435c2ecd45683d3760ec8a36d</id><msg>Placing line breaks in the new error message and minor wording updates.</msg><path><editType>edit</editType><file>postprocessing/pyplotgen/pyplotgen.py</file></path></item><kind>git</kind></changeSet><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>nightly_tests/nightly_config.sh</affectedPath><affectedPath>nightly_tests/nightly_tests.bash</affectedPath><commitId>6ad4cb64aacd42c4dc56763c1be2e4f9e5b058ea</commitId><timestamp>1627662345000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/pbroels</absoluteUrl><fullName>pbroels</fullName></author><authorEmail>pbroels@uwm.edu</authorEmail><comment>Fixing errors in nightly_tests.bash that prevented the tests from running. I also disabled the misc tests as they have been fully ported to jenkins. larson-group/sys_admin#749
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