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jax fortran oracle tests (#1404)
Restored clubb_jax vs clubb_f2py fortran bindings tests that compare the outputs of clubb_jax functions directly to their compiled fortran counterparts.
clubb_jax changes are minimal:
Use hardcoded pi that matches the pi used in fortran instead of jnp.pi
remove the clubb_release hardcoded path from the gases_ckd_data.py parser.
2026-10-20 14:57:07 -0500bb08268b3348ef71f7eec35eb0fb5ee4eb10197dRestore jax fortran oracle tests (#1404)addclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_pdf_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_binormal_moments_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diagnose_upxp_vs_fortran.pyeditclubb_python_api/clubb_python/CLUBB_core/skx_module.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_compute_sigma_sqd_w_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_luhar_3d_driver_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_compute_gamma_skw_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_remapping_module_vs_fortran.pyeditjenkins_tests/clubb_jax/Jenkinsfileaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_sponge_damp_xp23_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_setter_var_params_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_xpyp_term_ta_godunov_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_smooth_heaviside_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pvertinterp_vs_fortran.pyeditclubb_python_api/clubb_python/CLUBB_core/interpolation.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cholesky_corr_mtx_approx_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_solver_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diagnose_xp3_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_ly93_pdf_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_sunray_sw_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_coefs_semiimpl_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mirror_lower_triangular_vs_fortran.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_jax/src/Radiation/BUGSrad/gases_ckd_data.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_Nc_Ncn_eqns_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_adg2_driver_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_limits_f_x_responder_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_hybrid_pdf_main_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pdf_moment_integrals_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_rcm_sat_adj_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diagnose_correlations_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calc_roots_vs_fortran.pyeditclubb_jax/src/CLUBB_core/advance_helper_module.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_clip_covar_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mean_adv_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_spurious_source_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diffusion_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mono_flux_limiter_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_saturation_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calendar_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_w_up_in_cloud_vs_fortran.pyaddclubb_python_api/f2py_fortran_wrappers/cloud_sed_module_wrapper.F90addclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cholesky_factor_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_clip_variance_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calc_comp_corrs_binormal_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pos_definite_vs_fortran.pyedittests/run_pytests.shaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cloud_drop_sed_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_remapping_ppm_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_luhar_params_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_pdf_main_vs_fortran.pyedit.agents/skills/clubb-pytests/SKILL.mdaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_xp3_vs_fortran.pyaddclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_param_nam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- clubb_jax/src/CLUBB_core/fill_holes.py.agents/skills/clubb-documentation/language/SKILL.mdclubb_jax/pytests/auto_llm_generated_pytests/test_multicolumn_microphys_adapters.pyclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.py.agents/skills/clubb-documentation/change-messages/SKILL.md82c8fdb39580f015d26f9cb021b8376696d96b7f1792549343000https://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFix per-column inputs in JAX microphysics (#1407)
* Align JAX microphysics with per-column Fortran inputs
Pass each column’s parameters into PDF preparation and its own grid spacing into hydrometeor hole filling after the master multi-column fix. The previous scalar remapping disagreed with current Fortran from step 2.
Six focused eager/JIT checks pass, covering column independence, conserved mass and derivatives. Both regressions detect the retained pre-fix adapters; full case comparisons are in progress.
(cherry picked from commit 7fc8280d9ce3fe0ec51bf5e7f3cfd3a0e7c8838a)
* Explain PR problems before describing their solutions
Change-first PR openings make their motivation harder to follow. Use
Motivation and Change to describe the problem first, then its cause and
the proposed solution; align the language guidance with that order.
Both documentation skills validate, and relative-link checks pass.
2026-10-20 21:22:23 -050082c8fdb39580f015d26f9cb021b8376696d96b7fFix per-column inputs in JAX microphysics (#1407)edit.agents/skills/clubb-documentation/language/SKILL.mdeditclubb_jax/src/CLUBB_core/fill_holes.pyeditclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_multicolumn_microphys_adapters.pyedit.agents/skills/clubb-documentation/change-messages/SKILL.md
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