Started by an SCM change Obtained jenkins_tests/clubb_column_mirror/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on mitch in /home/jenkins/workspace/clubb_column_mirror [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_column_mirror # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3 (refs/remotes/origin/master) > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3 # timeout=10 Commit message: "Initialize the project Python environment in loss and tuner runners" > git rev-list --no-walk 01b5fa7cb4bdd981c17405c3d67992080c4b2ca9 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Run Column Mirror Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + python3 tests/check_mirrored_multi_col_output.py -n 3 -nproc 2 Installing uv 0.11.32 in /home/jenkins/workspace/clubb_column_mirror/.clubb-python-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_column_mirror/.clubb-python-tools/bin uv uvx everything's installed! Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_column_mirror/.venv-python Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB) Downloaded cpython-3.12.13-linux-x86_64-gnu (download) Using CPython 3.12.13 Creating virtual environment at: .venv-python Activate with: source .venv-python/bin/activate Installing python requirements into /home/jenkins/workspace/clubb_column_mirror/.venv-python Using Python 3.12.13 environment at: .venv-python Resolved 12 packages in 258ms Downloading meson (1.1MiB) Downloading pygments (1.2MiB) Downloading cftime (1.6MiB) Downloading numpy (15.9MiB) Downloading netcdf4 (9.7MiB) Downloaded cftime Downloaded netcdf4 Downloaded meson Downloaded pygments Downloaded numpy Prepared 12 packages in 487ms Installed 12 packages in 34ms + certifi==2026.7.22 + cftime==1.6.6 + iniconfig==2.3.0 + meson==1.12.1 + netcdf4==1.7.4 + ninja==1.13.2 + numpy==2.5.3 + packaging==26.3 + pluggy==1.6.0 + pygments==2.21.0 + pytest==9.1.1 + tabulate==0.10.0 Ready: /home/jenkins/workspace/clubb_column_mirror/.venv-python/bin/python Logs and output: /home/jenkins/workspace/clubb_column_mirror/output/column_mirror_test/run_c4l3cg9w [1/4] Configuring and compiling (gfortran, CPU) [2/4] ABC run Cases: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara Grid: -hr C8/0.2:0.8/3 C8 = [0.2, 0.5, 0.8] [3/4] CBA run Cases: arm, arm_97, astex_a209, atex, bomex, cgils_s6, cgils_s11, cgils_s12, clex9_nov02, clex9_oct14, dycoms2_rf01, dycoms2_rf01_fixed_sst, dycoms2_rf02_do, dycoms2_rf02_ds, dycoms2_rf02_nd, dycoms2_rf02_so, fire, gabls2, gabls3, gabls3_night, jun25_altocu, lba, mc3e, mpace_a, mpace_b, mpace_b_silhs, nov11_altocu, rico, rico_silhs, twp_ice, wangara Grid: -hr C8/0.2:0.8/3 (columns reversed) C8 = [0.8, 0.5, 0.2] [4/4] Comparison PASS arm_97 PASS arm PASS astex_a209 PASS atex PASS bomex PASS cgils_s11 PASS cgils_s12 PASS cgils_s6 PASS clex9_nov02 PASS clex9_oct14 PASS dycoms2_rf01_fixed_sst PASS dycoms2_rf01 PASS dycoms2_rf02_do PASS dycoms2_rf02_ds PASS dycoms2_rf02_nd PASS dycoms2_rf02_so PASS fire PASS gabls2 PASS gabls3_night PASS gabls3 PASS jun25_altocu PASS lba PASS mc3e PASS mpace_a PASS mpace_b_silhs PASS mpace_b PASS nov11_altocu PASS rico_silhs PASS rico PASS twp_ice PASS wangara [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS