Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7,
netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -debug -openmp -run_tests
-- Compiling with double precision
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/include
-- OpenMP Fortran support found
-- Flags: -fopenmp
-- Includes:
-- Libraries:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/lib64/libgomp.so;/lib/x86_64-linux-gnu/libpthread.a
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Running CMake configure...
Scanning dependencies of target scm_activation_lib
Scanning dependencies of target clubb_lapack_shared
Scanning dependencies of target clubb_lapack_single
Scanning dependencies of target clubb_lapack_double
[ 17%] Built target clubb_lapack_single
[ 17%] Built target scm_activation_lib
[ 18%] Built target clubb_lapack_shared
[ 36%] Built target clubb_lapack_double
[ 36%] Built target lapack_lib
Scanning dependencies of target clubb_core_lib
[ 51%] Built target clubb_core_lib
Scanning dependencies of target microphys_utils_lib
Scanning dependencies of target text_writer_lib
Scanning dependencies of target bugsrad_lib
Scanning dependencies of target coamps_lib
[ 51%] Built target microphys_utils_lib
[ 61%] Built target coamps_lib
[ 62%] Built target text_writer_lib
Scanning dependencies of target morrison_microphys_lib
Scanning dependencies of target KK_microphys_lib
[ 67%] Built target bugsrad_lib
[ 67%] Built target morrison_microphys_lib
[ 71%] Built target KK_microphys_lib
Scanning dependencies of target silhs_lib
[ 74%] Built target silhs_lib
Scanning dependencies of target radiation_lib
Scanning dependencies of target numerical_recipes_lib
[ 77%] Built target numerical_recipes_lib
[ 79%] Built target radiation_lib
Scanning dependencies of target input_fields_lib
[ 82%] Built target input_fields_lib
Scanning dependencies of target benchmark_cases_lib
Scanning dependencies of target G_unit_test_lib
Scanning dependencies of target microphys_lib
[ 86%] Built target microphys_lib
[ 89%] Built target G_unit_test_lib
Scanning dependencies of target G_unit_tests
[ 89%] Built target G_unit_tests
[ 96%] Built target benchmark_cases_lib
Scanning dependencies of target clubb_driver_lib
[ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver.F90:255:28:
255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) )
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 97%] Linking Fortran static library libclubb_driver_lib.a
[ 97%] Built target clubb_driver_lib
Scanning dependencies of target clubb_standalone_loss
Scanning dependencies of target clubb_thread_test
Scanning dependencies of target clubb_loss_driver_test
Scanning dependencies of target clubb_tuner
[ 97%] Linking Fortran executable clubb_standalone_loss
[ 97%] Linking Fortran executable clubb_thread_test
Scanning dependencies of target clubb_driver_test
Scanning dependencies of target clubb_standalone
[ 98%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
[ 98%] Linking Fortran executable clubb_driver_test
[ 98%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[ 98%] Linking Fortran executable clubb_standalone
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:273:14:
273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:278:14:
278 | if ( any( test_correlation /= reference_correlation ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:283:14:
283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:288:14:
288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:293:14:
293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:512:14:
512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:521:14:
521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:520:14:
520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:519:14:
519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:518:14:
518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:517:14:
517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:431:14:
431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:371:14:
371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:370:14:
370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:369:14:
369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:368:14:
368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/clubb_loss_driver_test.F90:367:14:
367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 98%] Linking Fortran executable clubb_tuner
[ 98%] Built target clubb_standalone
[ 98%] Built target clubb_driver_test
[ 99%] Built target clubb_thread_test
[ 99%] Built target clubb_standalone_loss
[ 99%] Linking Fortran executable clubb_loss_driver_test
[100%] Built target clubb_tuner
[100%] Built target clubb_loss_driver_test
Install the project...
-- Install configuration: "Debug"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/G_unit_tests
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Start 1: _init_output_dir
1/11 Test #1: _init_output_dir ................. Passed 0.02 sec
Start 2: bomex_100iter
2/11 Test #2: bomex_100iter .................... Passed 0.87 sec
Start 3: wangara_100iter
3/11 Test #3: wangara_100iter .................. Passed 0.83 sec
Start 4: fire_100iter
4/11 Test #4: fire_100iter ..................... Passed 0.88 sec
Start 5: atex_100iter
5/11 Test #5: atex_100iter ..................... Passed 1.31 sec
Start 6: rico_silhs_100iter
6/11 Test #6: rico_silhs_100iter ............... Passed 1.37 sec
Start 7: arm_97_50iter
7/11 Test #7: arm_97_50iter .................... Passed 1.50 sec
Start 8: cobra_100iter
8/11 Test #8: cobra_100iter .................... Passed 1.09 sec
Start 9: arm_r8029_100iter
9/11 Test #9: arm_r8029_100iter ................ Passed 1.26 sec
Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col ................. Passed 1.84 sec
Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt ................. Passed 3.39 sec
100% tests passed, 0 tests failed out of 11
Total Test time (real) = 14.36 sec
[92mAll tests passed.[0m
