Console Output

+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ulimit -s 8388608
+ python3 tests/run_jax_comparison_mutation_test.py
CLUBB JAX runtime:
  Environment: /home/jenkins/workspace/clubb_branch_jax/.venv-jax (Python 3.12)
  Accelerator: cpu
  JAX: 0.11.0 (jaxlib 0.11.0)
  Device: cpu:0
Mutation test artifacts: /home/jenkins/workspace/clubb_branch_jax/output/tests/jax_comparison_mutation_g7va28vc
Control: running unmodified bomex comparison...
Control passed.
Mutation heating: running comparison...
PASS heating: thlm mean absolute difference 0.00015; failing columns [1, 2, 3, 4].
Mutation parameter_handling: running comparison...
PASS parameter_handling: wp3 mean absolute difference 9.25992e-07; failing columns [2, 3, 4].
Mutation first_column: running comparison...
PASS first_column: wp3 mean absolute difference 4.69019e-07; failing columns [2, 3, 4].
Mutation missing_stat: running comparison...
PASS missing_stat: wprtp absent only from JAX output; strict comparison rejected it.

==============================================================================
Expected failure test: PASS
==============================================================================
Case: bomex | 4 timesteps x 60 s | 4 columns | CPU/double
Statistics: input/stats/multi_col_stats.in
Tolerances: JAX-versus-Fortran harness defaults (absolute 1e-07; percentage 1e-07%)

[PASS] Unmodified control — JAX and Fortran matched.

[PASS] heating
  Add 1e-6 K/s of spurious heating to every column.
  Numerical difference detected; both models completed 4 timesteps.
  thlm: mean absolute difference 0.00015; mean percentage difference 4.91235e-05%
  Failing columns: 1, 2, 3, 4; first comparison failure: timestep 1.

[PASS] parameter_handling
  Load C8 as [0.2, 0.3, 0.4, 0.5] instead of [0.2, 0.4, 0.6, 0.8].
  Numerical difference detected; both models completed 4 timesteps.
  wp3: mean absolute difference 9.25992e-07; mean percentage difference 0.244887%
  Failing columns: 2, 3, 4; first comparison failure: timestep 1.

[PASS] first_column
  Use column 1's previous wp3 in every column's timestep equation.
  Numerical difference detected; both models completed 4 timesteps.
  wp3: mean absolute difference 4.69019e-07; mean percentage difference 0.118965%
  Failing columns: 2, 3, 4; first comparison failure: timestep 3.

[PASS] missing_stat
  Omit wprtp from JAX statistics output while keeping its calculation.
  wprtp is missing only from JAX output; both models completed 4 timesteps.
  Strict bindiff detected the missing variable; other stats were unchanged.

Result: PASS — 4/4 mutations verified | 77.1 s
Logs and outputs: /home/jenkins/workspace/clubb_branch_jax/output/tests/jax_comparison_mutation_g7va28vc
==============================================================================