Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl,
netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -debug -openmp -run_tests
-- Compiling with double precision
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/include
-- OpenMP Fortran support found
-- Flags: -fopenmp
-- Includes:
-- Libraries:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-m5i6qvtqmd4lm4sd2zvpgk75ong5ehbm/lib64/libgomp.so;/lib/x86_64-linux-gnu/libpthread.a
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Running CMake configure...
Scanning dependencies of target clubb_lapack_shared
Scanning dependencies of target scm_activation_lib
[ 0%] Built target clubb_lapack_shared
Scanning dependencies of target clubb_lapack_double
[ 0%] Built target scm_activation_lib
Scanning dependencies of target clubb_lapack_single
[ 19%] Built target clubb_lapack_double
[ 37%] Built target clubb_lapack_single
[ 37%] Built target lapack_lib
Scanning dependencies of target clubb_core_lib
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/model_flags.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf_main.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Skx_module.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_solver_wrapper.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/interpolation.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_class.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_hybrid_pdf_main.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/remapping_module.F90:1210:43:
1210 | if(f(i,k+1)*f(i,k-1)<zero .and. df2(i,k)/=zero) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/remapping_module.F90:1104:15:
1104 | if(dm(i) == zero) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o
[ 41%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o
[ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o
[ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_windm_edsclrm_module.F90:50:78:
50 | order_xp2_xpyp, order_wp2_wp3, order_windm, &
| 1
Warning: Unused dummy argument 'order_windm' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_windm_edsclrm_module.F90:50:65:
50 | order_xp2_xpyp, order_wp2_wp3, order_windm, &
| 1
Warning: Unused dummy argument 'order_wp2_wp3' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_windm_edsclrm_module.F90:50:50:
50 | order_xp2_xpyp, order_wp2_wp3, order_windm, &
| 1
Warning: Unused dummy argument 'order_xp2_xpyp' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/pdf_closure_module.F90:3610:52:
3610 | l_predict_upwp_vpwp, & ! Intent(in)
| 1
Warning: Unused dummy argument 'l_predict_upwp_vpwp' at (1) [-Wunused-dummy-argument]
[ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o
[ 42%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o
[ 42%] Linking Fortran static library libclubb_core_lib.a
[ 52%] Built target clubb_core_lib
Scanning dependencies of target microphys_utils_lib
Scanning dependencies of target text_writer_lib
Scanning dependencies of target bugsrad_lib
Scanning dependencies of target coamps_lib
[ 53%] Built target text_writer_lib
[ 54%] Built target microphys_utils_lib
[ 59%] Built target bugsrad_lib
[ 69%] Built target coamps_lib
Scanning dependencies of target morrison_microphys_lib
Scanning dependencies of target KK_microphys_lib
[ 69%] Built target morrison_microphys_lib
[ 73%] Built target KK_microphys_lib
Scanning dependencies of target silhs_lib
[ 76%] Built target silhs_lib
Scanning dependencies of target radiation_lib
Scanning dependencies of target numerical_recipes_lib
[ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o
[ 80%] Built target numerical_recipes_lib
[ 80%] Linking Fortran static library libradiation_lib.a
[ 81%] Built target radiation_lib
Scanning dependencies of target input_fields_lib
[ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o
[ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o
[ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/input_fields.F90:2877:22:
2877 | base_unit_number = 15
| 1
Warning: Unused parameter 'base_unit_number' declared at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/input_fields.F90:151:8:
151 | use constants_clubb, only: fstderr, fstdout ! Constants
| 1
Warning: Unused parameter 'fstdout' which has been explicitly imported at (1) [-Wunused-parameter]
[ 81%] Linking Fortran static library libinput_fields_lib.a
[ 84%] Built target input_fields_lib
Scanning dependencies of target benchmark_cases_lib
Scanning dependencies of target microphys_lib
Scanning dependencies of target G_unit_test_lib
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[ 85%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[ 85%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[ 85%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/Microphys/pdf_hydromet_microphys_wrapper.F90:15:29:
15 | itime, dt_main, vert_decorr_coef, & ! In
| 1
Warning: Unused dummy argument 'dt_main' at (1) [-Wunused-dummy-argument]
[ 85%] Linking Fortran static library libbenchmark_cases_lib.a
[ 92%] Built target benchmark_cases_lib
[ 92%] Linking Fortran static library libG_unit_test_lib.a
[ 95%] Built target G_unit_test_lib
[ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[ 96%] Linking Fortran static library libmicrophys_lib.a
[ 97%] Built target microphys_lib
Scanning dependencies of target G_unit_tests
Scanning dependencies of target clubb_driver_lib
[ 97%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[ 98%] Linking Fortran executable G_unit_tests
[ 98%] Built target G_unit_tests
[ 98%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/clubb_driver.F90:5867:25:
5867 | ( gr, iunit, hydromet_dim, hm_metadata, & ! In
| 1
Warning: Unused dummy argument 'iunit' at (1) [-Wunused-dummy-argument]
[ 98%] Linking Fortran static library libclubb_driver_lib.a
[ 98%] Built target clubb_driver_lib
Scanning dependencies of target clubb_standalone
Scanning dependencies of target clubb_thread_test
Scanning dependencies of target clubb_driver_test
Scanning dependencies of target clubb_tuner
[ 98%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[ 98%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[ 99%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[ 99%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[ 99%] Linking Fortran executable clubb_standalone
[ 99%] Linking Fortran executable clubb_thread_test
[ 99%] Linking Fortran executable clubb_driver_test
[ 99%] Built target clubb_thread_test
[ 99%] Built target clubb_driver_test
[ 99%] Built target clubb_standalone
[ 99%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[100%] Linking Fortran executable clubb_tuner
[100%] Built target clubb_tuner
Install the project...
-- Install configuration: "Debug"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Start 1: _init_output_dir
1/11 Test #1: _init_output_dir ................. Passed 0.02 sec
Start 2: bomex_100iter
2/11 Test #2: bomex_100iter .................... Passed 1.60 sec
Start 3: wangara_100iter
3/11 Test #3: wangara_100iter .................. Passed 1.46 sec
Start 4: fire_100iter
4/11 Test #4: fire_100iter ..................... Passed 1.46 sec
Start 5: atex_100iter
5/11 Test #5: atex_100iter ..................... Passed 1.96 sec
Start 6: rico_silhs_100iter
6/11 Test #6: rico_silhs_100iter ............... Passed 1.91 sec
Start 7: arm_97_50iter
7/11 Test #7: arm_97_50iter .................... Passed 2.32 sec
Start 8: cobra_100iter
8/11 Test #8: cobra_100iter .................... Passed 1.71 sec
Start 9: arm_r8029_100iter
9/11 Test #9: arm_r8029_100iter ................ Passed 1.89 sec
Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col ................. Passed 1.82 sec
Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt ................. Passed 4.95 sec
100% tests passed, 0 tests failed out of 11
Total Test time (real) = 21.10 sec
[92mAll tests passed.[0m
