Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -run_tests
-- Compiling with double precision
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Running CMake configure...
[1/39] Building Fortran preprocessed src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90-pp.f90
[2/39] Building Fortran preprocessed src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90-pp.f90
[3/39] Building Fortran preprocessed src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90-pp.f90
[4/39] Building Fortran preprocessed src/CMakeFiles/clubb_tuner.dir/error.F90-pp.f90
[5/39] Building Fortran preprocessed src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90-pp.f90
[6/39] Building Fortran preprocessed src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90-pp.f90
[7/39] Building Fortran preprocessed src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90-pp.f90
[8/39] Building Fortran preprocessed src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90-pp.f90
[9/39] Building Fortran preprocessed src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90-pp.f90
[10/39] Building Fortran preprocessed src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90-pp.f90
[11/39] Building Fortran preprocessed src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90-pp.f90
[12/39] Generating Fortran dyndep file src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Fortran.dd
[13/44] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90.o
[14/39] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/mixing_length.F90:1096:16:
1096 | if ( abs( dCAPE_dz_j - dCAPE_dz_j_minus_1 ) * 2 <= &
| ^
Warning: 'dcape_dz_j' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/mixing_length.F90:730:42:
730 | real( kind = core_rknd ) :: dCAPE_dz_j, dCAPE_dz_j_minus_1, dCAPE_dz_j_plus_1
| ^
note: 'dcape_dz_j' was declared here
[15/39] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o
[16/39] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o
[17/39] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o
[18/39] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o
[19/39] Linking Fortran static library src/CLUBB_core/libclubb_core_lib.a
[20/39] Generating Fortran dyndep file src/Input_fields/CMakeFiles/input_fields_lib.dir/Fortran.dd
[21/39] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
[22/39] Linking Fortran static library src/Input_fields/libinput_fields_lib.a
[23/42] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd
[24/42] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[25/42] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[26/42] Linking Fortran static library src/Microphys/libmicrophys_lib.a
[27/42] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd
[28/43] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[29/43] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[30/43] Linking Fortran executable src/G_unit_tests
[31/43] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[32/43] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
[33/42] Linking Fortran static library src/libclubb_driver_lib.a
[34/42] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd
[35/43] Linking Fortran executable src/clubb_thread_test
[36/43] Linking Fortran executable src/clubb_standalone_loss
[37/43] Linking Fortran executable src/clubb_loss_driver_test
[38/43] Linking Fortran executable src/clubb_standalone
[39/43] Linking Fortran executable src/clubb_driver_test
[40/43] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[41/42] Linking Fortran executable src/clubb_tuner
[41/42] Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone_loss
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_loss_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Start 1: _init_output_dir
1/11 Test #1: _init_output_dir ................. Passed 0.05 sec
Start 2: bomex_100iter
2/11 Test #2: bomex_100iter .................... Passed 0.65 sec
Start 3: wangara_100iter
3/11 Test #3: wangara_100iter .................. Passed 0.60 sec
Start 4: fire_100iter
4/11 Test #4: fire_100iter ..................... Passed 0.62 sec
Start 5: atex_100iter
5/11 Test #5: atex_100iter ..................... Passed 0.82 sec
Start 6: rico_silhs_100iter
6/11 Test #6: rico_silhs_100iter ............... Passed 0.69 sec
Start 7: arm_97_50iter
7/11 Test #7: arm_97_50iter .................... Passed 0.82 sec
Start 8: cobra_100iter
8/11 Test #8: cobra_100iter .................... Passed 0.68 sec
Start 9: arm_r8029_100iter
9/11 Test #9: arm_r8029_100iter ................ Passed 0.75 sec
Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col ................. Passed 0.95 sec
Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt ................. Passed 1.28 sec
100% tests passed, 0 tests failed out of 11
Total Test time (real) = 7.95 sec
[92mAll tests passed.[0m
