Started by user Gunther Huebler Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/clubb_jax_tests_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/clubb_jax_tests/Jenkinsfile The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_jax_tests_branch@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/jax_microphys^{commit} # timeout=10 Checking out Revision 3c9b3d56e24d3a766f45e84903e76ee980eb5aa5 (refs/remotes/origin/jax_microphys) > git config core.sparsecheckout # timeout=10 > git checkout -f 3c9b3d56e24d3a766f45e84903e76ee980eb5aa5 # timeout=10 Commit message: "Adding a test, run_jax_comparison_mutation_test.py, that injects little code errors into the jax and runs the jax_vs_fortran script to ensure it fails." > git rev-list --no-walk 611601a13dfd637b282f2b07c1a142da00036a8f # timeout=10 [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_jax_tests_branch [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_jax_tests_branch # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/jax_microphys^{commit} # timeout=10 Checking out Revision 3c9b3d56e24d3a766f45e84903e76ee980eb5aa5 (refs/remotes/origin/jax_microphys) > git config core.sparsecheckout # timeout=10 > git checkout -f 3c9b3d56e24d3a766f45e84903e76ee980eb5aa5 # timeout=10 Commit message: "Adding a test, run_jax_comparison_mutation_test.py, that injects little code errors into the jax and runs the jax_vs_fortran script to ensure it fails." [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -debug -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_jax_tests_branch/build/gcc_DEBUG_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_jax_tests_branch/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_jax_tests_branch/build/gcc_DEBUG_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble about to cmnake /home/jenkins/workspace/clubb_jax_tests_branch/build/gcc_DEBUG_PRECdouble Running CMake configure... 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Generating Fortran dyndep file src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/Fortran.dd [613/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_precision.F90.o [614/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameter_indices.F90.o [615/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/array_index.F90.o [616/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/error_code.F90.o [617/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/model_flags.F90.o [618/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/constants_clubb.F90.o [619/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/endian.F90.o [620/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_interfaces.F90.o [621/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calendar.F90.o [622/923] Building Fortran 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Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diagnose_correlations_module.F90.o [633/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mean_adv.F90.o [634/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_roots.F90.o [635/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_operations.F90.o [636/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/code_timer_module.F90.o [637/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_tsdadg_pdf.F90.o [638/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_lu_solver.F90.o [639/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90.o [640/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_bicgstab_solver.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/CLUBB_core/penta_bicgstab_solver.F90:140:10: 140 | if ( norm_rhs == 0.0) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [641/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/corr_varnce_module.F90.o [642/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/index_mapping.F90.o [643/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_class.F90.o [644/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_solver_wrapper.F90.o [645/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/adg1_adg2_3d_luhar_pdf.F90.o [646/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sigma_sqd_w_module.F90.o [647/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sponge_layer_damping.F90.o [648/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/saturation.F90.o [649/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/calc_pressure.F90.o [650/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pos_definite_module.F90.o [651/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/turbulent_adv_pdf.F90.o [652/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o [653/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/new_pdf.F90.o [654/923] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/CLUBB_core/remapping_module.F90:1212:43: 1212 | if(f(i,k+1)*f(i,k-1) 8) in loop beginning at (2) [-Wdo-subscript] [784/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o [785/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o [786/923] Linking Fortran static library src/SILHS/libsilhs_lib.a [787/923] Generating Fortran dyndep file src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/Fortran.dd [788/923] Generating Fortran dyndep file src/Radiation/CMakeFiles/radiation_lib.dir/Fortran.dd [789/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o [790/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o [791/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o [792/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o [793/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o [794/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o [795/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o [796/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [797/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [798/923] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [799/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [800/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o [801/923] Linking Fortran static library src/Microphys/Morrison_microphys/libmorrison_microphys_lib.a [802/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [803/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o [804/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o [805/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [806/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/Numerical_recipes/ran_state.f90:8:59: 8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1 | 1 Warning: Integer outside symmetric range implied by Standard Fortran at (1) [807/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [808/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [809/923] Linking Fortran static library src/Numerical_recipes/libnumerical_recipes_lib.a [810/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [811/923] Linking Fortran static library src/Radiation/libradiation_lib.a [812/923] Generating Fortran dyndep file src/Input_fields/CMakeFiles/input_fields_lib.dir/Fortran.dd [813/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o [814/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [815/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o [816/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [817/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o [818/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [819/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o [820/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [821/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o [822/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1038:15: 1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1040:15: 1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1042:15: 1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1045:15: 1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1047:15: 1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1049:15: 1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:356:13: 356 | if( ANY(Ts_in == 0.0) ) then | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:620:12: 620 | if(T_in(i,nlev+1)/=missing_value) then | 1 Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:636:12: 636 | if(T_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:638:12: 638 | if(q_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:640:12: 640 | if(u_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:642:12: 642 | if(v_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:647:15: 647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:651:15: 651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:658:12: 658 | if(ug_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:660:12: 660 | if(vg_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1252:42: 1252 | character dim_name*( NF90_MAX_NAME ) | 1 Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:33: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:43: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1254:46: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1237:60: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1237:54: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1238:23: 1238 | var, use_NF90_REAL, status, required) | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:1167:67: 1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, & | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:751:51: 751 | get_add_surface_data, ntime, & | 1 Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:750:81: 750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, & | 1 Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:290:32: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:290:38: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_core/readiopdata_core_module.F90:291:19: 291 | integer :: varID, NCID | 1 Warning: Unused variable 'varid' declared at (1) [-Wunused-variable] [823/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_module.F90:260:16: 260 | integer :: k | 1 Warning: Unused variable 'k' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_module.F90:264:17: 264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s] | 1 Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_jax_tests_branch/src/readiopdata_module.F90:243:31: 243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing ) | 1 Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument] [824/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:57:8: 57 | use input_names, only: & | 1 Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:165:13: 165 | p_in_Pa, & ! Pressure [Pa] | 1 Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:160:8: 160 | rt, & ! Total water mixing ratio sounding [kg/kg] | 1 Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:166:10: 166 | subs ! Vertical velocity sounding [m/s or Pa/s] | 1 Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:159:11: 159 | theta, & ! Liquid potential temperature sounding [K] | 1 Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:161:7: 161 | u, & ! u wind sounding [m/s] | 1 Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:163:8: 163 | ug, & ! u geostrophic wind sounding [m/s] | 1 Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:162:7: 162 | v, & ! v wind sounding [m/s] | 1 Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:164:8: 164 | vg, & ! v geostrophic wind sounding [m/s] | 1 Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_jax_tests_branch/src/Input_fields/sounding.F90:158:7: 158 | z, & ! Altitude [m] | 1 Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [825/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o [826/923] Linking Fortran static library src/Input_fields/libinput_fields_lib.a [827/923] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd [828/923] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd [829/923] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd [830/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [831/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [832/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [833/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o [834/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [835/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o [836/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [837/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o [838/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [839/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o [840/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [841/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o [842/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [843/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o [844/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o [845/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/G_unit_test_types/fill_holes_tests.F90:407:27: 407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/G_unit_test_types/fill_holes_tests.F90:406:22: 406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/G_unit_test_types/fill_holes_tests.F90:462:22: 462 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/G_unit_test_types/fill_holes_tests.F90:221:27: 221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/G_unit_test_types/fill_holes_tests.F90:220:22: 220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/G_unit_test_types/fill_holes_tests.F90:275:22: 275 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [846/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [847/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [848/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [849/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [850/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [851/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [852/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/Microphys/ice_dfsn_module.F90:282:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_jax_tests_branch/src/Microphys/ice_dfsn_module.F90:296:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [853/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o [854/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [855/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o [856/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [857/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o [858/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o [859/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o [860/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o [861/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o [862/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [863/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o [864/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o [865/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o [866/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [867/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o [868/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [869/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o [870/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [871/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o [872/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o [873/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o [874/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [875/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [876/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/Benchmark_cases/bomex.F90:22:48: 22 | gr, rtm, l_readiopdata, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [877/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [878/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o [879/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o [880/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o [881/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [882/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [883/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o [884/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o [885/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o [886/923] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a [887/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o [888/923] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a [889/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o [890/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o [891/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [892/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [893/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [894/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [895/923] Linking Fortran static library src/Microphys/libmicrophys_lib.a [896/923] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd [897/923] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd [898/923] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [899/923] Linking Fortran executable src/G_unit_tests [900/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [901/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_driver.F90:5539:76: 5539 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [902/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver.F90:255:28: 255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) ) | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [903/923] Linking Fortran static library src/libclubb_driver_lib.a [904/923] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd [905/923] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd [906/923] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd [907/923] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd [908/923] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone_loss.dir/Fortran.dd [909/923] Generating Fortran dyndep file src/CMakeFiles/clubb_loss_driver_test.dir/Fortran.dd [910/923] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [911/923] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [912/923] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [913/923] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o [914/923] Linking Fortran executable src/clubb_thread_test [915/923] Linking Fortran executable src/clubb_driver_test [916/923] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [917/923] Linking Fortran executable src/clubb_standalone [918/923] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:273:14: 273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:278:14: 278 | if ( any( test_correlation /= reference_correlation ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:283:14: 283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:288:14: 288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:293:14: 293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:512:14: 512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:521:14: 521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:520:14: 520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:519:14: 519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:518:14: 518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:517:14: 517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:431:14: 431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:371:14: 371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:370:14: 370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:369:14: 369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:368:14: 368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_jax_tests_branch/src/clubb_loss_driver_test.F90:367:14: 367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [919/923] Linking Fortran executable src/clubb_standalone_loss [920/923] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [921/923] Linking Fortran executable src/clubb_loss_driver_test [922/923] Linking Fortran executable src/clubb_tuner [922/923] Install the project... -- Install configuration: "Debug" -- Installing: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_tuner -- Set runtime path of "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/G_unit_tests -- Set runtime path of "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_thread_test -- Set runtime path of "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone -- Set runtime path of "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss -- Set runtime path of "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_jax_tests_branch/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types Build completed successfully, and all source code checks passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Expected failure test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + python3 tests/run_jax_comparison_mutation_test.py ==> No compatible Python found for cpu; uv will download Python 3.12 ==> Installing uv 0.11.32 in /home/jenkins/workspace/clubb_jax_tests_branch/.clubb-jax-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_jax_tests_branch/.clubb-jax-tools/bin uv uvx everything's installed! ==> uv is ready: uv 0.11.32 (x86_64-unknown-linux-gnu) Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB) Downloaded cpython-3.12.13-linux-x86_64-gnu (download) Using CPython 3.12.13 Creating virtual environment at: .venv-jax Activate with: source .venv-jax/bin/activate ==> Installing JAX 0.11.0 (cpu) and requirements from /home/jenkins/workspace/clubb_jax_tests_branch/clubb_jax/requirements.txt Using Python 3.12.13 environment at: .venv-jax Resolved 15 packages in 315ms Downloading pygments (1.2MiB) Downloading jax (3.1MiB) Downloading scipy (33.7MiB) Downloading numpy (15.9MiB) Downloading cftime (1.6MiB) Downloading netcdf4 (9.7MiB) Downloading jaxlib (83.2MiB) Downloaded cftime Downloaded pygments Downloaded netcdf4 Downloaded jax Downloaded numpy Downloaded scipy Downloaded jaxlib Prepared 15 packages in 3.86s Installed 15 packages in 41ms + certifi==2026.7.22 + cftime==1.6.6 + iniconfig==2.3.0 + jax==0.11.0 + jaxlib==0.11.0 + ml-dtypes==0.6.0 + netcdf4==1.7.4 + numpy==2.5.3 + opt-einsum==3.4.0 + packaging==26.3 + pluggy==1.6.0 + pygments==2.21.0 + pytest==9.1.1 + scipy==1.18.1 + tabulate==0.10.0 CLUBB JAX runtime: Environment: /home/jenkins/workspace/clubb_jax_tests_branch/.venv-jax (Python 3.12) Accelerator: cpu JAX: 0.11.0 (jaxlib 0.11.0) Device: cpu:0 Mutation test artifacts: /home/jenkins/workspace/clubb_jax_tests_branch/output/tests/jax_comparison_mutation_lo7d22nx Control: running unmodified BOMEX comparison... /home/jenkins/workspace/clubb_jax_tests_branch/tests/run_jax_comparison_mutation_test.py:211: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5. As an alternative, you can create a new view using np.reshape (with copy=False if needed). names = [name.strip() for name in netCDF4.chartostring(dataset["param_name"][:])] Control passed. Mutation heating: running comparison... PASS heating: thlm mean absolute difference 0.00015; failing columns [1, 2, 3, 4]. Mutation parameter_handling: running comparison... PASS parameter_handling: wp3 mean absolute difference 9.25992e-07; failing columns [2, 3, 4]. Mutation first_column: running comparison... PASS first_column: wp3 mean absolute difference 4.69019e-07; failing columns [2, 3, 4]. PASS: control matched; all 3 mutations caused numerical comparison failures with both models completing successfully. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Jax vs Fortran: standard stats) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + ./tests/run_jax_vs_fortran_cases.py -stats input/stats/standard_stats.in -j 4 CLUBB JAX runtime: Environment: /home/jenkins/workspace/clubb_jax_tests_branch/.venv-jax (Python 3.12) Accelerator: cpu JAX: 0.11.0 (jaxlib 0.11.0) Device: cpu:0 Run settings: Output: /home/jenkins/workspace/clubb_jax_tests_branch/output/tests/jax_driver_test_results Statistics: input/stats/standard_stats.in Debug: case default Forwarded to both runs: -stats input/stats/standard_stats.in Columns: 4 Workers: 4 Comparison limits: absolute 1e-07; percentage 1e-07% Cases and flag sets: 20 cases x 1 flag set = 20 JAX/Fortran pairs Flag sets: default Cases: arm (360 iterations) atex (360 iterations) bomex (native duration) cobra (360 iterations) dycoms2_rf01 (native duration) dycoms2_rf01_fixed_sst (300 iterations) dycoms2_rf02_nd (native duration) fire (native duration) gabls2 (360 iterations) gabls3_night (360 iterations) jun25_altocu (180 iterations) neutral (native duration) wangara (native duration) dycoms2_rf02_do (native duration) dycoms2_rf02_ds (240 iterations) lba_kk (360 iterations) - input case: lba - microphysics_setting.microphys_scheme = "khairoutdinov_kogan" - microphysics_setting.lh_microphys_type = "disabled" - microphysics_setting.l_ice_microphys = .false. - microphysics_setting.l_graupel = .false. rico (380 iterations) - dt_main: 60 s lba (93 iterations) - percentage limit: 0.001% - microphysics_setting.lh_microphys_type = "disabled" clex9_oct14 (73 iterations) - percentage limit: 0.001% nov11_altocu (62 iterations) - percentage limit: 0.001% [Status ] Flag set Case Timesteps JAX (s) Fortran (s) Total (s) ----------------------------------------------------------------------------------------------------------------- [match ] default bomex 360 / 360 238.0 7.3 253.0 [match ] default arm 360 / 360 240.4 8.9 257.1 [match ] default cobra 360 / 360 251.2 8.7 267.1 [match ] default atex 360 / 360 245.0 12.4 267.3 [match ] default fire 180 / 180 147.8 3.8 156.0 [match ] default dycoms2_rf01_fixed_sst 300 / 300 198.5 3.3 206.2 [match ] default dycoms2_rf01 240 / 240 209.0 20.3 245.3 [match ] default dycoms2_rf02_nd 360 / 360 245.6 5.3 260.8 [match ] default gabls3_night 360 / 360 92.4 4.8 99.9 [match ] default gabls2 360 / 360 132.5 19.7 156.0 [match ] default jun25_altocu 180 / 180 162.6 8.0 177.6 [match ] default neutral 360 / 360 252.6 8.2 268.2 [match ] default wangara 480 / 480 306.9 8.0 324.3 [match ] default dycoms2_rf02_ds 240 / 240 441.8 24.4 474.7 [match ] default rico 380 / 380 320.2 10.9 335.0 [match ] default dycoms2_rf02_do 360 / 360 598.5 36.5 646.4 [match ] default lba_kk 360 / 360 554.0 18.7 582.9 [match ] default nov11_altocu 62 / 62 174.3 4.1 183.1 [match ] default clex9_oct14 73 / 73 185.3 4.7 194.8 [match ] default lba 93 / 93 259.9 5.0 269.9 Flag set default: Match Diff Failed ----- ---- ------ 20 0 0 Total time: 24m 41.8s Results JSON: /home/jenkins/workspace/clubb_jax_tests_branch/output/tests/jax_driver_test_results/case_compare_summary.json Bindiff log: /home/jenkins/workspace/clubb_jax_tests_branch/output/tests/jax_driver_test_results/final_bindiff.log [passed] [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Jax Python vs Fortran cases w varying flags) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + python3 tests/run_jax_vs_fortran_cases.py -debug 0 -stats input/stats/standard_stats.in -max_iters 5 -flag_config_file input/flag_sets/config_core_flags_wo_never_supported_jax_features.json CLUBB JAX runtime: Environment: /home/jenkins/workspace/clubb_jax_tests_branch/.venv-jax (Python 3.12) Accelerator: cpu JAX: 0.11.0 (jaxlib 0.11.0) Device: cpu:0 Run settings: Output: /home/jenkins/workspace/clubb_jax_tests_branch/output/tests/jax_driver_test_results Statistics: input/stats/standard_stats.in Debug: 0 Forwarded to both runs: -debug 0 -stats input/stats/standard_stats.in -max_iters 5 Columns: 4 Workers: 1 Comparison limits: absolute 1e-07; percentage 1e-07% Cases and flag sets: 20 cases x 18 flag sets = 360 JAX/Fortran pairs Flag sets: default config_core_flags_wo_never_supported_jax_features_flag2 - saturation_formula = 1 - l_godunov_upwind_xpyp_ta = .true. - l_lh_importance_sampling = .false. - l_random_k_lh_start = .true. - l_max_overlap_in_cloud = .false. config_core_flags_wo_never_supported_jax_features_flag3 - ipdf_call_placement = 1 - l_ho_trad_coriolis = .true. - l_ho_nontrad_coriolis = .true. config_core_flags_wo_never_supported_jax_features_flag4 - iiPDF_type = 7 config_core_flags_wo_never_supported_jax_features_flag5 - l_predict_upwp_vpwp = .false. config_core_flags_wo_never_supported_jax_features_flag6 - l_wp2_fill_holes_tke = .false. - l_enable_relaxed_clipping = .true. - l_min_xp2_from_corr_wx = .false. - l_add_dycore_grid = .true. - l_lh_straight_mc = .true. config_core_flags_wo_never_supported_jax_features_flag7 - l_diag_Lscale_from_tau = .true. - fill_holes_type = 3 config_core_flags_wo_never_supported_jax_features_flag8 - l_upwind_xpyp_ta = .false. - l_upwind_xm_ma = .false. - l_lh_clustered_sampling = .false. - l_lh_instant_var_covar_src = .false. - l_lh_limit_weights = .false. config_core_flags_wo_never_supported_jax_features_flag9 - l_min_wp2_from_corr_wx = .true. - l_stability_correct_tau_zm = .true. - l_damp_wp2_using_em = .false. - l_use_C7_Richardson = .false. config_core_flags_wo_never_supported_jax_features_flag10 - l_vert_avg_closure = .true. - l_use_cloud_cover = .true. - l_damp_wp3_Skw_squared = .false. - l_use_C11_Richardson = .true. - l_rcm_in_cloud_k_lh_start = .false. config_core_flags_wo_never_supported_jax_features_flag11 - l_rcm_supersat_adj = .false. - l_C2_cloud_frac = .true. - l_use_precip_frac = .false. - l_do_expldiff_rtm_thlm = .true. - l_use_shear_Richardson = .true. config_core_flags_wo_never_supported_jax_features_flag12 - l_prescribed_avg_deltaz = .true. - l_stability_correct_Kh_N2_zm = .true. - l_trapezoidal_rule_zt = .true. - l_trapezoidal_rule_zm = .true. - l_call_pdf_closure_twice = .true. config_core_flags_wo_never_supported_jax_features_flag13 - l_brunt_vaisala_freq_moist = .true. - l_use_thvm_in_bv_freq = .true. - l_lmm_stepping = .true. - l_vary_convect_depth = .true. config_core_flags_wo_never_supported_jax_features_flag14 - l_use_tke_in_wp3_pr_turb_term = .false. - l_use_tke_in_wp2_wp3_K_dfsn = .true. - l_use_wp3_lim_with_smth_Heaviside = .true. - l_smooth_Heaviside_tau_wpxp = .false. - l_modify_limiters_for_cnvg_test = .true. config_core_flags_wo_never_supported_jax_features_flag15 - l_mono_flux_lim_rtm = .false. - l_mono_flux_lim_um = .false. - l_mono_flux_lim_vm = .false. - l_mono_flux_lim_spikefix = .false. config_core_flags_wo_never_supported_jax_features_flag16 - l_standard_term_ta = .true. - l_partial_upwind_wp3 = .false. - l_lh_var_frac = .true. config_core_flags_wo_never_supported_jax_features_flag17 - l_standard_term_ta = .true. - l_partial_upwind_wp3 = .true. - l_lh_normalize_weights = .false. config_core_flags_wo_never_supported_jax_features_flag18 - ipdf_call_placement = 3 Cases: arm (5 iterations) atex (5 iterations) bomex (5 iterations) cobra (5 iterations) dycoms2_rf01 (5 iterations) dycoms2_rf01_fixed_sst (5 iterations) dycoms2_rf02_nd (5 iterations) fire (5 iterations) gabls2 (5 iterations) gabls3_night (5 iterations) jun25_altocu (5 iterations) neutral (5 iterations) wangara (5 iterations) dycoms2_rf02_do (5 iterations) dycoms2_rf02_ds (5 iterations) lba_kk (5 iterations) - input case: lba - microphysics_setting.microphys_scheme = "khairoutdinov_kogan" - microphysics_setting.lh_microphys_type = "disabled" - microphysics_setting.l_ice_microphys = .false. - microphysics_setting.l_graupel = .false. rico (5 iterations) - dt_main: 60 s lba (5 iterations) - percentage limit: 0.001% - microphysics_setting.lh_microphys_type = "disabled" clex9_oct14 (5 iterations) - percentage limit: 0.001% nov11_altocu (5 iterations) - percentage limit: 0.001% [Status ] Flag set Case Timesteps JAX (s) Fortran (s) Total (s) ------------------------------------------------------------------------------------------------------------------------------------------------- [match ] default arm 5 / 5 41.1 1.0 44.1 [match ] default atex 5 / 5 43.5 1.0 46.6 [match ] default bomex 5 / 5 43.9 0.9 46.9 [match ] default cobra 5 / 5 43.6 1.0 46.8 [match ] default dycoms2_rf01 5 / 5 41.8 1.2 45.2 [match ] default dycoms2_rf01_fixed_sst 5 / 5 41.2 0.9 44.2 [match ] default dycoms2_rf02_nd 5 / 5 43.1 0.9 46.1 Aborted by Gunther Huebler Sending interrupt signal to process Comparison interrupted; stopped all active case process groups. script returned exit code 143 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: 7451d30e-731c-4677-af39-ec20ceb30917 Finished: ABORTED