Started by user Gunther Huebler Checking out git https://github.com/larson-group/clubb.git into /home/jenkins/workspace/clubb_branch_jax@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 to read jenkins_tests/clubb_jax/Jenkinsfile The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_branch_jax@script/05bf1b9ccde5d7fdda9b78893a3cf36477d0cb064cc71594a43c33c536a726b4 # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/pytest_cleanup^{commit} # timeout=10 Checking out Revision e320b09e81659767a0110c7d8c6b626854ec7a21 (refs/remotes/origin/pytest_cleanup) > git config core.sparsecheckout # timeout=10 > git checkout -f e320b09e81659767a0110c7d8c6b626854ec7a21 # timeout=10 Commit message: "Tidy moved pytest helper formatting" First time build. Skipping changelog. [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_branch_jax [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_branch_jax # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/pytest_cleanup^{commit} # timeout=10 Checking out Revision e320b09e81659767a0110c7d8c6b626854ec7a21 (refs/remotes/origin/pytest_cleanup) > git config core.sparsecheckout # timeout=10 > git checkout -f e320b09e81659767a0110c7d8c6b626854ec7a21 # timeout=10 Commit message: "Tidy moved pytest helper formatting" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -debug -- The Fortran compiler identification is GNU 13.1.0 -- The C compiler identification is GNU 13.1.0 -- The CXX compiler identification is GNU 13.1.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gfortran - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiling with double precision -- Performing Test NETCDF_ABI_COMPATIBLE -- Performing Test NETCDF_ABI_COMPATIBLE - Success -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_branch_jax/build/gcc_DEBUG_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_branch_jax/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_branch_jax/build/gcc_DEBUG_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble about to cmnake /home/jenkins/workspace/clubb_branch_jax/build/gcc_DEBUG_PRECdouble Running CMake configure... 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Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_swr.F.o [778/923] Linking Fortran static library src/Radiation/BUGSrad/libbugsrad_lib.a [779/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o [780/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/math_utilities.F90.o [781/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/generate_uniform_sample_module.F90.o [782/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/lh_microphys_var_covar_module.F90.o [783/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o /home/jenkins/workspace/clubb_branch_jax/src/SILHS/silhs_importance_sample_module.F90:642:62: 637 | do category=1, num_importance_categories | 2 ...... 642 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] [784/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o [785/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o [786/923] Linking Fortran static library src/SILHS/libsilhs_lib.a [787/923] Generating Fortran dyndep file src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/Fortran.dd [788/923] Generating Fortran dyndep file src/Radiation/CMakeFiles/radiation_lib.dir/Fortran.dd [789/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o [790/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrtype.f90.o [791/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/cos_solar_zen_module.F90.o [792/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/quicksort.F90.o [793/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o [794/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nr.f90.o [795/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/rad_lwsw_module.F90.o [796/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/extended_atmosphere_module.F90.o [797/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o [798/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/enhanced_simann.F90.o [799/923] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o [800/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_variables_module.F90.o [801/923] Linking Fortran static library src/Microphys/Morrison_microphys/libmorrison_microphys_lib.a [802/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/nrutil.f90.o [803/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amoeba.f90.o [804/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/amebsa.f90.o [805/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/bugsrad_driver.F90.o [806/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o /home/jenkins/workspace/clubb_branch_jax/src/Numerical_recipes/ran_state.f90:8:59: 8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1 | 1 Warning: Integer outside symmetric range implied by Standard Fortran at (1) [807/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o [808/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_v.f90.o [809/923] Linking Fortran static library src/Numerical_recipes/libnumerical_recipes_lib.a [810/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o [811/923] Linking Fortran static library src/Radiation/libradiation_lib.a [812/923] Generating Fortran dyndep file src/Input_fields/CMakeFiles/input_fields_lib.dir/Fortran.dd [813/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o [814/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/extrapolation.F90.o [815/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o [816/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o [817/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o [818/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [819/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o [820/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o [821/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o [822/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1038:15: 1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1040:15: 1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1042:15: 1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1045:15: 1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1047:15: 1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1049:15: 1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:356:13: 356 | if( ANY(Ts_in == 0.0) ) then | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:620:12: 620 | if(T_in(i,nlev+1)/=missing_value) then | 1 Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:636:12: 636 | if(T_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:638:12: 638 | if(q_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:640:12: 640 | if(u_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:642:12: 642 | if(v_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:647:15: 647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:651:15: 651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:658:12: 658 | if(ug_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:660:12: 660 | if(vg_in(i,nlev+1)==missing_value) & | 1 Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1252:42: 1252 | character dim_name*( NF90_MAX_NAME ) | 1 Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1254:33: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1254:43: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1254:46: 1254 | integer var_ndims, dim_size, dims_set, i, n, var_type | 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1237:60: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1237:54: 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, & | 1 Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1238:23: 1238 | var, use_NF90_REAL, status, required) | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:1167:67: 1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, & | 1 Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:751:51: 751 | get_add_surface_data, ntime, & | 1 Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:750:81: 750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, & | 1 Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:290:32: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:290:38: 290 | integer :: STATUS, i, n, nlat, nlon | 1 Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_core/readiopdata_core_module.F90:291:19: 291 | integer :: varID, NCID | 1 Warning: Unused variable 'varid' declared at (1) [-Wunused-variable] [823/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_module.F90:260:16: 260 | integer :: k | 1 Warning: Unused variable 'k' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_module.F90:264:17: 264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s] | 1 Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable] /home/jenkins/workspace/clubb_branch_jax/src/readiopdata_module.F90:243:31: 243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing ) | 1 Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument] [824/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:57:8: 57 | use input_names, only: & | 1 Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:39:8: 39 | use constants_clubb, only: & | 1 Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:165:13: 165 | p_in_Pa, & ! Pressure [Pa] | 1 Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:160:8: 160 | rt, & ! Total water mixing ratio sounding [kg/kg] | 1 Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:166:10: 166 | subs ! Vertical velocity sounding [m/s or Pa/s] | 1 Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:159:11: 159 | theta, & ! Liquid potential temperature sounding [K] | 1 Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:161:7: 161 | u, & ! u wind sounding [m/s] | 1 Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:163:8: 163 | ug, & ! u geostrophic wind sounding [m/s] | 1 Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:162:7: 162 | v, & ! v wind sounding [m/s] | 1 Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:164:8: 164 | vg, & ! v geostrophic wind sounding [m/s] | 1 Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /home/jenkins/workspace/clubb_branch_jax/src/Input_fields/sounding.F90:158:7: 158 | z, & ! Altitude [m] | 1 Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] [825/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o [826/923] Linking Fortran static library src/Input_fields/libinput_fields_lib.a [827/923] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd [828/923] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd [829/923] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd [830/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o [831/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o [832/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o [833/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o [834/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o [835/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o [836/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o [837/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o [838/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o [839/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o [840/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o [841/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o [842/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o [843/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o [844/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o [845/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o /home/jenkins/workspace/clubb_branch_jax/src/G_unit_test_types/fill_holes_tests.F90:407:27: 407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/G_unit_test_types/fill_holes_tests.F90:406:22: 406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/G_unit_test_types/fill_holes_tests.F90:462:22: 462 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/G_unit_test_types/fill_holes_tests.F90:221:27: 221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/G_unit_test_types/fill_holes_tests.F90:220:22: 220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/G_unit_test_types/fill_holes_tests.F90:275:22: 275 | if ( any( field_rev_rev /= field ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [846/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o [847/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o [848/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o [849/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o [850/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o [851/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o [852/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o [853/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o [854/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o /home/jenkins/workspace/clubb_branch_jax/src/Microphys/ice_dfsn_module.F90:282:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_branch_jax/src/Microphys/ice_dfsn_module.F90:296:27: 214 | do k = gr%nzt, 1, -1 | 2 ...... 296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] [855/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o [856/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o [857/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o [858/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o [859/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o [860/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o [861/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o [862/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_0003.F90.o [863/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o [864/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o [865/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o [866/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o [867/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/fire.F90.o [868/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o [869/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o [870/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o [871/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o [872/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o [873/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o [874/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o [875/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o [876/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o [877/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o [878/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o /home/jenkins/workspace/clubb_branch_jax/src/Benchmark_cases/bomex.F90:22:48: 22 | gr, rtm, l_readiopdata, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [879/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o [880/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o [881/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o [882/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o [883/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o [884/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o [885/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o [886/923] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a [887/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o [888/923] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a [889/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o [890/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o [891/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o [892/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o [893/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o [894/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o [895/923] Linking Fortran static library src/Microphys/libmicrophys_lib.a [896/923] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd [897/923] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd [898/923] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o [899/923] Linking Fortran executable src/G_unit_tests [900/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o [901/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o /home/jenkins/workspace/clubb_branch_jax/src/clubb_driver.F90:5539:76: 5539 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, & | 1 Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument] [902/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver.F90:255:28: 255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) ) | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] [903/923] Linking Fortran static library src/libclubb_driver_lib.a [904/923] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone_loss.dir/Fortran.dd [905/923] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd [906/923] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd [907/923] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd [908/923] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd [909/923] Generating Fortran dyndep file src/CMakeFiles/clubb_loss_driver_test.dir/Fortran.dd [910/923] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o [911/923] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o [912/923] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o [913/923] Linking Fortran executable src/clubb_thread_test [914/923] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o [915/923] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o [916/923] Linking Fortran executable src/clubb_standalone [917/923] Linking Fortran executable src/clubb_driver_test [918/923] Linking Fortran executable src/clubb_standalone_loss [919/923] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:273:14: 273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:278:14: 278 | if ( any( test_correlation /= reference_correlation ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:283:14: 283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:288:14: 288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:293:14: 293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:512:14: 512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:521:14: 521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:520:14: 520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:519:14: 519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:518:14: 518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:517:14: 517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:431:14: 431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then | 1 Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:371:14: 371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:370:14: 370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:369:14: 369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:368:14: 368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] /home/jenkins/workspace/clubb_branch_jax/src/clubb_loss_driver_test.F90:367:14: 367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. & | 1 Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals] [920/923] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o [921/923] Linking Fortran executable src/clubb_loss_driver_test [922/923] Linking Fortran executable src/clubb_tuner [922/923] Install the project... -- Install configuration: "Debug" -- Installing: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a -- Installing: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_tuner -- Set runtime path of "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/G_unit_tests -- Set runtime path of "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_thread_test -- Set runtime path of "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_standalone -- Set runtime path of "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss -- Set runtime path of "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" -- Installing: /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test -- Set runtime path of "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib" CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core PASS: 0 checks failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types [92mBuild completed successfully, and all source code checks passed.[0m [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Full timestep gradients) [Pipeline] catchError [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 tests/run_jax_timestep_gradient_test.py ==> No compatible Python found for cpu; uv will download Python 3.12 ==> Installing uv 0.11.32 in /home/jenkins/workspace/clubb_branch_jax/.clubb-jax-tools/bin downloading uv 0.11.32 x86_64-unknown-linux-gnu installing to /home/jenkins/workspace/clubb_branch_jax/.clubb-jax-tools/bin uv uvx everything's installed! ==> uv is ready: uv 0.11.32 (x86_64-unknown-linux-gnu) Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB) Downloaded cpython-3.12.13-linux-x86_64-gnu (download) Using CPython 3.12.13 Creating virtual environment at: .venv-jax Activate with: source .venv-jax/bin/activate ==> Installing JAX 0.11.0 (cpu) and requirements from /home/jenkins/workspace/clubb_branch_jax/clubb_jax/requirements.txt Using Python 3.12.13 environment at: .venv-jax Resolved 15 packages in 324ms Downloading pygments (1.2MiB) Downloading jaxlib (83.2MiB) Downloading jax (3.1MiB) Downloading netcdf4 (9.7MiB) Downloading numpy (15.9MiB) Downloading cftime (1.6MiB) Downloading scipy (33.7MiB) Downloaded cftime Downloaded pygments Downloaded netcdf4 Downloaded jax Downloaded numpy Downloaded jaxlib Downloaded scipy Prepared 15 packages in 2.89s Installed 15 packages in 41ms + certifi==2026.7.22 + cftime==1.6.6 + iniconfig==2.3.0 + jax==0.11.0 + jaxlib==0.11.0 + ml-dtypes==0.6.0 + netcdf4==1.7.4 + numpy==2.5.3 + opt-einsum==3.4.0 + packaging==26.3 + pluggy==1.6.0 + pygments==2.21.0 + pytest==9.1.1 + scipy==1.18.1 + tabulate==0.10.0 CLUBB JAX runtime: Environment: /home/jenkins/workspace/clubb_branch_jax/.venv-jax (Python 3.12) Accelerator: cpu JAX: 0.11.0 (jaxlib 0.11.0) Device: cpu:0 An NVIDIA GPU may be present on this machine, but a CUDA-enabled jaxlib is not installed. Falling back to cpu. nzm = 88 -- nzt = 87 Initialized bomex case: nzm=88, nzt=87, ngrdcol=1 dt_main=60.0s, time=0.0s to 60.0s, 1 steps bomex: full driver gradient/JVP/finite difference/eager checks passed CLUBB cleanup complete. nzm = 199 -- nzt = 198 Initialized atex case: nzm=199, nzt=198, ngrdcol=1 dt_main=60.0s, time=0.0s to 60.0s, 1 steps atex: full driver gradient/JVP/finite difference/eager checks passed CLUBB cleanup complete. [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Rico microphysics oracle) [Pipeline] catchError [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + python3 run_scripts/run_scm.py rico -max_iters 10 -stats input/stats/all_stats.in -output_dir output/tests/rico_oracle /home/jenkins/workspace/clubb_branch_jax/output/tests/rico_oracle/rico.in Output directory: /home/jenkins/workspace/clubb_branch_jax/output/tests/rico_oracle - using install dir (selected): /home/jenkins/workspace/clubb_branch_jax/install/gcc_DEBUG_PRECdouble - using executable: /home/jenkins/workspace/clubb_branch_jax/run_scripts/../install/selected/clubb_standalone =================== Running rico =================== 2026/10/04 16:07:02 -------------------------------------------------- Latest git log entry -------------------------------------------------- A detailed git diff can be found at the end of this file -------------------------------------------------- Tunable Parameters: -------------------------------------------------- Parameter Value --------- ----- C1 1.00000000000000000000 C1b 1.00000000000000000000 C1c 1.00000000000000000000 C2rt 2.00000000000000000000 C2thl 2.00000000000000000000 C2rtthl 2.00000000000000000000 C4 2.00000000000000000000 C_uu_shr 0.40000000000000002220 C_uu_buoy 0.29999999999999998890 C6rt 2.00000000000000000000 C6rtb 2.00000000000000000000 C6rtc 1.00000000000000000000 C6thl 2.00000000000000000000 C6thlb 2.00000000000000000000 C6thlc 1.00000000000000000000 C7 0.50000000000000000000 C7b 0.50000000000000000000 C7c 0.50000000000000000000 C8 0.50000000000000000000 C8b 0.02000000000000000042 C10 3.29999999999999982236 C11 0.40000000000000002220 C11b 0.40000000000000002220 C11c 0.50000000000000000000 C12 1.00000000000000000000 C13 0.10000000000000000555 C14 1.00000000000000000000 C_wp2_pr_dfsn 0.00000000000000000000 C_wp3_pr_tp 0.00000000000000000000 C_wp3_pr_turb 1.00000000000000000000 C_wp3_pr_dfsn 0.00000000000000000000 C_wp2_splat 0.00000000000000000000 C6rt_Lscale0 14.00000000000000000000 C6thl_Lscale0 14.00000000000000000000 C7_Lscale0 0.84999999999999997780 wpxp_L_thresh 60.00000000000000000000 c_K 0.20000000000000001110 c_K1 0.20000000000000001110 nu1 20.00000000000000000000 c_K2 0.02500000000000000139 nu2 1.00000000000000000000 c_K6 0.37500000000000000000 nu6 5.00000000000000000000 c_K8 5.00000000000000000000 nu8 20.00000000000000000000 c_K9 0.10000000000000000555 nu9 10.00000000000000000000 nu10 0.00000000000000000000 c_K_hm 0.75000000000000000000 c_K_hmb 0.75000000000000000000 K_hm_min_coef 0.10000000000000000555 nu_hm 1.50000000000000000000 slope_coef_spread_DG_means_w 21.00000000000000000000 pdf_component_stdev_factor_w 1.00000000000000000000 coef_spread_DG_means_rt 0.80000000000000004441 coef_spread_DG_means_thl 0.80000000000000004441 gamma_coef 0.25000000000000000000 gamma_coefb 0.25000000000000000000 gamma_coefc 5.00000000000000000000 mu 0.00100000000000000002 beta 1.00000000000000000000 lmin_coef 0.50000000000000000000 omicron 0.50000000000000000000 zeta_vrnce_rat 0.00000000000000000000 upsilon_precip_frac_rat 0.55000000000000004441 lambda0_stability_coef 0.02999999999999999889 mult_coef 0.50000000000000000000 taumin 90.00000000000000000000 taumax 3600.00000000000000000000 Lscale_mu_coef 2.00000000000000000000 Lscale_pert_coef 0.10000000000000000555 alpha_corr 0.14999999999999999445 Skw_denom_coef 4.00000000000000000000 c_K10 1.00000000000000000000 c_K10h 1.00000000000000000000 thlp2_rad_coef 1.00000000000000000000 thlp2_rad_cloud_frac_thresh 0.10000000000000000555 up2_sfc_coef 4.00000000000000000000 Skw_max_mag 10.00000000000000000000 C_invrs_tau_bkgnd 1.10000000000000008882 C_invrs_tau_sfc 0.10000000000000000555 C_invrs_tau_shear 0.14999999999999999445 C_invrs_tau_N2 0.40000000000000002220 C_invrs_tau_N2_wp2 0.20000000000000001110 C_invrs_tau_N2_xp2 0.05000000000000000278 C_invrs_tau_N2_wpxp 0.00000000000000000000 C_invrs_tau_N2_clear_wp3 1.00000000000000000000 C_invrs_tau_wpxp_Ri 0.34999999999999997780 C_invrs_tau_wpxp_N2_thresh 0.00033000000000000000 xp3_coef_base 0.25000000000000000000 xp3_coef_slope 0.01000000000000000021 altitude_threshold 100.00000000000000000000 rtp2_clip_coef 0.50000000000000000000 Cx_min 0.33000000000000001554 Cx_max 0.94999999999999995559 Richardson_num_min 0.25000000000000000000 Richardson_num_max 400.00000000000000000000 a3_coef_min 1.00000000000000000000 a_const 1.80000000000000004441 bv_efold 5.00000000000000000000 wpxp_Ri_exp 0.50000000000000000000 z_displace 25.00000000000000000000 -------------------------------------------------- Preprocessing Directives: -------------------------------------------------- -DCOAMPS_MICRO enabled -DTUNER disabled -Dnooverlap enabled -Draoffline enabled -DUSE_BUGSrad_ocast_random disabled -------------------------------------------------- &model_setting -------------------------------------------------- runtype = rico nzmax = 128 grid_type = 2 deltaz = 40.000000000000000 zm_init = 0.0000000000000000 zm_top = 10000.000000000000 zt_grid_fname = ../input/grid/deep_convection_128lev_27km_zt_grid.grd zm_grid_fname = day = 16 month = 12 year = 2004 lat_vals = 18.000000000000000 lon_vals = -61.500000000000000 sfc_elevation = 0.0000000000000000 time_initial = 0.0000000000000000 time_final = 3000.0000000000000 dt_main = 300.00000000000000 dt_rad = 300.00000000000000 sfctype = 0 T_sfc = 288.00000000000000 p_sfc = 101540.00000000000 sens_ht = 0.0000000000000000 latent_ht = 0.0000000000000000 fcor = 4.5067039999999997E-005 fcor_y = 1.3870208233463652E-004 T0 = 300.00000000000000 ts_nudge = 86400.000000000000 forcings_file_path = l_t_dependent = T l_ignore_forcings = T l_modify_ic_with_cubic_int = T l_modify_bc_for_cnvg_test = T l_input_xpwp_sfc = F saturation_formula = 3 thlm_sponge_damp_settings%l_sponge_damping = F rtm_sponge_damp_settings%l_sponge_damping = F uv_sponge_damp_settings%l_sponge_damping = F wp2_sponge_damp_settings%l_sponge_damping = F wp3_sponge_damp_settings%l_sponge_damping = F up2_vp2_sponge_damp_settings%l_sponge_damping = F thlm_sponge_damp_settings%tau_sponge_damp_min = 60.000000000000000 thlm_sponge_damp_settings%tau_sponge_damp_max = 1800.0000000000000 thlm_sponge_damp_settings%sponge_damp_depth = 0.25000000000000000 rtm_sponge_damp_settings%tau_sponge_damp_min = 60.000000000000000 rtm_sponge_damp_settings%tau_sponge_damp_max = 1800.0000000000000 rtm_sponge_damp_settings%sponge_damp_depth = 0.25000000000000000 uv_sponge_damp_settings%tau_sponge_damp_min = 60.000000000000000 uv_sponge_damp_settings%tau_sponge_damp_max = 1800.0000000000000 uv_sponge_damp_settings%sponge_damp_depth = 0.25000000000000000 wp2_sponge_damp_settings%tau_sponge_damp_min = 60.000000000000000 wp2_sponge_damp_settings%tau_sponge_damp_max = 1800.0000000000000 wp2_sponge_damp_settings%sponge_damp_depth = 0.25000000000000000 wp3_sponge_damp_settings%tau_sponge_damp_min = 60.000000000000000 wp3_sponge_damp_settings%tau_sponge_damp_max = 1800.0000000000000 wp3_sponge_damp_settings%sponge_damp_depth = 0.25000000000000000 up2_vp2_sponge_damp_settings%tau_sponge_damp_min = 60.000000000000000 up2_vp2_sponge_damp_settings%tau_sponge_damp_max = 1800.0000000000000 up2_vp2_sponge_damp_settings%sponge_damp_depth = 0.25000000000000000 l_soil_veg = F l_restart = F l_input_fields = F restart_path_case = restart/rico time_restart = 0.0000000000000000 debug_level = 2 sclr_dim = 0 edsclr_dim = 0 iisclr_thl = -2 iisclr_rt = -1 iisclr_CO2 = -1 sclr_tol = -------------------------------------------------- &stats_setting -------------------------------------------------- l_stats = T output_dir = /home/jenkins/workspace/clubb_branch_jax/output/tests/rico_oracle/ fname_prefix = rico stats_output_filename = rico_stats.nc stats_tsamp = 300.00000000000000 stats_tout = 300.00000000000000 stats_tstart = 0.0000000000000000 stats_tend = 3000.0000000000000 l_allow_small_stats_tout = F Constant flags: l_pos_def = F l_gamma_Skw = T Constant tolerances [units] rt_tol [kg/kg] = 1.0000000000000000E-008 thl_tol [K] = 1.0000000000000000E-002 w_tol [m/s] = 2.0000000000000000E-002 -------------------------------------------------- µphysics_setting -------------------------------------------------- microphys_scheme = khairoutdinov_kogan l_cloud_sed = F sigma_g = 1.5000000000000000 l_graupel = F l_hail = F l_seifert_beheng = F l_predict_Nc = F l_const_Nc_in_cloud = T specify_aerosol = morrison_lognormal l_subgrid_w = T l_arctic_nucl = F l_cloud_edge_activation = F l_fix_pgam = F l_in_cloud_Nc_diff = T l_var_covar_src = T l_upwind_diff_sed = F lh_microphys_type = disabled lh_num_samples = 2 lh_sequence_length = 1 lh_seed = 5489 l_fix_w_chi_eta_correlations = F l_silhs_KK_convergence_adj_mean = F importance_prob_thresh = 1.0000000000000000E-008 host_dx = 1000000.0000000000 host_dy = 1000000.0000000000 hmp2_ip_on_hmm2_ip_slope%rr = 0.0000000000000000 hmp2_ip_on_hmm2_ip_slope%ri = 2.1200000000000000E-005 hmp2_ip_on_hmm2_ip_slope%rs = 2.1200000000000000E-005 hmp2_ip_on_hmm2_ip_slope%rg = 2.1200000000000000E-005 hmp2_ip_on_hmm2_ip_slope%Nr = 0.0000000000000000 hmp2_ip_on_hmm2_ip_slope%Ni = 2.1200000000000000E-005 hmp2_ip_on_hmm2_ip_slope%Ni = 2.1200000000000000E-005 hmp2_ip_on_hmm2_ip_slope%Ng = 2.1200000000000000E-005 hmp2_ip_on_hmm2_ip_intrcpt%rr = 1.2500000000000000 hmp2_ip_on_hmm2_ip_intrcpt%ri = 0.54000000000000004 hmp2_ip_on_hmm2_ip_intrcpt%rs = 0.54000000000000004 hmp2_ip_on_hmm2_ip_intrcpt%rg = 0.54000000000000004 hmp2_ip_on_hmm2_ip_intrcpt%Nr = 1.2500000000000000 hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.54000000000000004 hmp2_ip_on_hmm2_ip_intrcpt%Ni = 0.54000000000000004 hmp2_ip_on_hmm2_ip_intrcpt%Ng = 0.54000000000000004 Ncnp2_on_Ncnm2 = 2.2000000000000002 C_evap = 0.85999999999999999 r_0 = 2.5000000000000001E-005 microphys_start_time = 0.0000000000000000 Nc0_in_cloud = 70000000.000000000 ccnconst = 120.00000000000000 ccnexpnt = 0.40000000596046448 aer_rm1 = 1.1000000021965661E-008 aer_rm2 = 5.9999997858994902E-008 aer_n1 = 125000000.00000000 aer_n2 = 65000000.000000000 aer_sig1 = 1.2000000476837158 aer_sig2 = 1.7000000476837158 pgam_fixed = 5.0000000000000000 precip_frac_calc_type = 2 -------------------------------------------------- &SILHS_setting -------------------------------------------------- Warning: the specified correlations for chi (old s) and Ncn are non-zero. The latin hypercube code will not converge to the analytic solution using these settings. Correlation array (approximate); in cloud: 1.000 0.300 0.090 0.000 0.785 0.831 0.300 1.000 0.027 0.000 0.018 0.004 0.090 0.027 1.000 0.468 0.000 0.000 0.000 0.000 0.468 1.000 0.000 0.000 0.785 0.018 0.000 0.000 1.000 0.802 0.831 0.004 0.000 0.000 0.802 1.000 Correlation array (approximate); below cloud: 1.000 0.300 0.090 0.000 0.589 0.546 0.300 1.000 0.027 0.000 0.018 0.004 0.090 0.027 1.000 0.468 0.000 0.000 0.000 0.000 0.468 1.000 0.000 0.000 0.589 0.018 0.000 0.000 1.000 0.895 0.546 0.004 0.000 0.000 0.895 1.000 -------------------------------------------------- &radiation_setting -------------------------------------------------- rad_scheme = none sol_const = 1367.0000000000000 alvdr = 0.10000000000000001 alvdf = 0.10000000000000001 alndr = 0.10000000000000001 alndf = 0.10000000000000001 radiation_top = 50000.000000000000 F0 = 100.00000000000000 F1 = 20.000000000000000 kappa = 119.00000000000000 gc = 0.85999999999999999 omega = 0.99650000000000005 slr = 1.0000000000000000 l_rad_above_cloud = F l_sw_radiation = F l_fix_cos_solar_zen = F l_use_default_std_atmosphere = T Fs_values = 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 cos_solar_zen_values = -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 cos_solar_zen_times = -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 -999.00000000000000 eff_drop_radius = 1.0000000000000001E-005 -------------------------------------------------- &configurable_clubb_flags_nl -------------------------------------------------- iiPDF_type = 1 ipdf_call_placement = 2 penta_solve_method = 2 tridiag_solve_method = 2 grid_remap_method = 1 grid_adapt_in_time_method = 0 l_use_precip_frac = T l_predict_upwp_vpwp = T l_ho_nontrad_coriolis = F l_ho_trad_coriolis = F l_min_wp2_from_corr_wx = F l_min_xp2_from_corr_wx = T l_C2_cloud_frac = F l_diffuse_rtm_and_thlm = F l_stability_correct_Kh_N2_zm = F l_calc_thlp2_rad = F l_upwind_xpyp_ta = T l_upwind_xm_ma = T l_uv_nudge = F l_rtm_nudge = F l_vert_avg_closure = F l_trapezoidal_rule_zt = F l_trapezoidal_rule_zm = F l_call_pdf_closure_twice = F l_standard_term_ta = F l_partial_upwind_wp3 = F l_godunov_upwind_wpxp_ta = F l_godunov_upwind_xpyp_ta = F l_use_cloud_cover = F l_diagnose_correlations = F l_calc_w_corr = F l_const_Nc_in_cloud = T l_fix_w_chi_eta_correlations = F l_stability_correct_tau_zm = F l_damp_wp2_using_em = T l_do_expldiff_rtm_thlm = F l_Lscale_plume_centered = F l_diag_Lscale_from_tau = F l_use_C7_Richardson = T l_use_C11_Richardson = F l_use_shear_Richardson = F l_brunt_vaisala_freq_moist = F l_use_thvm_in_bv_freq = F l_rcm_supersat_adj = T l_damp_wp3_Skw_squared = T l_prescribed_avg_deltaz = F l_lmm_stepping = F l_e3sm_config = F l_vary_convect_depth = F l_use_tke_in_wp3_pr_turb_term = T l_use_tke_in_wp2_wp3_K_dfsn = F l_use_wp3_lim_with_smth_Heaviside = F l_smooth_Heaviside_tau_wpxp = T l_modify_limiters_for_cnvg_test = F l_enable_relaxed_clipping = F l_linearize_pbl_winds = F l_mono_flux_lim_thlm = T l_mono_flux_lim_rtm = T l_mono_flux_lim_um = T l_mono_flux_lim_vm = T l_mono_flux_lim_spikefix = T l_host_applies_sfc_fluxes = F l_wp2_fill_holes_tke = T l_add_dycore_grid = F -------------------------------------------------- git diff src/ -------------------------------------------------- See *setup.txt file in output folder Path to sounding: rico_sounding.in File exists? T Path to sclr_sounding: rico_sclr_sounding.in File exists? T Path to edsclr_sounding: rico_edsclr_sounding.in File exists? T Reading in sounding information z = 0.0000000000000000 100.00000000000000 200.00000000000000 300.00000000000000 400.00000000000000 500.00000000000000 600.00000000000000 700.00000000000000 740.00000000000000 800.00000000000000 900.00000000000000 1000.0000000000000 1100.0000000000000 1200.0000000000000 1300.0000000000000 1400.0000000000000 1500.0000000000000 1600.0000000000000 1700.0000000000000 1800.0000000000000 1900.0000000000000 2000.0000000000000 2100.0000000000000 2200.0000000000000 2260.0000000000000 2300.0000000000000 2400.0000000000000 2500.0000000000000 2600.0000000000000 2700.0000000000000 2800.0000000000000 2900.0000000000000 3000.0000000000000 3100.0000000000000 3200.0000000000000 3260.0000000000000 3300.0000000000000 3400.0000000000000 3500.0000000000000 3600.0000000000000 3700.0000000000000 3800.0000000000000 3900.0000000000000 4000.0000000000000 4100.0000000000000 4200.0000000000000 4300.0000000000000 4400.0000000000000 4500.0000000000000 4600.0000000000000 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fill_holes_driver_api at i, k= 1 12 Nrm < 0.0000000000000000 in fill_holes_driver_api at i, k= 1 11 Nrm < 0.0000000000000000 in fill_holes_driver_api at i, k= 1 12 iteration: 5 / 10 -- time = 1500.0s / 3000.0s iteration: 6 / 10 -- time = 1800.0s / 3000.0s iteration: 7 / 10 -- time = 2100.0s / 3000.0s iteration: 8 / 10 -- time = 2400.0s / 3000.0s iteration: 9 / 10 -- time = 2700.0s / 3000.0s iteration: 10 / 10 -- time = 3000.0s / 3000.0s Writing timing results to: /home/jenkins/workspace/clubb_branch_jax/output/tests/rico_oracle/rico.timing Program exited normally -------------------------------------------------- run_scm.py total runtime: 0.65 s -------------------------------------------------- + python3 tests/run_rico_microphysics_oracle_test.py -stats_file output/tests/rico_oracle/rico_stats.nc CLUBB JAX runtime: Environment: /home/jenkins/workspace/clubb_branch_jax/.venv-jax (Python 3.12) Accelerator: cpu JAX: 0.11.0 (jaxlib 0.11.0) Device: cpu:0 An NVIDIA GPU may be present on this machine, but a CUDA-enabled jaxlib is not installed. Falling back to cpu. KK_auto vs rico rrm_auto: 159 pts, sig max 2.6e-15, median 1.2e-15 PASS KK_accr vs rico rrm_accr: 35 pts, sig max 8.3e-15, median 4.1e-16 PASS KK_evap vs rico rrm_evap: 35 pts, 35 match <1e-4, median 3.0e-16 PASS KK_microphys_adjust vs rico: rcm_mc exact (74 pts), rrm_mc exact at no-evap-adj pts (44), thlm_mc self-consistent PASS Nc_in_cloud_to_Ncnm vs rico Ncnm (const-Ncn): max rel 0.0e+00 PASS precip_fraction vs rico: well-resolved (32 pts) bit-exact (pf 0.0e+00, pf1 0.0e+00, pf2 0.0e+00); 25 tol-boundary edge levels PASS Rico microphysics oracle checks passed [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Expected failure test) [Pipeline] catchError [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + python3 tests/run_jax_comparison_mutation_test.py CLUBB JAX runtime: Environment: /home/jenkins/workspace/clubb_branch_jax/.venv-jax (Python 3.12) Accelerator: cpu JAX: 0.11.0 (jaxlib 0.11.0) Device: cpu:0 Mutation test artifacts: /home/jenkins/workspace/clubb_branch_jax/output/tests/jax_comparison_mutation_8by3s9u0 Control: running unmodified bomex comparison... Control passed. Mutation heating: running comparison... PASS heating: thlm mean absolute difference 0.00015; failing columns [1, 2, 3, 4]. Mutation parameter_handling: running comparison... PASS parameter_handling: wp3 mean absolute difference 9.25992e-07; failing columns [2, 3, 4]. Mutation first_column: running comparison... PASS first_column: wp3 mean absolute difference 4.69019e-07; failing columns [2, 3, 4]. Mutation missing_stat: running comparison... PASS missing_stat: wprtp absent only from JAX output; strict comparison rejected it. ============================================================================== Expected failure test: PASS ============================================================================== Case: bomex | 4 timesteps x 60 s | 4 columns | CPU/double Statistics: input/stats/multi_col_stats.in Tolerances: JAX-versus-Fortran harness defaults (absolute 1e-07; percentage 1e-07%) [PASS] Unmodified control — JAX and Fortran matched. [PASS] heating Add 1e-6 K/s of spurious heating to every column. Numerical difference detected; both models completed 4 timesteps. thlm: mean absolute difference 0.00015; mean percentage difference 4.91235e-05% Failing columns: 1, 2, 3, 4; first comparison failure: timestep 1. [PASS] parameter_handling Load C8 as [0.2, 0.3, 0.4, 0.5] instead of [0.2, 0.4, 0.6, 0.8]. Numerical difference detected; both models completed 4 timesteps. wp3: mean absolute difference 9.25992e-07; mean percentage difference 0.244887% Failing columns: 2, 3, 4; first comparison failure: timestep 1. [PASS] first_column Use column 1's previous wp3 in every column's timestep equation. Numerical difference detected; both models completed 4 timesteps. wp3: mean absolute difference 4.69019e-07; mean percentage difference 0.118965% Failing columns: 2, 3, 4; first comparison failure: timestep 3. [PASS] missing_stat Omit wprtp from JAX statistics output while keeping its calculation. wprtp is missing only from JAX output; both models completed 4 timesteps. Strict bindiff detected the missing variable; other stats were unchanged. Result: PASS — 4/4 mutations verified | 124.3 s Logs and outputs: /home/jenkins/workspace/clubb_branch_jax/output/tests/jax_comparison_mutation_8by3s9u0 ============================================================================== [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Jax vs Fortran: standard stats) [Pipeline] catchError [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ulimit -s 8388608 + ./tests/run_jax_vs_fortran_cases.py -workers 8 CLUBB JAX runtime: Environment: /home/jenkins/workspace/clubb_branch_jax/.venv-jax (Python 3.12) Accelerator: cpu JAX: 0.11.0 (jaxlib 0.11.0) Device: cpu:0 Run settings: Output: /home/jenkins/workspace/clubb_branch_jax/output/tests/jax_driver_test_results Statistics: input/stats/standard_stats.in Debug: case default Columns: 4 Workers: 8 Comparison limits: absolute 1e-07; percentage 1e-07% Cases and flag sets: 20 cases x 1 flag set = 20 JAX/Fortran pairs Flag sets: default Cases: arm (360 iterations) atex (360 iterations) bomex (native duration) cobra (360 iterations) dycoms2_rf01 (native duration) dycoms2_rf01_fixed_sst (300 iterations) dycoms2_rf02_nd (native duration) fire (native duration) gabls2 (360 iterations) gabls3_night (360 iterations) jun25_altocu (180 iterations) neutral (native duration) wangara (native duration) dycoms2_rf02_do (native duration) dycoms2_rf02_ds (240 iterations) lba_kk (360 iterations) - input case: lba - microphysics_setting.microphys_scheme = "khairoutdinov_kogan" - microphysics_setting.lh_microphys_type = "disabled" - microphysics_setting.l_ice_microphys = .false. - microphysics_setting.l_graupel = .false. rico (380 iterations) - dt_main: 60 s lba (93 iterations) - percentage limit: 0.001% - microphysics_setting.lh_microphys_type = "disabled" clex9_oct14 (73 iterations) - percentage limit: 0.001% nov11_altocu (62 iterations) - percentage limit: 0.001% [Status ] Flag set Case Timesteps JAX (s) Fortran (s) Total (s) ----------------------------------------------------------------------------------------------------------------- [match ] default fire 180 / 180 168.7 4.2 179.7 [match ] default dycoms2_rf01_fixed_sst 300 / 300 218.6 3.6 231.9 [match ] default dycoms2_rf02_nd 360 / 360 261.5 6.6 277.5 [match ] default dycoms2_rf01 240 / 240 237.9 21.1 282.3 [match ] default bomex 360 / 360 274.3 8.5 294.5 [match ] default arm 360 / 360 277.7 11.0 303.4 [match ] default cobra 360 / 360 293.4 12.1 317.3 [match ] default atex 360 / 360 288.6 16.7 319.9 [match ] default gabls3_night 360 / 360 100.1 6.2 109.8 [match ] default gabls2 360 / 360 136.0 22.1 162.9 [match ] default jun25_altocu 180 / 180 191.1 9.0 209.2 [match ] default neutral 360 / 360 305.0 8.4 323.1 [match ] default lba 93 / 93 303.4 6.7 320.0 [match ] default wangara 480 / 480 352.1 9.1 371.7 Sending interrupt signal to process Aborted by Gunther Huebler [match ] default rico 380 / 380 337.3 9.7 351.2 Comparison interrupted; stopped all active case process groups. Terminated script returned exit code 143 [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Jax Python vs Fortran cases w varying flags) Stage "Run Jax Python vs Fortran cases w varying flags" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: fcc3d9a6-8e14-4cab-89e7-6e2e0d3d3fae Finished: ABORTED