+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ . /opt/lmod//lmod/lmod/init/profile
+++ '[' -z '' ']'
+++ LMOD_ALLOW_ROOT_USE=yes
+++ '[' -n '' ']'
+++ '[' yes '!=' yes ']'
+++ '[' -z '' ']'
+++ export MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles
+++ MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles
+++ export USER=jenkins
+++ USER=jenkins
++++ uname
+++ export LMOD_sys=Linux
+++ LMOD_sys=Linux
+++ '[' -z '' ']'
+++ '[' -f /etc/lmod/.modulespath ']'
+++ LMOD_MODULEPATH_INIT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath
+++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath ']'
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
+++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
+++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ '[' -n '' ']'
+++ export BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
+++ BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ export MANPATH=:
+++ MANPATH=:
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto MANPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man
+++ export MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man:
+++ MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man:
+++ findExec READLINK_CMD /usr/bin/readlink readlink
+++ Nm=READLINK_CMD
+++ confPath=/usr/bin/readlink
+++ execNm=readlink
+++ eval READLINK_CMD=/usr/bin/readlink
++++ READLINK_CMD=/usr/bin/readlink
+++ '[' '!' -x /usr/bin/readlink ']'
+++ unset Nm confPath execNm
+++ findExec PS_CMD /usr/bin/ps ps
+++ Nm=PS_CMD
+++ confPath=/usr/bin/ps
+++ execNm=ps
+++ eval PS_CMD=/usr/bin/ps
++++ PS_CMD=/usr/bin/ps
+++ '[' '!' -x /usr/bin/ps ']'
+++ unset Nm confPath execNm
+++ findExec EXPR_CMD /usr/bin/expr expr
+++ Nm=EXPR_CMD
+++ confPath=/usr/bin/expr
+++ execNm=expr
+++ eval EXPR_CMD=/usr/bin/expr
++++ EXPR_CMD=/usr/bin/expr
+++ '[' '!' -x /usr/bin/expr ']'
+++ unset Nm confPath execNm
+++ findExec BASENAME_CMD /usr/bin/basename basename
+++ Nm=BASENAME_CMD
+++ confPath=/usr/bin/basename
+++ execNm=basename
+++ eval BASENAME_CMD=/usr/bin/basename
++++ BASENAME_CMD=/usr/bin/basename
+++ '[' '!' -x /usr/bin/basename ']'
+++ unset Nm confPath execNm
+++ unset -f findExec
+++ '[' -f /proc/2624589/exe ']'
++++ /usr/bin/readlink /proc/2624589/exe
+++ my_shell=/usr/bin/bash
++++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)'
+++ my_shell=/usr/bin/bash
++++ /usr/bin/basename /usr/bin/bash
+++ my_shell=bash
+++ case ${my_shell} in
+++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash ']'
+++ . /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
++++ '[' -z '' ']'
++++ case "$-" in
++++ __lmod_vx=x
++++ '[' -n x ']'
++++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
++++ unset __lmod_vx
+++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7,
netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_varying_flags_gfortran_test_config
-- The Fortran compiler identification is GNU 13.1.0
-- The C compiler identification is GNU 13.1.0
-- The CXX compiler identification is GNU 13.1.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/gfortran - skipped
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/gcc-13.1.0-ly4g5v5mnoe2su6clyt6sk674bfvfow2/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiling with double precision
-- Performing Test NETCDF_ABI_COMPATIBLE
-- Performing Test NETCDF_ABI_COMPATIBLE - Success
-- SUCCESS: netcdf-fortran found.
-- -> Library : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib/libnetcdff.so
-- -> Modules : /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/include
-- Configuring done (2.1s)
-- Generating done (0.3s)
-- Build files have been written to: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/build/gcc_DEBUG_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/build/gcc_DEBUG_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/build/gcc_DEBUG_PRECdouble
Running CMake configure...
[ 1%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/lsame.f.o
[ 1%] Building Fortran object src/Lapack/Lapack_shared/CMakeFiles/clubb_lapack_shared.dir/xerbla.f.o
[ 1%] Building Fortran object src/Microphys/SCM_Activation/CMakeFiles/scm_activation_lib.dir/aer_ccn_act_k.F90.o
[ 1%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dasum.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/daxpy.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/ddot.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslc.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dcopy.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/ilaslr.f.o
[ 2%] Built target clubb_lapack_shared
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbcon.f.o
[ 2%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbequ.f.o
[ 3%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbmv.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/isamax.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sasum.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/saxpy.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbrfs.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/scopy.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sdot.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsvx.f.o
[ 5%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtf2.f.o
[ 4%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbsv.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbcon.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbmv.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbequ.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrf.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgbtrs.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgemm.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbsv.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbrfs.f.o
[ 6%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgemv.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbsvx.f.o
[ 7%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtf2.f.o
[ 8%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dger.f.o
[ 8%] Linking Fortran static library libscm_activation_lib.a
[ 8%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtcon.f.o
[ 8%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtrf.f.o
[ 8%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgbtrs.f.o
[ 8%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtrfs.f.o
[ 8%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtsv.f.o
[ 9%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtsvx.f.o
[ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgemm.f.o
[ 10%] Built target scm_activation_lib
[ 10%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgttrf.f.o
[ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgemv.f.o
[ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sger.f.o
[ 10%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgttrs.f.o
[ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtcon.f.o
[ 10%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtrfs.f.o
[ 10%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dgtts2.f.o
[ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtsv.f.o
[ 11%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/disnan.f.o
[ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtsvx.f.o
[ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgttrf.f.o
[ 11%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgttrs.f.o
[ 12%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlabad.f.o
[ 12%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlacn2.f.o
[ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sgtts2.f.o
[ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/sisnan.f.o
[ 13%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlacpy.f.o
[ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slabad.f.o
[ 13%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlae2.f.o
[ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slacn2.f.o
[ 13%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slacpy.f.o
[ 14%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slae2.f.o
[ 14%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaev2.f.o
[ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlagtm.f.o
[ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaisnan.f.o
[ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlamch.f.o
[ 15%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaev2.f.o
[ 15%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slagtm.f.o
[ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlangb.f.o
[ 15%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slaisnan.f.o
[ 15%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlanst.f.o
[ 16%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlangt.f.o
[ 16%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slamch.f.o
[ 17%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slangb.f.o
[ 17%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slangt.f.o
[ 17%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlansy.f.o
[ 17%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlantb.f.o
[ 17%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slanst.f.o
[ 17%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlapy2.f.o
[ 18%] Building Fortran object src/Lapack/Lapack_double/CMakeFiles/clubb_lapack_double.dir/dlaqgb.f.o
[ 18%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slansy.f.o
[ 19%] Building Fortran object src/Lapack/Lapack_single/CMakeFiles/clubb_lapack_single.dir/slantb.f.o
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1212 | if(f(i,k+1)*f(i,k-1)<zero .and. df2(i,k)/=zero) then
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/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/SILHS/silhs_importance_sample_module.F90:642:62:
637 | do category=1, num_importance_categories
| 2
......
642 | rand_vect(sample) < category_cumulative_probs(category+1) ) then
| 1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
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/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Numerical_recipes/ran_state.f90:8:59:
8 | INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1
| 1
Warning: Integer outside symmetric range implied by Standard Fortran at (1)
[ 80%] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o
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[ 80%] Built target numerical_recipes_lib
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[ 80%] Linking Fortran static library libradiation_lib.a
[ 80%] Built target radiation_lib
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o
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/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1038:15:
1038 | if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1040:15:
1040 | if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1042:15:
1042 | if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1045:15:
1045 | if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1047:15:
1047 | if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1049:15:
1049 | if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:356:13:
356 | if( ANY(Ts_in == 0.0) ) then
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:620:12:
620 | if(T_in(i,nlev+1)/=missing_value) then
| 1
Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:636:12:
636 | if(T_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:638:12:
638 | if(q_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:640:12:
640 | if(u_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:642:12:
642 | if(v_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:647:15:
647 | if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:651:15:
651 | if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:658:12:
658 | if(ug_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:660:12:
660 | if(vg_in(i,nlev+1)==missing_value) &
| 1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1252:42:
1252 | character dim_name*( NF90_MAX_NAME )
| 1
Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1254:33:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1254:43:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1254:46:
1254 | integer var_ndims, dim_size, dims_set, i, n, var_type
| 1
Warning: Unused variable 'i' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1237:60:
1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &
| 1
Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1237:54:
1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &
| 1
Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1238:23:
1238 | var, use_NF90_REAL, status, required)
| 1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1167:67:
1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, &
| 1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:751:51:
751 | get_add_surface_data, ntime, &
| 1
Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:750:81:
750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, &
| 1
Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:290:32:
290 | integer :: STATUS, i, n, nlat, nlon
| 1
Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:290:38:
290 | integer :: STATUS, i, n, nlat, nlon
| 1
Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:291:19:
291 | integer :: varID, NCID
| 1
Warning: Unused variable 'varid' declared at (1) [-Wunused-variable]
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/input_reader.F90:498:28:
491 | do i=1, dim_grid
| 2
......
498 | if ( grid(i) < grid(i-1) ) then
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[ 80%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_netcdf.F90.o
[ 81%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_utils.F90.o
[ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
[ 82%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o
[ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o
[ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_module.F90:260:16:
260 | integer :: k
| 1
Warning: Unused variable 'k' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_module.F90:264:17:
264 | qtm_forcing ! Specified total water spec. humidity tendency [kg/kg/s]
| 1
Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/readiopdata_module.F90:243:31:
243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing )
| 1
Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument]
[ 83%] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:39:8:
39 | use constants_clubb, only: &
| 1
Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:57:8:
57 | use input_names, only: &
| 1
Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:39:8:
39 | use constants_clubb, only: &
| 1
Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:165:13:
165 | p_in_Pa, & ! Pressure [Pa]
| 1
Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:160:8:
160 | rt, & ! Total water mixing ratio sounding [kg/kg]
| 1
Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:166:10:
166 | subs ! Vertical velocity sounding [m/s or Pa/s]
| 1
Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:159:11:
159 | theta, & ! Liquid potential temperature sounding [K]
| 1
Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:161:7:
161 | u, & ! u wind sounding [m/s]
| 1
Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:163:8:
163 | ug, & ! u geostrophic wind sounding [m/s]
| 1
Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:162:7:
162 | v, & ! v wind sounding [m/s]
| 1
Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:164:8:
164 | vg, & ! v geostrophic wind sounding [m/s]
| 1
Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Input_fields/sounding.F90:158:7:
158 | z, & ! Altitude [m]
| 1
Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[ 83%] Linking Fortran static library libinput_fields_lib.a
[ 83%] Built target input_fields_lib
[ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o
[ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
[ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o
[ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o
[ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[ 83%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:407:27:
407 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:406:22:
406 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:462:22:
462 | if ( any( field_rev_rev /= field ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:221:27:
221 | .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:220:22:
220 | if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:275:22:
275 | if ( any( field_rev_rev /= field ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o
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[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
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[ 86%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o
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[ 90%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[ 90%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o
[ 90%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
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/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Microphys/ice_dfsn_module.F90:282:27:
214 | do k = gr%nzt, 1, -1
| 2
......
282 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Microphys/ice_dfsn_module.F90:296:27:
214 | do k = gr%nzt, 1, -1
| 2
......
296 | mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[ 90%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
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/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/Benchmark_cases/bomex.F90:22:48:
22 | gr, rtm, l_readiopdata, &
| 1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o
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[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o
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[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
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[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o
[ 94%] Linking Fortran static library libG_unit_test_lib.a
[ 94%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
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[ 95%] Built target G_unit_test_lib
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[ 95%] Linking Fortran static library libbenchmark_cases_lib.a
[ 95%] Built target benchmark_cases_lib
[ 95%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
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[ 96%] Built target microphys_lib
[ 96%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
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/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_driver.F90:5539:76:
5539 | p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, &
| 1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[ 97%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver.F90:255:28:
255 | is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) )
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[ 97%] Linking Fortran static library libclubb_driver_lib.a
[ 97%] Built target clubb_driver_lib
[ 97%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
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[ 99%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:273:14:
273 | if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:278:14:
278 | if ( any( test_correlation /= reference_correlation ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:283:14:
283 | if ( any( test_std_ratio /= reference_std_ratio ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:288:14:
288 | if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:293:14:
293 | if ( any( test_bias_norm /= reference_bias_norm ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:512:14:
512 | if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:521:14:
521 | any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:520:14:
520 | any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:519:14:
519 | any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:518:14:
518 | any( reinit_correlation_1 /= reinit_correlation_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:517:14:
517 | if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:431:14:
431 | if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then
| 1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:371:14:
371 | any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:370:14:
370 | any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:369:14:
369 | any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:368:14:
368 | any( manual_correlation_2 /= manual_correlation_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_loss_driver_test.F90:367:14:
367 | if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. &
| 1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[100%] Linking Fortran executable clubb_thread_test
[100%] Linking Fortran executable clubb_standalone
[100%] Linking Fortran executable clubb_driver_test
[100%] Linking Fortran executable clubb_standalone_loss
[100%] Built target clubb_thread_test
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[100%] Built target clubb_driver_test
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[100%] Built target clubb_loss_driver_test
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[100%] Built target clubb_tuner
Install the project...
-- Install configuration: "Debug"
-- Installing: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_tuner
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/G_unit_tests
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test
-- Set non-toolchain portion of runtime path of "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
Reading settings from input/flag_sets/run_bindiff_w_flags_config_core_flags.json...
Running 228 run_scm.py task(s) with up to 8 worker(s)...
COMPLETE -- default / wangara
COMPLETE -- default / arm
COMPLETE -- default / bomex
COMPLETE -- default / gabls3_night
COMPLETE -- default / rico
COMPLETE -- default / atex
COMPLETE -- default / bomex_5day_4scam
COMPLETE -- default / dycoms2_rf01
COMPLETE -- flag1 / arm
COMPLETE -- flag1 / atex
COMPLETE -- flag1 / bomex
COMPLETE -- default / dycoms2_rf02_ds
COMPLETE -- default / arm_97
COMPLETE -- flag1 / dycoms2_rf01
COMPLETE -- flag1 / wangara
COMPLETE -- flag1 / gabls3_night
COMPLETE -- flag1 / rico
COMPLETE -- flag1 / bomex_5day_4scam
COMPLETE -- default / twp_ice
COMPLETE -- flag2 / arm
COMPLETE -- flag1 / dycoms2_rf02_ds
COMPLETE -- flag2 / atex
COMPLETE -- flag2 / bomex
COMPLETE -- flag1 / arm_97
COMPLETE -- flag2 / wangara
COMPLETE -- flag2 / dycoms2_rf01
COMPLETE -- flag2 / gabls3_night
COMPLETE -- flag2 / rico
COMPLETE -- flag1 / twp_ice
COMPLETE -- flag2 / bomex_5day_4scam
COMPLETE -- flag2 / dycoms2_rf02_ds
COMPLETE -- flag3 / arm
COMPLETE -- flag3 / atex
COMPLETE -- flag2 / arm_97
COMPLETE -- flag3 / bomex
COMPLETE -- flag3 / wangara
COMPLETE -- flag3 / rico
COMPLETE -- flag3 / dycoms2_rf01
COMPLETE -- flag3 / gabls3_night
COMPLETE -- flag2 / twp_ice
COMPLETE -- default / lba
COMPLETE -- flag3 / bomex_5day_4scam
COMPLETE -- flag3 / dycoms2_rf02_ds
COMPLETE -- flag4 / arm
COMPLETE -- flag4 / bomex
COMPLETE -- flag4 / atex
COMPLETE -- flag3 / arm_97
COMPLETE -- flag4 / rico
COMPLETE -- flag4 / wangara
COMPLETE -- flag4 / dycoms2_rf01
COMPLETE -- flag1 / lba
COMPLETE -- flag3 / twp_ice
COMPLETE -- flag4 / gabls3_night
COMPLETE -- flag4 / bomex_5day_4scam
COMPLETE -- flag4 / dycoms2_rf02_ds
COMPLETE -- flag5 / arm
COMPLETE -- flag5 / bomex
COMPLETE -- flag2 / lba
COMPLETE -- flag5 / atex
COMPLETE -- flag5 / dycoms2_rf01
COMPLETE -- flag4 / arm_97
COMPLETE -- flag5 / wangara
COMPLETE -- flag5 / gabls3_night
COMPLETE -- flag4 / twp_ice
COMPLETE -- flag5 / rico
COMPLETE -- flag5 / bomex_5day_4scam
COMPLETE -- flag5 / dycoms2_rf02_ds
COMPLETE -- flag5 / arm_97
COMPLETE -- flag6 / arm
COMPLETE -- flag3 / lba
COMPLETE -- flag6 / bomex
COMPLETE -- flag5 / twp_ice
COMPLETE -- flag6 / atex
COMPLETE -- flag6 / wangara
COMPLETE -- flag6 / gabls3_night
COMPLETE -- flag6 / rico
COMPLETE -- flag4 / lba
COMPLETE -- flag6 / bomex_5day_4scam
COMPLETE -- flag6 / dycoms2_rf02_ds
COMPLETE -- flag7 / arm
COMPLETE -- flag7 / bomex
COMPLETE -- flag6 / dycoms2_rf01
COMPLETE -- flag7 / atex
COMPLETE -- flag6 / twp_ice
COMPLETE -- flag7 / dycoms2_rf01
COMPLETE -- flag7 / wangara
COMPLETE -- flag7 / gabls3_night
COMPLETE -- flag5 / lba
COMPLETE -- flag7 / rico
COMPLETE -- flag7 / bomex_5day_4scam
COMPLETE -- flag8 / arm
COMPLETE -- flag7 / dycoms2_rf02_ds
COMPLETE -- flag8 / bomex
COMPLETE -- flag7 / arm_97
COMPLETE -- flag8 / atex
COMPLETE -- flag8 / wangara
COMPLETE -- flag8 / dycoms2_rf01
COMPLETE -- flag8 / gabls3_night
COMPLETE -- flag8 / rico
COMPLETE -- flag7 / twp_ice
COMPLETE -- flag8 / bomex_5day_4scam
COMPLETE -- flag6 / arm_97
COMPLETE -- flag8 / dycoms2_rf02_ds
COMPLETE -- flag9 / arm
COMPLETE -- flag9 / atex
COMPLETE -- flag9 / bomex
COMPLETE -- flag8 / arm_97
COMPLETE -- flag9 / wangara
COMPLETE -- flag9 / dycoms2_rf01
COMPLETE -- flag8 / twp_ice
COMPLETE -- flag9 / rico
COMPLETE -- flag9 / gabls3_night
COMPLETE -- flag9 / bomex_5day_4scam
COMPLETE -- flag9 / dycoms2_rf02_ds
COMPLETE -- flag7 / lba
COMPLETE -- flag10 / arm
COMPLETE -- flag10 / atex
COMPLETE -- flag9 / arm_97
COMPLETE -- flag10 / bomex
COMPLETE -- flag9 / twp_ice
COMPLETE -- flag6 / lba
COMPLETE -- flag10 / wangara
COMPLETE -- flag10 / dycoms2_rf01
COMPLETE -- flag10 / gabls3_night
COMPLETE -- flag10 / rico
COMPLETE -- flag10 / bomex_5day_4scam
COMPLETE -- flag11 / arm
COMPLETE -- flag10 / dycoms2_rf02_ds
COMPLETE -- flag8 / lba
COMPLETE -- flag11 / bomex
COMPLETE -- flag11 / atex
COMPLETE -- flag10 / arm_97
COMPLETE -- flag11 / wangara
ERROR -- flag11 / arm_97
/home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/output/flag11/arm_97.in
Output directory: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/output/flag11
- using install dir (latest): /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/install/gcc_DEBUG_PRECdouble
- using executable: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/run_scripts/../install/latest/clubb_standalone
=================== Running arm_97 ===================
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 39
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 40
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 41
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 42
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 43
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 44
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 45
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 46
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 47
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 48
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 49
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 50
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 51
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rtm < 0 in Before BUGSrad. at i = 1 and k = 52
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 39
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 40
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 41
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 42
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 43
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 44
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 45
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 46
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 47
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 48
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 49
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 50
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 51
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
rvm < 0 in Before BUGSrad. at i = 1 and k = 52
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
Fatal error in radiation_driver:
Fatal error in CLUBB - MPI Process 1 / Chunk index 1
Column index not available. Latitude/Longitude for column 1: 15.00/-56.50
Latitude range from -90 to 90 degrees, Longitude range from -180 to 180 degrees
Fatal error in radiation, check your parameter values and timestep
Writing timing results to: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/output/flag11/arm_97.timing
Note: The following floating-point exceptions are signalling: IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
ERROR STOP Fatal error in clubb, check your parameter values and timestep
Error termination. Backtrace:
#0 0x403c0e in clubb_standalone
at /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_standalone.F90:69
#1 0x403ccd in main
at /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test/src/clubb_standalone.F90:11
--------------------------------------------------
run_scm.py total runtime: 1.96 s
--------------------------------------------------
COMPLETE -- flag11 / dycoms2_rf01
COMPLETE -- flag11 / gabls3_night
COMPLETE -- flag11 / rico
COMPLETE -- flag10 / twp_ice
COMPLETE -- flag11 / bomex_5day_4scam
COMPLETE -- flag12 / arm
COMPLETE -- flag11 / dycoms2_rf02_ds
COMPLETE -- flag12 / bomex
COMPLETE -- flag12 / atex
COMPLETE -- flag9 / lba
COMPLETE -- flag12 / wangara
COMPLETE -- flag12 / rico
COMPLETE -- flag12 / gabls3_night
COMPLETE -- flag12 / dycoms2_rf01
COMPLETE -- flag11 / twp_ice
COMPLETE -- flag12 / bomex_5day_4scam
COMPLETE -- flag12 / dycoms2_rf02_ds
COMPLETE -- flag13 / arm
COMPLETE -- flag13 / atex
COMPLETE -- flag13 / bomex
COMPLETE -- flag12 / arm_97
COMPLETE -- flag10 / lba
COMPLETE -- flag13 / dycoms2_rf01
COMPLETE -- flag13 / wangara
COMPLETE -- flag13 / rico
COMPLETE -- flag13 / gabls3_night
COMPLETE -- flag12 / twp_ice
COMPLETE -- flag13 / bomex_5day_4scam
COMPLETE -- flag13 / dycoms2_rf02_ds
COMPLETE -- flag14 / arm
COMPLETE -- flag14 / atex
COMPLETE -- flag14 / bomex
COMPLETE -- flag13 / arm_97
COMPLETE -- flag14 / dycoms2_rf01
COMPLETE -- flag11 / lba
COMPLETE -- flag13 / twp_ice
COMPLETE -- flag14 / wangara
COMPLETE -- flag14 / rico
COMPLETE -- flag14 / gabls3_night
COMPLETE -- flag14 / bomex_5day_4scam
COMPLETE -- flag14 / dycoms2_rf02_ds
COMPLETE -- flag15 / arm
COMPLETE -- flag15 / bomex
COMPLETE -- flag15 / atex
COMPLETE -- flag15 / dycoms2_rf01
COMPLETE -- flag14 / arm_97
COMPLETE -- flag12 / lba
COMPLETE -- flag15 / rico
COMPLETE -- flag15 / wangara
COMPLETE -- flag15 / gabls3_night
COMPLETE -- flag14 / twp_ice
COMPLETE -- flag15 / bomex_5day_4scam
COMPLETE -- flag15 / dycoms2_rf02_ds
COMPLETE -- flag16 / arm
COMPLETE -- flag16 / bomex
COMPLETE -- flag16 / atex
COMPLETE -- flag15 / arm_97
COMPLETE -- flag13 / lba
COMPLETE -- flag16 / wangara
COMPLETE -- flag16 / dycoms2_rf01
COMPLETE -- flag16 / rico
COMPLETE -- flag16 / gabls3_night
COMPLETE -- flag15 / twp_ice
COMPLETE -- flag16 / bomex_5day_4scam
COMPLETE -- flag16 / dycoms2_rf02_ds
COMPLETE -- flag17 / arm
COMPLETE -- flag17 / bomex
COMPLETE -- flag17 / atex
COMPLETE -- flag16 / arm_97
COMPLETE -- flag14 / lba
COMPLETE -- flag17 / dycoms2_rf01
COMPLETE -- flag17 / wangara
COMPLETE -- flag17 / gabls3_night
COMPLETE -- flag17 / rico
COMPLETE -- flag16 / twp_ice
COMPLETE -- flag17 / bomex_5day_4scam
COMPLETE -- flag17 / dycoms2_rf02_ds
COMPLETE -- flag18 / arm
COMPLETE -- flag18 / atex
COMPLETE -- flag18 / bomex
COMPLETE -- flag17 / arm_97
COMPLETE -- flag15 / lba
COMPLETE -- flag18 / dycoms2_rf01
COMPLETE -- flag18 / wangara
COMPLETE -- flag17 / twp_ice
COMPLETE -- flag18 / rico
COMPLETE -- flag18 / gabls3_night
COMPLETE -- flag18 / bomex_5day_4scam
COMPLETE -- flag18 / dycoms2_rf02_ds
COMPLETE -- flag18 / arm_97
COMPLETE -- flag16 / lba
COMPLETE -- flag18 / twp_ice
COMPLETE -- flag17 / lba
COMPLETE -- flag18 / lba
=================== Runs Complete ===================
flag11 failures: arm_97
Some CLUBB runs failed. See messages above.
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test
Using /home/jenkins/workspace/clubb_BFB_varying_flags_gfortran_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: none
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_clubb_w_varying_flags.py -min_cases -max_iters=360 -flag_config_file input/flag_sets/run_bindiff_w_flags_config_core_flags.json']
Diffing command: run_scripts/run_bindiff_all.py -flag_sets
=============================== Running Test ===============================
Parsing message from commit: a4826465aeec11af80e51e711d1cc0b8287e96c0
Found: BIT_CHANGING
Parsing message from commit: 89be3d5fd401ed3393a0a251b98752e552010ab9
Parsing message from commit: fbd75c66dc7e14c9dbca7e418c37a679d3de47d3
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Parsing message from commit: b9b446daeae9d0f9adb793b75429898922efac3e
Parsing message from commit: 09639f38d1373114e73ae7fd501310bd7e8f744f
Parsing message from commit: d7b8c3fb8977ea0824c0b8f3aa52a5346c3c92d3
Parsing message from commit: 70c5581b0784cb1117c9a4c0acc1d39be5c9e15c
Parsing message from commit: 01b5fa7cb4bdd981c17405c3d67992080c4b2ca9
Parsing message from commit: 31c332794e716ac7d086ac96c5ae10ce56f55fba
Parsing message from commit: ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3
Parsing message from commit: 5a618af3b1fa969ad22fc01e46db81f7bc71f449
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Parsing message from commit: 9429ba2f18a79e7b17ef53bccc8f17af6649c3fd
Checking Commit: a4826465aeec11af80e51e711d1cc0b8287e96c0
Checking out a4826465aeec11af80e51e711d1cc0b8287e96c0
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_clubb_w_varying_flags.py --min-cases -max_iters=360 --flag-config-file input/flag_sets/run_bindiff_w_flags_config_core_flags.json'
================== ERROR ==================
Commit: a4826465aeec11af80e51e711d1cc0b8287e96c0
Unexpected error: Command 'python run_scripts/run_clubb_w_varying_flags.py --min-cases -max_iters=360 --flag-config-file input/flag_sets/run_bindiff_w_flags_config_core_flags.json' returned non-zero exit status 1.
There was a problem with a run command.
===========================================
System Exit detected. Calling test.cleanup()
=============================== Cleanup ===============================
Removing all generated output
Exiting with code: 1
