Started by an SCM change Obtained jenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on mitch in /home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git No credentials specified Fetching changes from the remote Git repository Checking out Revision 003b6cf728915e52cba23dc54bd3ae5ea9ee6364 (refs/remotes/origin/master) Commit message: "add fix for grid generalization" > git rev-parse --resolve-git-dir /home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test/.git # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 003b6cf728915e52cba23dc54bd3ae5ea9ee6364 # timeout=10 > git rev-list --no-walk 25d5bed515ab3d6e11e43419ef1fc3a71777e545 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Turn Off All Other Units Tests) [Pipeline] sh + sed -i s:true:false:g input_misc/G_unit_tests.in [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Enable the Reverse Direction Grid Test) [Pipeline] sh + sed -i 's:l_rev_direction_grid_test.*:l_rev_direction_grid_test = .true.:g' input_misc/G_unit_tests.in [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + compile/compile.bash -c config/linux_x86_64_gfortran_debug.bash ......................................................................................................................................................................... Make.clubb_lapack is ready. .................................................................................... Make.clubb_param is ready. ......................... Make.clubb_bugsrad is ready. ... Make.microphys_utils is ready. ..... Make.clubb_parabolic is ready. .............. Make.clubb_KK_microphys is ready. ................................................. Make.clubb_coamps is ready. ... Make.clubb_morrison is ready. ... Make.clubb_gfdlact is ready. ............. Make.silhs is ready. .................................................................... Make.clubb_other is ready. ... Make.clubb_standalone is ready. ... Make.clubb_thread_test is ready. ............ Make.clubb_tuner is ready. ... Make.jacobian is ready. ................. Make.G_unit_tests is ready. ... Make.int2txt is ready. cd /home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test/compile/../obj; make -f Make.clubb_param cd /home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test/compile/../obj; make -f Make.clubb_gfdlact make[1]: Entering directory '/home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test/obj' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test/obj' make[1]: Entering directory '/home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test/obj' gfortran -DNETCDF -D__GFORTRAN__ -DCLUBB_REAL_TYPE=8 -DCOAMPS_MICRO -DNR_SP -DSILHS -Dradoffline -Dnooverlap -DCLUBB -I/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-rr4amopxiouymfpd5tw5ducrmg4u7a6i/include/ -march=native -msse3 -mfpmath=sse -fopenmp -Wall -Wextra -O -g -fbounds-check -mieee-fp -ffpe-trap=invalid,zero,overflow -finit-real=snan -finit-integer=-99999 -finit-logical=false -fall-intrinsics -fbacktrace -O0 -Wall -Wextra -Wconversion -Wunderflow -Wcharacter-truncation -std=f2008 -pedantic -c /home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test/compile/../src/CLUBB_core/remapping_module.F90 /home/jenkins/workspace/clubb_G_unit_reverse_dir_grid_test/compile/../src/CLUBB_core/remapping_module.F90:1171:43: 1171 | if(f(i,k+1)*f(i,k-1) 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 128 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/bomex.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 91 : if ( sclr_idx%iiedsclr_thl > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 92 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/dycoms2_rf01.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 121 : if ( sclr_idx%iiedsclr_thl > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 122 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/dycoms2_rf02.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 152 : if ( sclr_idx%iiedsclr_thl > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 153 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/gabls2.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 96 : if ( sclr_idx%iiedsclr_thl > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 97 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 176 : wpthlp_sfc(i) = convert_sens_ht_to_km_s( ( 270._core_rknd * ft**1.5_core_rknd ), rho_sfc(i) ) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 177 : wprtp_sfc(i) = convert_latent_ht_to_m_s( ( 554._core_rknd * ft**1.3_core_rknd ), rho_sfc(i) ) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/lba.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 157 : if ( sclr_idx%iiedsclr_thl > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 158 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/mpace_b.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 272 : if ( sclr_idx%iiedsclr_thl > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 273 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/mpace_a.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 159 : if ( sclr_idx%iiedsclr_thl > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 160 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/rico.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 104 : if ( sclr_idx%iiedsclr_thl > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_thl) = thlm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 105 : if ( sclr_idx%iiedsclr_rt > 0 ) edsclrm_forcing(i,k,sclr_idx%iiedsclr_rt) = rtm_forcing(i,k) CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/Benchmark_cases/wangara.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/KK_microphys/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/SILHS/*.F90 CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. perl ../utilities/CLUBBStandardsCheck.pl ../src/G_unit_test_types/*.F90 CLUBBStandardsCheck.pl has begun. -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Number of "private" statements does not not match number of modules. CLUBBStandardsCheck.pl WARNING: Private Test failed! ../src/G_unit_test_types/rev_direction_grid_test.F90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 229 : !seed used = -1102123834 1480475276 -248259584 525496705 1614213535 -1267052688 6290033 -78466652 CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 230 : !seed_output = (/ -1102123834, 1480475276, -248259584, 525496705, 1614213535, -1267052688, 6290033, -78466652 /) CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 746 : call xpyp_term_ta_pdf_lhs_godunov( gr_ascending%nzm, gr_ascending%nzt, 1, gr_ascending, & ! In CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 750 : call xpyp_term_ta_pdf_lhs_godunov( gr_descending%nzm, gr_descending%nzt, 1, gr_descending, & ! In CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 791 : call xpyp_term_ta_pdf_rhs_godunov( gr_ascending%nzm, gr_ascending%nzt, 1, gr_ascending, & ! In CLUBBStandardsCheck.pl WARNING: Line has exceeded 100 characters. 797 : call xpyp_term_ta_pdf_rhs_godunov( gr_descending%nzm, gr_descending%nzt, 1, gr_descending, & ! In CLUBBStandardsCheck.pl WARNING: File has lines that exceed 100 characters. ../src/G_unit_test_types/rev_direction_grid_test.F90 -------------------------------------------------------------------------------- CLUBBStandardsCheck.pl has finished. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + run_scripts/run_G_unit_tests.bash Running G_unit_tests ================================================== Performing 'mean vertical velocity in clouds' tests Success! ================================================== Performing reverse direction grid unit test =========================================== Grid type 1 -- evenly-spaced grid --------------------------------- Grid type 2 -- declared on thermodynamic levels ----------------------------------------------- Grid type 3 -- declared on momentum levels ------------------------------------------ Success! All tests have succeeded. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS