Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load intel netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -precision single -run_tests
-- Compiling with single precision
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/include
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle
mitch seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online
mitch is back online
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_intel.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle
Running CMake configure...
Scanning dependencies of target scm_activation_lib
Scanning dependencies of target clubb_lapack_shared
[ 0%] Built target scm_activation_lib
[ 1%] Built target clubb_lapack_shared
Scanning dependencies of target clubb_lapack_double
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[ 19%] Built target clubb_lapack_double
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[ 36%] Built target lapack_lib
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[ 36%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/error_code.F90.o
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[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o
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[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_helper_module.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_utilities.F90.o
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[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o
[ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o
[ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o
[ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o
[ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o
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[ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o
[ 43%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o
[ 44%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o
[ 44%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o
[ 44%] Linking Fortran static library libclubb_core_lib.a
[ 51%] Built target clubb_core_lib
Scanning dependencies of target text_writer_lib
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[ 52%] Built target text_writer_lib
[ 52%] Building Fortran object src/Microphys/Microphys_utils/CMakeFiles/microphys_utils_lib.dir/microphys_stats_vars_module.F90.o
[ 52%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_sw.F.o
[ 52%] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw.F.o
[ 62%] Built target coamps_lib
[ 62%] Linking Fortran static library libmicrophys_utils_lib.a
[ 62%] Built target microphys_utils_lib
[ 62%] Linking Fortran static library libbugsrad_lib.a
Scanning dependencies of target morrison_microphys_lib
[ 62%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o
Scanning dependencies of target KK_microphys_lib
[ 63%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o
[ 63%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o
[ 68%] Built target bugsrad_lib
[ 69%] Linking Fortran static library libKK_microphys_lib.a
[ 71%] Built target KK_microphys_lib
Scanning dependencies of target silhs_lib
[ 71%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/SILHS/silhs_importance_sample_module.F90(901): warning #5462: Global name too long, shortened from: silhs_importance_sample_moduleeight_cluster_allocation_mp_NUM_CATEGORIES_IN_CLUSTER to: s_importance_sample_moduleeight_cluster_allocation_mp_NUM_CATEGORIES_IN_CLUSTER
num_categories_in_cluster = (/ 1, 1, 1, 1, 1, 1, 1, 1 /)
------^
[ 71%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o
[ 71%] Linking Fortran static library libmorrison_microphys_lib.a
[ 71%] Built target morrison_microphys_lib
[ 71%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o
[ 71%] Linking Fortran static library libsilhs_lib.a
[ 74%] Built target silhs_lib
Scanning dependencies of target numerical_recipes_lib
Scanning dependencies of target radiation_lib
[ 74%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o
[ 77%] Built target numerical_recipes_lib
[ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o
[ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o
[ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o
[ 77%] Linking Fortran static library libradiation_lib.a
[ 79%] Built target radiation_lib
Scanning dependencies of target input_fields_lib
[ 79%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
[ 80%] Linking Fortran static library libinput_fields_lib.a
[ 82%] Built target input_fields_lib
Scanning dependencies of target microphys_lib
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[ 82%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[ 82%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[ 83%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
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[ 83%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
[ 83%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
[ 83%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[ 83%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o
[ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o
[ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[ 85%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[ 85%] Linking Fortran static library libbenchmark_cases_lib.a
[ 92%] Built target benchmark_cases_lib
[ 92%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[ 92%] Linking Fortran static library libG_unit_test_lib.a
[ 94%] Built target G_unit_test_lib
[ 94%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[ 94%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[ 95%] Linking Fortran static library libmicrophys_lib.a
[ 96%] Built target microphys_lib
Scanning dependencies of target G_unit_tests
Scanning dependencies of target clubb_driver_lib
[ 96%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[ 97%] Linking Fortran executable G_unit_tests
[ 97%] Built target G_unit_tests
[ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
[ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
[ 97%] Linking Fortran static library libclubb_driver_lib.a
[ 97%] Built target clubb_driver_lib
Scanning dependencies of target clubb_tuner
Scanning dependencies of target clubb_loss_driver_test
Scanning dependencies of target clubb_standalone
Scanning dependencies of target clubb_standalone_loss
Scanning dependencies of target clubb_thread_test
[ 98%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
Scanning dependencies of target clubb_driver_test
[ 98%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[ 99%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[100%] Linking Fortran executable clubb_standalone
[100%] Linking Fortran executable clubb_thread_test
[100%] Linking Fortran executable clubb_driver_test
[100%] Linking Fortran executable clubb_standalone_loss
[100%] Built target clubb_standalone
[100%] Built target clubb_thread_test
[100%] Built target clubb_driver_test
[100%] Built target clubb_standalone_loss
[100%] Linking Fortran executable clubb_loss_driver_test
[100%] Built target clubb_loss_driver_test
[100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[100%] Linking Fortran executable clubb_tuner
[100%] Built target clubb_tuner
Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_tuner" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/G_unit_tests" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_thread_test" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone_loss
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_loss_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib:/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-inkjvmgdy5ao7uwihl6lzsnlpstmyoyt/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle
Start 1: _init_output_dir
1/11 Test #1: _init_output_dir ................. Passed 0.05 sec
Start 2: bomex_100iter
2/11 Test #2: bomex_100iter .................... Passed 1.22 sec
Start 3: wangara_100iter
3/11 Test #3: wangara_100iter .................. Passed 1.16 sec
Start 4: fire_100iter
4/11 Test #4: fire_100iter ..................... Passed 1.18 sec
Start 5: atex_100iter
5/11 Test #5: atex_100iter ..................... Passed 1.46 sec
Start 6: rico_silhs_100iter
6/11 Test #6: rico_silhs_100iter ............... Passed 1.64 sec
Start 7: arm_97_50iter
7/11 Test #7: arm_97_50iter .................... Passed 1.52 sec
Start 8: cobra_100iter
8/11 Test #8: cobra_100iter .................... Passed 1.32 sec
Start 9: arm_r8029_100iter
9/11 Test #9: arm_r8029_100iter ................ Passed 1.35 sec
Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col ................. Passed 0.67 sec
Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt ................. Passed 2.79 sec
100% tests passed, 0 tests failed out of 11
Total Test time (real) = 14.37 sec
[92mAll tests passed.[0m
