Started by an SCM change Obtained jenkins_tests/clubb_cmake_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_cmake_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/clubb_cmake_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 7c083496c42caa1b7d18c781134f0cc18ae94748 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 7c083496c42caa1b7d18c781134f0cc18ae94748 # timeout=10 Commit message: "Building varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB test" > git rev-list --no-walk 955aa780e3a47b6accf7af68d85f76ad53baff39 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile gfortran) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -run_tests -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_driver_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone_loss -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_loss_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.04 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 0.63 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 0.62 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 0.61 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 0.90 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 0.77 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 0.89 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 0.73 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 0.75 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 0.96 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 1.36 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 8.28 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile gfortran: openmp+debug) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -debug -openmp -run_tests -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include -- OpenMP Fortran support found -- Flags: -fopenmp -- Includes: -- Libraries:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/lib64/libgomp.so;/lib/x86_64-linux-gnu/libpthread.a -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Debug" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.05 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 1.12 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 0.97 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 1.02 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 1.59 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 1.41 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 1.90 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 1.31 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 1.41 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 2.21 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 3.92 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 16.93 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile ifx) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load intel netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -run_tests -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_intel.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_driver_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_standalone_loss -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_loss_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.06 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 0.98 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 0.98 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 0.97 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 1.20 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 1.26 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 1.36 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 1.19 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 1.18 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 0.70 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 2.14 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 12.01 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile ifx: single precision) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load intel netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -precision single -run_tests -- Compiling with single precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_intel.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_driver_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone_loss -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_loss_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.03 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 1.04 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 0.89 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 0.97 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 1.33 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 1.23 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 1.29 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 1.08 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 1.10 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 0.60 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 2.22 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 11.79 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile nvfortran) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -run_tests -- Configuring for CPU build -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_nvhpc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_driver_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_standalone_loss -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_loss_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.04 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 1.36 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 1.15 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 1.20 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 1.74 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 1.67 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 1.94 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 1.52 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 1.61 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 0.81 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 2.90 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 15.95 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile nvfortran: openacc) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -gpu openacc -run_tests -- Configuring for OpenACC GPU build -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_nvhpc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_driver_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_standalone_loss -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_loss_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.05 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 4.00 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 3.64 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 3.68 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 4.82 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 5.00 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 5.96 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 4.50 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 4.71 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 2.87 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 19.84 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 59.11 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS