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Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
legacy method selector. Keep the sampled states and comparison tolerance.
This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
git- clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py9773149413191463435fa778c5c2c5abe2296bb71792568551000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate restored legacy mixing-length reference calls
Master restored a reference test using the removed imu/newmu interface.
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This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
- clubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py5c831d1c5350e111a1cd16fdfbb6a8999bc1fdb81792568751000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAlign API multiplier tests with positive bounds
Use a valid positive launch multiplier in the reach comparison and expect the strictly positive hard bound. Startup validation retains explicit rejection coverage for zero. Both affected API tests pass; rerun the Python Jenkins job on this checkpoint.
2026-10-21 02:45:51 -05005c831d1c5350e111a1cd16fdfbb6a8999bc1fdb8Align API multiplier tests with positive boundseditclubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyeditclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py
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jax fortran oracle tests (#1404)
Restored clubb_jax vs clubb_f2py fortran bindings tests that compare the outputs of clubb_jax functions directly to their compiled fortran counterparts.
clubb_jax changes are minimal:
Use hardcoded pi that matches the pi used in fortran instead of jnp.pi
remove the clubb_release hardcoded path from the gases_ckd_data.py parser.
2026-10-20 14:57:07 -0500bb08268b3348ef71f7eec35eb0fb5ee4eb10197dRestore jax fortran oracle tests 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- .agents/skills/clubb-finalization/SKILL.md.agents/skills/clubb-testing-and-reporting/SKILL.mdca84407de0b4dff85f5da42c649e537c764c7dcb1792545867000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRequire completed validation before branch finalization
Treat urgency as approval to proceed without routine review pauses while
preserving the stop for substantive unaccepted issues. Require reviewed test
results, including relevant Jenkins jobs, before completion, with a narrow
trivial-prose exception and owner checks where no Jenkins job applies.
Both skill validators and relative-link checks pass.
2026-10-20 20:24:27 -0500ca84407de0b4dff85f5da42c649e537c764c7dcbRequire completed validation before branch finalizationedit.agents/skills/clubb-testing-and-reporting/SKILL.mdedit.agents/skills/clubb-finalization/SKILL.md
- clubb_jax/src/CLUBB_core/fill_holes.py.agents/skills/clubb-documentation/language/SKILL.mdclubb_jax/pytests/auto_llm_generated_pytests/test_multicolumn_microphys_adapters.pyclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.py.agents/skills/clubb-documentation/change-messages/SKILL.md82c8fdb39580f015d26f9cb021b8376696d96b7f1792549343000https://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFix per-column inputs in JAX microphysics (#1407)
* Align JAX microphysics with per-column Fortran inputs
Pass each column’s parameters into PDF preparation and its own grid spacing into hydrometeor hole filling after the master multi-column fix. The previous scalar remapping disagreed with current Fortran from step 2.
Six focused eager/JIT checks pass, covering column independence, conserved mass and derivatives. Both regressions detect the retained pre-fix adapters; full case comparisons are in progress.
(cherry picked from commit 7fc8280d9ce3fe0ec51bf5e7f3cfd3a0e7c8838a)
* Explain PR problems before describing their solutions
Change-first PR openings make their motivation harder to follow. Use
Motivation and Change to describe the problem first, then its cause and
the proposed solution; align the language guidance with that order.
Both documentation skills validate, and relative-link checks pass.
2026-10-20 21:22:23 -050082c8fdb39580f015d26f9cb021b8376696d96b7fFix per-column inputs in JAX microphysics (#1407)edit.agents/skills/clubb-documentation/change-messages/SKILL.mdedit.agents/skills/clubb-documentation/language/SKILL.mdaddclubb_jax/pytests/auto_llm_generated_pytests/test_multicolumn_microphys_adapters.pyeditclubb_jax/src/CLUBB_core/fill_holes.pyeditclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.py
- src/CLUBB_core/parameters_tunable.F90doc/coherence_mixing_length.mdutilities/clubb_settings_validation.pyutilities/pytests/test_settings_rules.pytests/run_clubb_settings_validation_test.pyclubb_jax/src/CLUBB_core/parameters_tunable.pysrc/CLUBB_core/mixing_length.F9068d2474118daf0de3fd3d002a1e8944713757bc81792568162000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRequire positive launch-energy scaling and clarify parcel averaging
Reject zero Lscale_tke_multiplier consistently in Fortran, JAX and the
settings validator. Remove redundant nonnegative-TKE handling from the
coherent parcel calculation and retain the reviewed explanatory cleanup.
The settings-rule checks (19 tests), native/Python bounds parity and
public native/JAX startup checks pass, including zero and negative inputs.
Full Jenkins branch validation follows the master merge.
2026-10-21 02:36:02 -050068d2474118daf0de3fd3d002a1e8944713757bc8Require positive launch-energy scaling and clarify parcel averagingedittests/run_clubb_settings_validation_test.pyeditdoc/coherence_mixing_length.mdeditutilities/clubb_settings_validation.pyeditutilities/pytests/test_settings_rules.pyeditclubb_jax/src/CLUBB_core/parameters_tunable.pyeditsrc/CLUBB_core/parameters_tunable.F90editsrc/CLUBB_core/mixing_length.F90
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#3636false3611101FAILURE1792482044649https://carson.math.uwm.edu/jenkins/job/clubb_branch_jax/36/- src/generalized_grid_test.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/CLUBB_core/fill_holes.F90clubb_python_api/clubb_f2py.pyfsrc/G_unit_test_types/mu_sigma_hm_tests.F90clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_precipitation_fraction.pyclubb_python_api/f2py_fortran_wrappers/precipitation_fraction_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/precipitation_fraction.pysrc/Microphys/pdf_hydromet_microphys_wrapper.F90src/CLUBB_core/precipitation_fraction.F908369512fcc6487603491e12ac13376de2aec2a0b1792463005000https://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb params 1d to 2d fix (#1392)
* Fix: clubb params is a shape (ngrdcol,nparams) that is passed into subroutines that expect a 1d array
Also fixed dependent other places in code and changed the python api. This is BIT_CHANGING for multicol.
If a 2d array is passed into a function that expects the arr to be 1d fortran just passes the first col of the arr.
Therefore the changes dont affect single col runs. For multicol runs other indexing is needed
* fill_holes_vertical_api expects the passed gr%dzt to have shape(ngrdcol,nz) but the code passes the whole gr%dzt array although each column is traversed one by one.
So ngrdcol=1 is passed each time.
No effect on single col, as with ngrdcol = 1, gr%dzt and gr%dzt(1:1,:) are the same.
Affects multicol if l_hole_fill = .true. and the hydrometeor is a mixing ratio (name starts with r) and
some value is actually negative
Therefore BIT_CHANGING
2026-10-19 21:23:25 -05008369512fcc6487603491e12ac13376de2aec2a0bClubb params 1d to 2d fix (#1392)editsrc/G_unit_test_types/mu_sigma_hm_tests.F90editsrc/CLUBB_core/fill_holes.F90editsrc/CLUBB_core/precipitation_fraction.F90editclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/precipitation_fraction.pyeditclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_precipitation_fraction.pyeditclubb_python_api/f2py_fortran_wrappers/precipitation_fraction_wrapper.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/generalized_grid_test.F90
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Pass each column’s parameters into PDF preparation and its own grid spacing into hydrometeor hole filling after the master multi-column fix. The previous scalar remapping disagreed with current Fortran from step 2.
Six focused eager/JIT checks pass, covering column independence, conserved mass and derivatives. Both regressions detect the retained pre-fix adapters; full case comparisons are in progress.
2026-10-20 02:35:51 -05007fc8280d9ce3fe0ec51bf5e7f3cfd3a0e7c8838aAlign JAX microphysics with per-column Fortran inputseditclubb_jax/src/CLUBB_core/fill_holes.pyeditclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_multicolumn_microphys_adapters.py
- tests/run_jax_vs_fortran_cases.py05e5a9ebe39c01681f423a7dc09ef62a4222b1d01792481763000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduKeep the legacy DYCOMS comparison below its roundoff-sensitive interval
Reduce the dycoms2_rf02_ds curated limit from 240 to the requested 230 steps. Historical Jenkins runs first fail the cumulative comparison at step 236; matched local runs fail at 242. Tolerances and saved fields stay unchanged.
A one-ULP entrainment perturbation in Fortran alone produces a similar late failure. Identical-input parcel checks agree within 6.3e-9 m, and the matched historical coherent run agrees through 360 steps. This evidence concerns the pre-master multi-column configuration; corrected-master validation is in progress.
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#3333false3311091ABORTED1792476444387https://carson.math.uwm.edu/jenkins/job/clubb_branch_jax/33/- src/generalized_grid_test.F90src/CLUBB_core/setup_clubb_pdf_params.F90clubb_python_api/clubb_f2py.pyfsrc/CLUBB_core/fill_holes.F90clubb_python_api/f2py_fortran_wrappers/precipitation_fraction_wrapper.F90clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_precipitation_fraction.pysrc/G_unit_test_types/mu_sigma_hm_tests.F90clubb_python_api/clubb_python/CLUBB_core/precipitation_fraction.pysrc/Microphys/pdf_hydromet_microphys_wrapper.F90src/CLUBB_core/precipitation_fraction.F908369512fcc6487603491e12ac13376de2aec2a0b1792463005000https://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb params 1d to 2d fix (#1392)
* Fix: clubb params is a shape (ngrdcol,nparams) that is passed into subroutines that expect a 1d array
Also fixed dependent other places in code and changed the python api. This is BIT_CHANGING for multicol.
If a 2d array is passed into a function that expects the arr to be 1d fortran just passes the first col of the arr.
Therefore the changes dont affect single col runs. For multicol runs other indexing is needed
* fill_holes_vertical_api expects the passed gr%dzt to have shape(ngrdcol,nz) but the code passes the whole gr%dzt array although each column is traversed one by one.
So ngrdcol=1 is passed each time.
No effect on single col, as with ngrdcol = 1, gr%dzt and gr%dzt(1:1,:) are the same.
Affects multicol if l_hole_fill = .true. and the hydrometeor is a mixing ratio (name starts with r) and
some value is actually negative
Therefore BIT_CHANGING
2026-10-19 21:23:25 -05008369512fcc6487603491e12ac13376de2aec2a0bClubb params 1d to 2d fix (#1392)editclubb_python_api/clubb_python/CLUBB_core/precipitation_fraction.pyeditclubb_python_api/f2py_fortran_wrappers/precipitation_fraction_wrapper.F90editclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_precipitation_fraction.pyeditsrc/CLUBB_core/setup_clubb_pdf_params.F90editclubb_python_api/clubb_f2py.pyfeditsrc/CLUBB_core/fill_holes.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/generalized_grid_test.F90editsrc/G_unit_test_types/mu_sigma_hm_tests.F90editsrc/CLUBB_core/precipitation_fraction.F90
- clubb_jax/tests/run_jax_timestep_gradient_test.pyclubb_python_api/pytests/auto_llm_generated_pytests/test_python_port_api_coverage.pyclubb_jax/README.mddoc/coherence_mixing_length.mdbd81f6f13451574e5b21cbd0a94d682e599b97b61792476385000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUse configured mixing length in driver derivative checks
Remove method overrides from the general timestep autodiff check and keep run instructions out of the scientific method note. Exclude the native mixing-length routine's internal timers from Python API-export requirements.
BOMEX and ATEX default-method gradient, JVP, finite-difference and eager/JIT checks pass. The focused cross-module API audit passes with its other expectations retained.
2026-10-20 01:06:25 -0500bd81f6f13451574e5b21cbd0a94d682e599b97b6Use configured mixing length in driver derivative checkseditclubb_python_api/pytests/auto_llm_generated_pytests/test_python_port_api_coverage.pyeditclubb_jax/README.mdeditclubb_jax/tests/run_jax_timestep_gradient_test.pyeditdoc/coherence_mixing_length.md
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Keep the standard case and Tune configurations on legacy parcels while comparing legacy and coherent methods. All 11 Tune preset checks pass with the restored default.
2026-10-18 18:40:10 -0500ecdac82cee52828df6a231d60b8edb4ad471d4aaRestore legacy mixing length as the defaulteditinput/parameter_and_flag_configs/default/configurable_model_flags.in
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Keep the original pressure JIT and remove the roundoff workaround. Shorten only the RICO comparison window by ten steps; retain its timestep and numerical thresholds.
2026-10-17 14:55:40 -0500c3610159574edce20568bd127e28ec5bb6685739Limit RICO comparison to 370 stepseditclubb_jax/src/CLUBB_core/calc_pressure.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_case_cache_reuse.pyedittests/run_jax_vs_fortran_cases.py
- .agents/skills/clubb-finalization/SKILL.mdAGENTS.md.agents/skills/clubb-numerical-diagnosis/SKILL.md.agents/skills/clubb-testing-and-reporting/SKILL.mdd851b14641f3119dbce3e653cc5394d43a4d6b1e1792266942000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduClarify investigation and comparison guidance
Require acceptance before substantive investigation fixes and late-stage changes. Prefer test-level remedies for confirmed roundoff and report relevant Jenkins stages against master.
2026-10-17 14:55:42 -0500d851b14641f3119dbce3e653cc5394d43a4d6b1eClarify investigation and comparison guidanceedit.agents/skills/clubb-finalization/SKILL.mdedit.agents/skills/clubb-numerical-diagnosis/SKILL.mdedit.agents/skills/clubb-testing-and-reporting/SKILL.mdeditAGENTS.md
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Compile only the vertical recurrence so repeat initialization keeps its cache without fusing the surrounding interpolation. Focused pressure and cache-reuse checks pass; full RICO comparison is pending.
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Hueblerhuebler@uwm.eduKeep pytest promotion paths stable and validate API fixtures
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- dash_app/pytests/auto_llm_generated_pytests/.gitkeeptuner/pytests/auto_llm_generated_pytests/.gitkeepjenkins_tests/clubb_jax_pytests/Jenkinsfileutilities/sens_matrix/pytest.ini.gitignoreutilities/pytests/auto_llm_generated_pytests/README.mdjenkins_tests/clubb_dash/Jenkinsfiledash_app/pytests/auto_llm_generated_pytests/README.mdjenkins_tests/clubb_jax/Jenkinsfiletests/pytests/auto_llm_generated_pytests/.gitkeeptests/README.mdtuner/pytests/auto_llm_generated_pytests/README.mdutilities/sens_matrix/test_analyzeSensMatrix.pyclubb_jax/README.mdtests/pytests/auto_llm_generated_pytests/README.mdutilities/pytests/auto_llm_generated_pytests/.gitkeep53e40d747c3bbee9d067136b700534b58969059d1791156827000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduApply pytest review revisions and consolidate JAX CI
2026-10-04 18:33:47 -050053e40d747c3bbee9d067136b700534b58969059dApply pytest review revisions and consolidate JAX CIaddutilities/pytests/auto_llm_generated_pytests/README.mddeletedash_app/pytests/auto_llm_generated_pytests/.gitkeepadddash_app/pytests/auto_llm_generated_pytests/README.mddeletejenkins_tests/clubb_jax_pytests/Jenkinsfileeditclubb_jax/README.mdaddtests/pytests/auto_llm_generated_pytests/README.mddeletetuner/pytests/auto_llm_generated_pytests/.gitkeepedittests/README.mdaddutilities/sens_matrix/test_analyzeSensMatrix.pyaddutilities/sens_matrix/pytest.inideleteutilities/pytests/auto_llm_generated_pytests/.gitkeepedit.gitignoreeditjenkins_tests/clubb_dash/Jenkinsfiledeletetests/pytests/auto_llm_generated_pytests/.gitkeepeditjenkins_tests/clubb_jax/Jenkinsfileaddtuner/pytests/auto_llm_generated_pytests/README.md
githttps://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttps://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse22https://carson.math.uwm.edu/jenkins/job/clubb_branch_jax/22/20https://carson.math.uwm.edu/jenkins/job/clubb_branch_jax/20/BRANCHorigin/jax_silhsStarted by user Gunther HueblerhueblerGunther Huebler20648ab0080cab3b33ba9eb7525b598b9e882118e2648ab0080cab3b33ba9eb7525b598b9e882118e2refs/remotes/origin/jax_silhs648ab0080cab3b33ba9eb7525b598b9e882118e2648ab0080cab3b33ba9eb7525b598b9e882118e2refs/remotes/origin/jax_silhs129ba460711595cf96ca978a2f726cdb0e2010d15e9ba460711595cf96ca978a2f726cdb0e2010d15erefs/remotes/origin/jax_microphys9ba460711595cf96ca978a2f726cdb0e2010d15e9ba460711595cf96ca978a2f726cdb0e2010d15erefs/remotes/origin/jax_microphys19e320b09e81659767a0110c7d8c6b626854ec7a21e320b09e81659767a0110c7d8c6b626854ec7a21refs/remotes/origin/pytest_cleanupe320b09e81659767a0110c7d8c6b626854ec7a21e320b09e81659767a0110c7d8c6b626854ec7a21refs/remotes/origin/pytest_cleanup5015ae8fae1260bf888d109b1c408ba7bdf424bcc015ae8fae1260bf888d109b1c408ba7bdf424bccrefs/remotes/origin/test_different_f90_vs_jax_flags015ae8fae1260bf888d109b1c408ba7bdf424bcc015ae8fae1260bf888d109b1c408ba7bdf424bccrefs/remotes/origin/test_different_f90_vs_jax_flags7417f2207397395d5681d8322c590bbc0bc302a6e417f2207397395d5681d8322c590bbc0bc302a6erefs/remotes/origin/F90-fix-multicol+l_add_dycore_grid417f2207397395d5681d8322c590bbc0bc302a6e417f2207397395d5681d8322c590bbc0bc302a6erefs/remotes/origin/F90-fix-multicol+l_add_dycore_grid17996c5f98796bec7a14a0c5b47dcf17c07b1c452f996c5f98796bec7a14a0c5b47dcf17c07b1c452frefs/remotes/origin/script_arg_cleanup996c5f98796bec7a14a0c5b47dcf17c07b1c452f996c5f98796bec7a14a0c5b47dcf17c07b1c452frefs/remotes/origin/script_arg_cleanup1488f030077490c706dcbbeac4e9b662ad39834c6388f030077490c706dcbbeac4e9b662ad39834c63refs/remotes/origin/jenkins_test_cleanup88f030077490c706dcbbeac4e9b662ad39834c6388f030077490c706dcbbeac4e9b662ad39834c63refs/remotes/origin/jenkins_test_cleanup34ccaf683a6e835e4d761b5a448c41dc6ffe27fa14ccaf683a6e835e4d761b5a448c41dc6ffe27fa1refs/remotes/origin/jenkins_jax_vs_fortran4ccaf683a6e835e4d761b5a448c41dc6ffe27fa14ccaf683a6e835e4d761b5a448c41dc6ffe27fa1refs/remotes/origin/jenkins_jax_vs_fortran648ab0080cab3b33ba9eb7525b598b9e882118e2648ab0080cab3b33ba9eb7525b598b9e882118e2refs/remotes/origin/jax_silhshttps://github.com/larson-group/clubb.gitfalse#2060198043617010clubb_branch_jax #2020false209751FAILURE1791156201873https://carson.math.uwm.edu/jenkins/job/clubb_branch_jax/20/- src/CLUBB_core/stats_netcdf.F905a618af3b1fa969ad22fc01e46db81f7bc71f4491791058620000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSerialize NetCDF statistics output across OpenMP threads
2026-10-03 15:17:00 -05005a618af3b1fa969ad22fc01e46db81f7bc71f449Serialize NetCDF statistics output across OpenMP threadseditsrc/CLUBB_core/stats_netcdf.F90
- run_scripts/run_clubb_w_varying_flags.pyrun_scripts/run_tuner.pyjenkins_tests/clubb_python/Jenkinsfilejenkins_tests/clubb_tuner/Jenkinsfilerun_scripts/README.mdtests/test_monoflux_limiter_GPU.pytests/pytests/test_bindiff_report.pyutilities/pytests/test_time_clubb.pyCMakeLists.txtexperimental/experimental_pdfs/python/dash_additions/utilities/refresh_pdf9_parcel_ensemble_lab.pytests/README.mdtests/run_clubb_conv_test.pyrun_scripts/run_scm_loss.pypostprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.shtests/check_budget_balance.pyutilities/time_clubb.pyutilities/pytests/test_run_script_arguments.pyutilities/create_case_namelist.pytests/run_jax_vs_fortran_cases.pydash_app/pytests/test_pyplotgen_export.pydash_app/tune_tab/runtime.pyjenkins_tests/clubb_plots/Jenkinsfiletests/test_fire_tuner.pyjenkins_tests/clubb_generalized_grid/Jenkinsfilejenkins_tests/clubb_column_mirror/Jenkinsfiletuner/tune_clubb.pydash_app/compile_tab/runtime.pytests/run_thread_test.pyjenkins_tests/clubb_jax/Jenkinsfiletests/check_mirrored_multi_col_output.pyjenkins_tests/clubb_single_prec_build/Jenkinsfiletests/run_G_unit_tests.pyrun_scripts/convergence_run/convergence_config.pypostprocessing/pyplotgen/README.mdpostprocessing/pyplotgen/pyplotgen.pytests/run_python_vs_fortran_cases.pyclubb_jax/tests/test_jax_cli_options.pyclubb_jax/tests/test_runtime_info.pyjenkins_tests/clubb_driver/Jenkinsfiledash_app/compile_tab/build_selector.pyinput/flag_sets/README.mdclubb_jax/README.mdrun_scripts/run_tuner_job.pytests/run_restart_test.pytuner/presets.pytests/run_loss_output_consistency.pydash_app/pytests/test_profile_tab.pytuner/job_runtime.pytests/pytests/test_jax_compare_forwarding.pyutilities/parse_argument_list/replace_err_code_type.pyutilities/print_tunable_parameters_table.pytuner/system_defaults.pyclubb_jax/run_jax.pytests/run_jax_comparison_mutation_test.pytests/run_bindiff_w_flags.pyjenkins_tests/clubb_gpu_async_output_matching/Jenkinsfileutilities/benchmark_converter.pyjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfileutilities/api_analysis/run_full_api_diagnostics.bashutilities/split_stats_to_legacy.pyutilities/CLUBBStandardsCheck.pyjenkins_tests/clubb_basic_full_run/Jenkinsfilerun_scripts/run_scm_all.pyrun_scripts/run_clubb_and_pyplotgen.pydash_app/profile_tab/runtime.pyjenkins_tests/clubb_gpu_vs_cpu_diffness/Jenkinsfiletests/run_stats_output_consistency.pydash_app/pytests/test_compile_tab_build_status.pycompile.pyclubb_jax/tests/test_kk_rico_oracle.pyclubb_jax/runtime_info.pyutilities/api_analysis/create_module_table.pyutilities/api_analysis/api_commitment_test.pyutilities/setup_python_venv.pydash_app/run_tab/runtime.pyutilities/convert_to_async.pyLLM_prompts/update_python_api_and_drivers.mdtests/pytests/test_column_mirror.pytests/run_silhs_test.pydash_app/plot_tab/pyplotgen_runtime.pyjenkins_tests/clubb_G_unit/Jenkinsfiletests/analyze_tuner_sample_history.pyrun_scripts/run_scm.pytests/pytests/test_run_clubb_conv_test.pyrun_scripts/run_bindiff_all.pypostprocessing/pyplotgen/config/Style_definitions.pyutilities/create_multi_col_params.pytuner/README.mdpostprocessing/pyplotgen/src/CaseGallerySetup.py1d1abb1d2fcf29eef75bfe3182b8b213a1c6001e1791075166000https://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comStandardize script arguments (#1373)
This is mainly changing the names of arguments to be clearer and more consistent, and replacing the usage of double dash options with single ones (I just like it better that way).
* Standardize script arguments and worker defaults
* Forward model options through the Python comparison harness
* Reuse existing modules for script argument helpers
* Fix script argument cleanup integration regressions
* Update API commitment wrapper for renamed exclusion option
2026-10-03 19:52:46 -05001d1abb1d2fcf29eef75bfe3182b8b213a1c6001eStandardize script arguments (#1373)editclubb_jax/tests/test_kk_rico_oracle.pyeditclubb_jax/tests/test_runtime_info.pyedittests/run_python_vs_fortran_cases.pyeditdash_app/compile_tab/runtime.pyeditrun_scripts/convergence_run/convergence_config.pyedittuner/job_runtime.pyedittests/pytests/test_run_clubb_conv_test.pyeditrun_scripts/run_clubb_w_varying_flags.pyedittests/run_G_unit_tests.pyeditrun_scripts/run_tuner.pyeditclubb_jax/tests/test_jax_cli_options.pyeditdash_app/plot_tab/pyplotgen_runtime.pyeditutilities/api_analysis/create_module_table.pyeditinput/flag_sets/README.mdedittests/check_budget_balance.pyeditexperimental/experimental_pdfs/python/dash_additions/utilities/refresh_pdf9_parcel_ensemble_lab.pyeditjenkins_tests/clubb_single_prec_build/Jenkinsfileeditdash_app/run_tab/runtime.pyeditrun_scripts/run_scm_loss.pyedittests/run_restart_test.pyeditutilities/parse_argument_list/replace_err_code_type.pyedittuner/README.mdeditjenkins_tests/clubb_jax/Jenkinsfileedittests/run_loss_output_consistency.pyeditdash_app/profile_tab/runtime.pyedittests/test_fire_tuner.pyedittests/check_mirrored_multi_col_output.pyeditjenkins_tests/clubb_driver/Jenkinsfileeditjenkins_tests/clubb_gpu_vs_cpu_diffness/Jenkinsfileeditjenkins_tests/clubb_tuner/Jenkinsfileeditpostprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.sheditutilities/split_stats_to_legacy.pyedittests/test_monoflux_limiter_GPU.pyedittests/pytests/test_bindiff_report.pyeditutilities/create_case_namelist.pyeditutilities/print_tunable_parameters_table.pyeditrun_scripts/run_bindiff_all.pyeditutilities/benchmark_converter.pyeditjenkins_tests/clubb_python/Jenkinsfileedittuner/system_defaults.pyeditutilities/convert_to_async.pyeditpostprocessing/pyplotgen/pyplotgen.pyeditdash_app/pytests/test_compile_tab_build_status.pyeditutilities/time_clubb.pyeditutilities/setup_python_venv.pyeditdash_app/pytests/test_profile_tab.pyedittests/pytests/test_column_mirror.pyeditrun_scripts/README.mdeditclubb_jax/run_jax.pyeditrun_scripts/run_scm_all.pyedittests/run_jax_vs_fortran_cases.pyeditrun_scripts/run_clubb_and_pyplotgen.pyedittests/README.mdedittests/run_jax_comparison_mutation_test.pyedittests/run_bindiff_w_flags.pyeditutilities/CLUBBStandardsCheck.pyedittuner/presets.pyeditpostprocessing/pyplotgen/src/CaseGallerySetup.pyeditjenkins_tests/clubb_generalized_grid/Jenkinsfileedittests/run_thread_test.pyeditutilities/pytests/test_time_clubb.pyeditjenkins_tests/clubb_G_unit/Jenkinsfileeditdash_app/pytests/test_pyplotgen_export.pyeditdash_app/compile_tab/build_selector.pyeditLLM_prompts/update_python_api_and_drivers.mdeditutilities/api_analysis/run_full_api_diagnostics.basheditcompile.pyeditrun_scripts/run_scm.pyedittuner/tune_clubb.pyeditdash_app/tune_tab/runtime.pyaddutilities/pytests/test_run_script_arguments.pyeditclubb_jax/runtime_info.pyeditpostprocessing/pyplotgen/config/Style_definitions.pyeditjenkins_tests/clubb_column_mirror/Jenkinsfileeditjenkins_tests/clubb_gpu_async_output_matching/Jenkinsfileeditutilities/api_analysis/api_commitment_test.pyedittests/run_silhs_test.pyeditjenkins_tests/clubb_plots/Jenkinsfileeditpostprocessing/pyplotgen/README.mdeditjenkins_tests/clubb_basic_full_run/Jenkinsfileedittests/run_clubb_conv_test.pyeditclubb_jax/README.mdeditjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfileeditrun_scripts/run_tuner_job.pyeditutilities/create_multi_col_params.pyedittests/run_stats_output_consistency.pyedittests/pytests/test_jax_compare_forwarding.pyeditCMakeLists.txtedittests/analyze_tuner_sample_history.py
- clubb_jax/AGENTS.mdLLM_prompts/script_cli_conventions.mdLLM_prompts/update_python_api_and_drivers.mdLLM_prompts/jenkins_workflow.mdLLM_prompts/dash_app_workflow.mdLLM_prompts/port_underlying_fortran_to_other_languages.md.agents/skills/clubb-jax-port/SKILL.mdLLM_prompts/numerical_regression_workflow.mdLLM_prompts/README.mdAGENTS.md.agents/skills/clubb-script-cli/SKILL.mdLLM_prompts/SHORTCUTS.mdLLM_prompts/fortran_column_refactor.mdLLM_prompts/update_host_models_after_clubb_changes.mdLLM_prompts/jax_porting_workflow.mdd1c3f80378f8621f388662593c7e5a47f1847b351791138711000https://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comImprove agent workflow discovery and completion evidence (#1375)
This is just a rework of out LLM shortcuts. I had chatgpt go through a bunch of sessions and investigate my inefficiencies in my workflow (like how often I have to ask for corrections for things that were already instructions in these shortcuts), and had it rework our shortcuts.
The things done seem to make sense - they're a little shorter and more concise, broken up a bit better, include some extra things. Hard to say if any of it's effective though - hopefully I'll notice an improvement with things
2026-10-04 13:31:51 -0500d1c3f80378f8621f388662593c7e5a47f1847b35Improve agent workflow discovery and completion evidence (#1375)editLLM_prompts/update_python_api_and_drivers.mdeditAGENTS.mdadd.agents/skills/clubb-jax-port/SKILL.mdeditLLM_prompts/dash_app_workflow.mdaddLLM_prompts/numerical_regression_workflow.mdaddLLM_prompts/jenkins_workflow.mdeditLLM_prompts/update_host_models_after_clubb_changes.mdeditLLM_prompts/SHORTCUTS.mdaddLLM_prompts/jax_porting_workflow.mdaddLLM_prompts/script_cli_conventions.mdeditLLM_prompts/port_underlying_fortran_to_other_languages.mdadd.agents/skills/clubb-script-cli/SKILL.mdaddclubb_jax/AGENTS.mdaddLLM_prompts/README.mdaddLLM_prompts/fortran_column_refactor.md
- clubb_jax/tests/test_silhs_fortran_oracle.pyclubb_jax/tests/test_silhs_sampling.pyclubb_jax/src/SILHS/latin_hypercube_driver_module.pyclubb_jax/src/SILHS/transform_to_pdf_module.py6601e309066dd39905ef96542673588ab63fae9f1791144058000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMatch Fortran SILHS sampling precision and overlap
Preserve default-real rounding in inverse-normal coefficients before
promotion to the sample dtype. Apply vertical overlap to starting-level
straight Monte Carlo samples and retain source sampling failure status.
Add a live Fortran inverse-normal oracle and regressions for overlap and
the source sample-count check. Keep comparison limits and tolerances.
2026-10-04 15:00:58 -05006601e309066dd39905ef96542673588ab63fae9fMatch Fortran SILHS sampling precision and overlapeditclubb_jax/src/SILHS/transform_to_pdf_module.pyeditclubb_jax/tests/test_silhs_sampling.pyeditclubb_jax/src/SILHS/latin_hypercube_driver_module.pyaddclubb_jax/tests/test_silhs_fortran_oracle.py
- clubb_jax/src/Microphys/lh_microphys_driver_module.pyclubb_jax/src/SILHS/est_kessler_microphys_module.pyclubb_jax/src/clubb_case_initalization.pyclubb_jax/tests/test_microphysics_host_errors.pyclubb_jax/SILHS_PORT_NOTES.mdclubb_jax/src/SILHS/silhs_importance_sample_module.pyclubb_jax/src/Microphys/microphys_init_cleanup.pyclubb_jax/src/advance_clubb_to_end.pyclubb_jax/tests/test_microphysics_integration.pyclubb_jax/tests/test_microphysics_port_structure.pyclubb_jax/src/Microphys/microphys_driver.pyclubb_jax/tests/test_silhs_diagnostics.py0b54478062f51857af1f30032392620a723a36a91791144129000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRestore SILHS diagnostics and microphysics host error guards
Carry weight-limiter and Kessler diagnostic failures through compiled
returns and ErrInfo. Preserve Fortran debug guards at the host boundaries
so negative-debug tracing can retain per-column failure status.
Write ordered microphysics/SILHS settings and approximate correlations
from initialization into the standalone setup file. Keep report lifetime
and output-name resolution outside the timestep driver.
Add focused failure/report regressions and update the port notes with
repeating-input comparisons and the native Morrison compiler sensitivity.
2026-10-04 15:02:09 -05000b54478062f51857af1f30032392620a723a36a9Restore SILHS diagnostics and microphysics host error guardseditclubb_jax/SILHS_PORT_NOTES.mdeditclubb_jax/src/SILHS/silhs_importance_sample_module.pyeditclubb_jax/src/advance_clubb_to_end.pyaddclubb_jax/tests/test_microphysics_host_errors.pyeditclubb_jax/src/Microphys/lh_microphys_driver_module.pyeditclubb_jax/src/Microphys/microphys_init_cleanup.pyeditclubb_jax/tests/test_microphysics_integration.pyeditclubb_jax/src/Microphys/microphys_driver.pyeditclubb_jax/src/SILHS/est_kessler_microphys_module.pyeditclubb_jax/tests/test_microphysics_port_structure.pyaddclubb_jax/tests/test_silhs_diagnostics.pyeditclubb_jax/src/clubb_case_initalization.py
- clubb_jax/src/SILHS/generate_uniform_sample_module.pysrc/SILHS/latin_hypercube_driver_module.F90clubb_jax/src/SILHS/latin_hypercube_driver_module.pysrc/SILHS/generate_uniform_sample_module.F902bc3e42f084e88d1684ee607e82de294c09466301791146565000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduDocument deterministic SILHS comparison patterns
Explain the ordered permutation, repeating within-stratum offsets and overlap
pool at every Fortran deterministic randomness override. Mirror the explanation
in JAX, including index phases, sequence reuse and independence from RNG state.
Executable statements are unchanged in both implementations; source/AST checks
confirm these changes only add comments.
2026-10-04 15:42:45 -05002bc3e42f084e88d1684ee607e82de294c0946630Document deterministic SILHS comparison patternseditclubb_jax/src/SILHS/latin_hypercube_driver_module.pyeditsrc/SILHS/generate_uniform_sample_module.F90editclubb_jax/src/SILHS/generate_uniform_sample_module.pyeditsrc/SILHS/latin_hypercube_driver_module.F90
- clubb_jax/tests/test_microphysics_error_paths.pyclubb_jax/tests/test_microphysics_host_errors.pyclubb_jax/src/Microphys/advance_microphys_module.pyclubb_jax/src/advance_clubb_to_end.pyclubb_jax/tests/test_microphysics_integration.pyclubb_jax/tests/test_microphysics_port_structure.pyclubb_jax/src/Microphys/microphys_driver.pyclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.pyf68c3b418216afa66a632f65916bf3eb50bab9231791146935000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUse definition decorators for microphysics JIT boundaries
Move the existing PDF preparation, scheme tendency and hydrometeor transport
JIT boundaries onto their routine definitions with @partial(jax.jit, ...).
Keep the static arguments unchanged and call the source-named routines directly
from the standalone driver.
Update host injection and source-order checks for the canonical routine names.
Lightweight error/feedback fixtures still check eager and compiled routine
bodies; real standalone runs exercise the decorated entry points.
Validation: 140 focused tests; 28 passed, 2435 warnings in 453.39s (0:07:33); unchanged RICO360/LBAKK275
strict comparisons; supported whole-driver and reverse-mode tracing.
2026-10-04 15:48:55 -0500f68c3b418216afa66a632f65916bf3eb50bab923Use definition decorators for microphysics JIT boundarieseditclubb_jax/tests/test_microphysics_error_paths.pyeditclubb_jax/src/Microphys/advance_microphys_module.pyeditclubb_jax/src/Microphys/microphys_driver.pyeditclubb_jax/tests/test_microphysics_integration.pyeditclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.pyeditclubb_jax/tests/test_microphysics_host_errors.pyeditclubb_jax/src/advance_clubb_to_end.pyeditclubb_jax/tests/test_microphysics_port_structure.py
- clubb_jax/src/SILHS/parameters_silhs.pysrc/SILHS/parameters_silhs.F90src/SILHS/generate_uniform_sample_module.F90clubb_jax/src/Microphys/microphys_init_cleanup.pysrc/Microphys/microphys_init_cleanup.F90clubb_jax/src/SILHS/generate_uniform_sample_module.pysrc/SILHS/latin_hypercube_driver_module.F90clubb_jax/src/SILHS/latin_hypercube_driver_module.py7863790cbc24084037631ff45931d6b4854e24161791147882000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSimplify deterministic SILHS sampling comments
Describe the repeatable-testing branches directly, with their base values and
index offsets. Show the first twelve pool entries for four columns, grouped by
sample, and use the same concise descriptions in the Fortran and JAX mirrors.
Only comments and argument documentation change; executable code is unchanged.
2026-10-04 16:04:42 -05007863790cbc24084037631ff45931d6b4854e2416Simplify deterministic SILHS sampling commentseditsrc/Microphys/microphys_init_cleanup.F90editsrc/SILHS/parameters_silhs.F90editsrc/SILHS/generate_uniform_sample_module.F90editclubb_jax/src/Microphys/microphys_init_cleanup.pyeditclubb_jax/src/SILHS/latin_hypercube_driver_module.pyeditclubb_jax/src/SILHS/generate_uniform_sample_module.pyeditsrc/SILHS/latin_hypercube_driver_module.F90editclubb_jax/src/SILHS/parameters_silhs.py
- LLM_prompts/update_host_models_after_clubb_changes.mdLLM_prompts/SHORTCUTS.mda85670328def581a6e9b49f4618b1c76acf63fb51791154568000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduExclude E3SM from host compatibility updates
Keep the exclusion visible in shortcut discovery and the host workflow.
Treat sys_admin mappings as synchronization metadata, not the active host list.
2026-10-04 17:56:08 -0500a85670328def581a6e9b49f4618b1c76acf63fb5Exclude E3SM from host compatibility updateseditLLM_prompts/update_host_models_after_clubb_changes.mdeditLLM_prompts/SHORTCUTS.md
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Hueblerhuebler@uwm.eduRemove archive metadata from Jenkins scripts
2026-10-02 16:51:39 -050088f030077490c706dcbbeac4e9b662ad39834c63Remove archive metadata from Jenkins 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Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
legacy method selector. Keep the sampled states and comparison tolerance.
This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
git- clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py9773149413191463435fa778c5c2c5abe2296bb71792568551000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate restored legacy mixing-length reference calls
Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
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This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
- clubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py5c831d1c5350e111a1cd16fdfbb6a8999bc1fdb81792568751000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAlign API multiplier tests with positive bounds
Use a valid positive launch multiplier in the reach comparison and expect the strictly positive hard bound. Startup validation retains explicit rejection coverage for zero. Both affected API tests pass; rerun the Python Jenkins job on this checkpoint.
2026-10-21 02:45:51 -05005c831d1c5350e111a1cd16fdfbb6a8999bc1fdb8Align API multiplier tests with positive boundseditclubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyeditclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py
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Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
legacy method selector. Keep the sampled states and comparison tolerance.
This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
git- clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py9773149413191463435fa778c5c2c5abe2296bb71792568551000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate restored legacy mixing-length reference calls
Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
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This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
- clubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py5c831d1c5350e111a1cd16fdfbb6a8999bc1fdb81792568751000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAlign API multiplier tests with positive bounds
Use a valid positive launch multiplier in the reach comparison and expect the strictly positive hard bound. Startup validation retains explicit rejection coverage for zero. Both affected API tests pass; rerun the Python Jenkins job on this checkpoint.
2026-10-21 02:45:51 -05005c831d1c5350e111a1cd16fdfbb6a8999bc1fdb8Align API multiplier tests with positive boundseditclubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyeditclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py
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Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
legacy method selector. Keep the sampled states and comparison tolerance.
This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
git- clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py9773149413191463435fa778c5c2c5abe2296bb71792568551000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate restored legacy mixing-length reference calls
Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
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This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
- clubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py5c831d1c5350e111a1cd16fdfbb6a8999bc1fdb81792568751000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAlign API multiplier tests with positive bounds
Use a valid positive launch multiplier in the reach comparison and expect the strictly positive hard bound. Startup validation retains explicit rejection coverage for zero. Both affected API tests pass; rerun the Python Jenkins job on this checkpoint.
2026-10-21 02:45:51 -05005c831d1c5350e111a1cd16fdfbb6a8999bc1fdb8Align API multiplier tests with positive boundseditclubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyeditclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py
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#3939false3911267FAILURE1792568622378https://carson.math.uwm.edu/jenkins/job/clubb_branch_jax/39/- clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py9773149413191463435fa778c5c2c5abe2296bb71792568551000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate restored legacy mixing-length reference calls
Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
legacy method selector. Keep the sampled states and comparison tolerance.
This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
git- clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py9773149413191463435fa778c5c2c5abe2296bb71792568551000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdate restored legacy mixing-length reference calls
Master restored a reference test using the removed imu/newmu interface.
Use the current parameter index, initialized parameter count and explicit
legacy method selector. Keep the sampled states and comparison tolerance.
This is a validation checkpoint for the Jenkins rerun; no physics changes.
2026-10-21 02:42:31 -05009773149413191463435fa778c5c2c5abe2296bb7Update restored legacy mixing-length reference callseditclubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py
- clubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py5c831d1c5350e111a1cd16fdfbb6a8999bc1fdb81792568751000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAlign API multiplier tests with positive bounds
Use a valid positive launch multiplier in the reach comparison and expect the strictly positive hard bound. Startup validation retains explicit rejection coverage for zero. Both affected API tests pass; rerun the Python Jenkins job on this checkpoint.
2026-10-21 02:45:51 -05005c831d1c5350e111a1cd16fdfbb6a8999bc1fdb8Align API multiplier tests with positive boundseditclubb_python_api/pytests/auto_llm_generated_pytests/test_init_sequence.pyeditclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_mixing_length.py
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