Started by user Gunther Huebler Obtained jenkins_tests/clubb_column_mirror/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_column_mirror [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_column_mirror # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e # timeout=10 Commit message: "Standardize script arguments (#1373)" > git rev-list --no-walk ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run Column Mirror Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + python3 tests/check_mirrored_multi_col_output.py -multicol 3 -workers 2 Installing uv 0.11.32 in /home/jenkins/workspace/clubb_column_mirror/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_column_mirror/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_column_mirror/.venv-python Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB) Downloaded cpython-3.12.13-linux-x86_64-gnu (download) Using CPython 3.12.13 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing python requirements into /home/jenkins/workspace/clubb_column_mirror/.venv-python Using Python 3.12.13 environment at: .venv-python Resolved 12 packages in 293ms Downloading meson (1.1MiB) Downloading pygments (1.2MiB) Downloading cftime (1.6MiB) Downloading numpy (15.9MiB) Downloading netcdf4 (9.7MiB) Downloaded cftime Downloaded netcdf4 Downloaded meson Downloaded pygments Downloaded numpy Prepared 12 packages in 644ms Installed 12 packages in 35ms + certifi==2026.7.22 + cftime==1.6.6 + iniconfig==2.3.0 + meson==1.12.1 + netcdf4==1.7.4 + ninja==1.13.2 + numpy==2.5.3 + packaging==26.3 + pluggy==1.6.0 + pygments==2.21.0 + pytest==9.1.1 + tabulate==0.10.0 Ready: /home/jenkins/workspace/clubb_column_mirror/.venv-python/bin/python Logs and output: /home/jenkins/workspace/clubb_column_mirror/output/column_mirror_test/run_dexx6cr8 [1/4] Configuring and compiling (gfortran, CPU) [2/4] ABC run Cases: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara Grid: -multicol C8/0.2:0.8/3 C8 = [0.2, 0.5, 0.8] [3/4] CBA run Cases: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara Grid: -multicol C8/0.2:0.8/3 (columns reversed) C8 = [0.8, 0.5, 0.2] [4/4] Comparison PASS arm_97 PASS arm PASS astex_a209 PASS atex PASS bomex PASS cgils_s11 PASS cgils_s12 PASS cgils_s6 PASS clex9_nov02 PASS clex9_oct14 PASS dycoms2_rf01_fixed_sst PASS dycoms2_rf01 PASS dycoms2_rf02_do PASS dycoms2_rf02_ds PASS dycoms2_rf02_nd PASS dycoms2_rf02_so PASS fire PASS gabls2 PASS gabls3_night PASS gabls3 PASS jun25_altocu PASS lba PASS mc3e PASS mpace_a PASS mpace_b_silhs PASS mpace_b PASS nov11_altocu PASS rico_silhs PASS rico PASS twp_ice PASS wangara [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS