Started by an SCM change Obtained jenkins_tests/clubb_dash/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/clubb_dash [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_dash # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 6e48f97c2a96bc78fb498c82f1ed0bb690235349 (refs/remotes/origin/master) Commit message: "Restrict BIT_CHANGING guidance to Fortran result changes (#1399)" > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6e48f97c2a96bc78fb498c82f1ed0bb690235349 # timeout=10 > git rev-list --no-walk c47faf30cea562966e64eedc259a5074c6cf89b1 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run Dash pytests) [Pipeline] withEnv [Pipeline] { [Pipeline] sh + export PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin + PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin + node --version v22.23.3 + bash tests/run_pytests.sh -dash --junitxml=/home/jenkins/workspace/clubb_dash/output/tests/pytests/dash.xml --durations=10 Installing uv 0.11.32 in /home/jenkins/workspace/clubb_dash/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_dash/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_dash/.venv-python Using CPython 3.12.3 interpreter at: /usr/bin/python3.12 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing dash requirements into /home/jenkins/workspace/clubb_dash/.venv-python Using Python 3.12.3 environment at: .venv-python Resolved 71 packages in 917ms Downloading pygments (1.2MiB) Downloading cryptography (4.5MiB) Downloading fonttools (5.2MiB) Downloading matplotlib (8.4MiB) Downloading netcdf4 (10.1MiB) Downloading numpy (16.0MiB) Downloading pillow (6.6MiB) Downloading scipy (33.7MiB) Downloading plotly (9.5MiB) Downloading pydantic-core (2.1MiB) Downloading meson (1.1MiB) Downloading cftime (1.6MiB) Downloading kiwisolver (1.4MiB) Downloading dash (7.6MiB) Downloaded kiwisolver Downloaded cftime Downloaded pydantic-core Downloaded meson Downloaded pygments Downloaded cryptography Downloaded fonttools Downloaded pillow Downloaded dash Downloaded matplotlib Downloaded netcdf4 Downloaded numpy Downloaded plotly Downloaded scipy Prepared 71 packages in 1.77s Installed 71 packages in 47ms + annotated-types==0.8.0 + anyio==4.15.1 + attrs==26.1.0 + blinker==1.9.0 + certifi==2026.7.22 + cffi==2.1.1 + cftime==1.6.6.1 + charset-normalizer==3.5.2 + click==8.5.0 + contourpy==1.4.0 + cryptography==50.0.2 + cycler==0.12.1 + dash==3.4.0 + dill==0.4.1 + diskcache==5.6.3 + flask==3.1.3 + fonttools==4.67.0 + h11==0.16.0 + httpcore==1.0.9 + httpx==0.28.1 + httpx-sse==0.4.3 + idna==3.20 + importlib-metadata==9.0.1 + iniconfig==2.3.1 + itsdangerous==2.2.0 + jinja2==3.1.6 + jsonschema==4.26.0 + jsonschema-specifications==2025.9.1 + kiwisolver==1.5.1 + markupsafe==3.0.4 + matplotlib==3.10.9 + mcp==1.30.0 + meson==1.12.1 + multiprocess==0.70.19 + narwhals==2.27.1 + nest-asyncio==1.6.0 + netcdf4==1.7.5 + ninja==1.13.2 + numpy==2.5.4 + packaging==26.3 + pillow==12.3.0 + plotly==6.9.0 + pluggy==1.7.0 + psutil==7.2.2 + pycparser==3.11 + pydantic==2.14.1 + pydantic-core==2.50.1 + pydantic-settings==2.16.0 + pygments==2.21.0 + pyjwt==2.15.1 + pyparsing==3.3.3 + pytest==9.1.1 + python-dateutil==2.9.0.post0 + python-dotenv==1.2.4 + python-multipart==0.0.32 + referencing==0.37.0 + requests==2.34.2 + retrying==1.4.2 + rpds-py==2026.9.1 + scipy==1.18.1 + setuptools==84.0.0 + six==1.17.0 + sse-starlette==3.5.0 + starlette==1.8.0 + tabulate==0.10.0 + typing-extensions==4.16.0 + typing-inspection==0.4.4 + urllib3==2.8.0 + uvicorn==0.54.0 + werkzeug==3.1.9 + zipp==4.1.1 Ready: /home/jenkins/workspace/clubb_dash/.venv-python/bin/python ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-9.1.1, pluggy-1.7.0 rootdir: /home/jenkins/workspace/clubb_dash plugins: dash-3.4.0, anyio-4.15.1 collected 552 items dash_app/pytests/test_activity.py ......... [ 1%] dash_app/pytests/test_agent_integration.py .............. [ 4%] dash_app/pytests/test_agent_plot_actions.py ........ [ 5%] dash_app/pytests/test_agent_services.py ................................ [ 11%] ................. [ 14%] dash_app/pytests/test_agent_tab_registry.py ...... [ 15%] dash_app/pytests/test_agent_tuning.py ............ [ 17%] dash_app/pytests/test_analysis.py ..... [ 18%] dash_app/pytests/test_app_startup.py .......... [ 20%] dash_app/pytests/test_atlas.py . [ 20%] dash_app/pytests/test_bivariate_heatmap.py .. [ 21%] dash_app/pytests/test_callbacks_runs.py ............ [ 23%] dash_app/pytests/test_compile_tab_build_status.py ................. [ 26%] dash_app/pytests/test_custom_plot.py ........ [ 27%] dash_app/pytests/test_dashboard_activity_labels.py . [ 27%] dash_app/pytests/test_dashboard_lifecycle.py ... [ 28%] dash_app/pytests/test_dashboard_manager.py ...... [ 29%] dash_app/pytests/test_equations.py ... [ 30%] dash_app/pytests/test_fill_holes_viewer.py .... [ 30%] dash_app/pytests/test_jax_device.py ..................... [ 34%] dash_app/pytests/test_mcp_endpoint.py ... [ 35%] dash_app/pytests/test_misc_tab.py ... [ 35%] dash_app/pytests/test_netcdf.py ...... [ 36%] dash_app/pytests/test_output_directory_picker.py ...... [ 37%] dash_app/pytests/test_output_discovery.py ....... [ 39%] dash_app/pytests/test_pane_resize.py ... [ 39%] dash_app/pytests/test_param_disclosures.py ........ [ 41%] dash_app/pytests/test_pdf_contour_plot.py ...................... [ 45%] dash_app/pytests/test_performance_polling.py ....... [ 46%] dash_app/pytests/test_persistence.py .... [ 47%] dash_app/pytests/test_plot_case_cache.py .......... [ 48%] dash_app/pytests/test_plot_extraction.py ............................... [ 54%] [ 54%] dash_app/pytests/test_plot_grid_updates.py ..... [ 55%] dash_app/pytests/test_plot_help.py ... [ 55%] dash_app/pytests/test_plot_tasks.py .......... [ 57%] dash_app/pytests/test_plot_transitions.py ............. [ 60%] dash_app/pytests/test_profile_tab.py .............................. [ 65%] dash_app/pytests/test_profiles.py ...... [ 66%] dash_app/pytests/test_pyplotgen_export.py ...... [ 67%] dash_app/pytests/test_pyplotgen_output_handler.py . [ 67%] dash_app/pytests/test_reports_tab.py ....... [ 69%] dash_app/pytests/test_run_broker_simplification.py ..................... [ 73%] [ 73%] dash_app/pytests/test_run_callbacks_settings.py .............. [ 75%] dash_app/pytests/test_run_runtime.py .......... [ 77%] dash_app/pytests/test_runtime.py .. [ 77%] dash_app/pytests/test_runtime_logging.py ..... [ 78%] dash_app/pytests/test_runtime_loss_batches.py . [ 78%] dash_app/pytests/test_sam_3d_reference.py . [ 78%] dash_app/pytests/test_scm_override.py ...... [ 80%] dash_app/pytests/test_selected_build.py ..................... [ 83%] dash_app/pytests/test_state_persistence.py ............. [ 86%] dash_app/pytests/test_stats_selection.py ............................... [ 91%] [ 91%] dash_app/pytests/test_taylor_window_display.py ..... [ 92%] dash_app/pytests/test_tunable_config_save.py ............... [ 95%] dash_app/pytests/test_tune_callbacks_settings.py ............. [ 97%] dash_app/pytests/test_tutorial_tab.py .. [ 98%] dash_app/pytests/test_two_gaussian_model.py ...... [ 99%] dash_app/pytests/test_workspace_selection.py .... [100%] =============================== warnings summary =============================== dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:35: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead legacy_str = getattr(ast, "Str", None) dash_app/pytests/test_plot_case_cache.py: 4120 warnings /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:36: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead if legacy_str is not None and isinstance(node, legacy_str): dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:39: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead legacy_num = getattr(ast, "Num", None) dash_app/pytests/test_plot_case_cache.py: 4120 warnings /home/jenkins/workspace/clubb_dash/dash_app/plot_tab/case_definitions.py:40: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead if legacy_num is not None and isinstance(node, legacy_num): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html - generated xml file: /home/jenkins/workspace/clubb_dash/output/tests/pytests/dash.xml - ============================= slowest 10 durations ============================= 1.54s call dash_app/pytests/test_plot_tasks.py::test_browser_updates_selection_immediately_and_ignores_stale_results 1.24s call dash_app/pytests/test_agent_services.py::test_mcp_stdio_discovery_and_structured_error_round_trip 1.01s call dash_app/pytests/test_agent_plot_actions.py::test_profile_png_renderer_writes_a_real_png 0.87s call dash_app/pytests/test_plot_case_cache.py::test_background_worker_snapshot_resolves_in_main_process 0.72s call dash_app/pytests/test_plot_tasks.py::test_real_worker_inspects_missing_directory_and_serializes_no_update 0.67s call dash_app/pytests/test_agent_services.py::test_mcp_exposes_closed_world_typed_tools_and_annotations 0.45s call dash_app/pytests/test_run_broker_simplification.py::test_default_new_scenario_keeps_four_reservations_and_restarts_finished_case 0.43s call dash_app/pytests/test_pdf_contour_plot.py::test_pdf_compare_mode_builds_shared_axis_directory_panels 0.40s call dash_app/pytests/test_netcdf.py::test_shared_netcdf_consumers_import_as_dashboard_packages 0.37s call dash_app/pytests/test_pdf_contour_plot.py::test_all_projections_map_nonzero_clubb_probability_and_signed_transport ===================== 552 passed, 8242 warnings in 25.79s ====================== [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] junit Recording test results [Checks API] No suitable checks publisher found. [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS