Console Output

+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ulimit -s 8388608
+ python3 tests/check_mirrored_multi_col_output.py -multicol 3 -workers 2
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_column_mirror/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_column_mirror/.clubb-python-tools/bin
  uv
  uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_column_mirror/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing python requirements into /home/jenkins/workspace/clubb_column_mirror/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 12 packages in 317ms
Downloading pygments (1.2MiB)
Downloading meson (1.1MiB)
Downloading cftime (1.6MiB)
Downloading numpy (16.0MiB)
Downloading netcdf4 (10.1MiB)
 Downloaded cftime
 Downloaded netcdf4
 Downloaded meson
 Downloaded pygments
 Downloaded numpy
Prepared 12 packages in 662ms
Installed 12 packages in 40ms
 + certifi==2026.10.19
 + cftime==1.6.6.1
 + iniconfig==2.3.1
 + meson==1.12.1
 + netcdf4==1.7.5
 + ninja==1.13.2
 + numpy==2.5.4
 + packaging==26.3
 + pluggy==1.7.0
 + pygments==2.21.0
 + pytest==9.1.1
 + tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_column_mirror/.venv-python/bin/python
Logs and output: /home/jenkins/workspace/clubb_column_mirror/output/column_mirror_test/run_pmgevz88
[1/4] Configuring and compiling (gfortran, CPU)
[2/4] ABC run
  Cases: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02,
    clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds,
    dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e,
    mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara
  Grid: -multicol C8/0.2:0.8/3
  C8 = [0.2, 0.5, 0.8]
[3/4] CBA run
  Cases: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02,
    clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds,
    dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e,
    mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara
  Grid: -multicol C8/0.2:0.8/3 (columns reversed)
  C8 = [0.8, 0.5, 0.2]
[4/4] Comparison
  PASS arm_97
  PASS arm
  PASS astex_a209
  PASS atex
  PASS bomex
  PASS cgils_s11
  PASS cgils_s12
  PASS cgils_s6
  PASS clex9_nov02
  PASS clex9_oct14
  PASS dycoms2_rf01_fixed_sst
  PASS dycoms2_rf01
  PASS dycoms2_rf02_do
  PASS dycoms2_rf02_ds
  PASS dycoms2_rf02_nd
  PASS dycoms2_rf02_so
  PASS fire
  PASS gabls2
  PASS gabls3_night
  PASS gabls3
  PASS jun25_altocu
  PASS lba
  PASS mc3e
  PASS mpace_a
  PASS mpace_b_silhs
  PASS mpace_b
  PASS nov11_altocu
  PASS rico_silhs
  PASS rico
  PASS twp_ice
  PASS wangara