Started by an SCM change
Obtained jenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfile from git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Still waiting to schedule task
Waiting for next available executor
Running on <a href='/jenkins/computer/nelson/' class='jenkins-table__link model-link model-link--float'>nelson</a> in /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision f1b6cfe91fd5c120333991b2386dd7e7845ae2e3 (refs/remotes/origin/master)
Commit message: "Removing extra acc end statement"
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f f1b6cfe91fd5c120333991b2386dd7e7845ae2e3 # timeout=10
 &gt; git rev-list --no-walk 4902a5ccf6c0da1bf588ea853aaadbc9a776dfa2 # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Update sys_admin Repo">[Pipeline] { (Update sys_admin Repo)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Python Test">[Pipeline] { (Run Python Test)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7,
netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config
 multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
 Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
 Program exited normally
 multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
 Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
 Program exited normally
 multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
 Warning: ../input/case_setups/bomex_corr_array_cloud.in was not found! The default correlation arrays will be used.
 Program exited normally
 multicol_def namelist not found in clubb.in -- defaulting to ngrdcol = 1
 Warning: ../input/case_setups/dycoms2_rf01_corr_array_cloud.in was not found! The default correlation arrays will be used.
 Program exited normally
Directory 1 is f1b6cfe91fd5c120333991b2386dd7e7845ae2e3
Directory 2 is 4902a5ccf6c0da1bf588ea853aaadbc9a776dfa2
Using reporting threshold:  0.0 


The following cases will be compared: ['bomex', 'dycoms2_rf01']

###DIFFING bomex netCDF (*.nc) files###
&gt;No differences detected by the linux diff in bomex_zm.nc&lt;
&gt;No differences detected by the linux diff in bomex_zt.nc&lt;
&gt;No differences detected by the linux diff in bomex_sfc.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case bomex.&lt;&lt;&lt;
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
&gt;No differences detected by the linux diff in dycoms2_rf01_zm.nc&lt;
&gt;No differences detected by the linux diff in dycoms2_rf01_zt.nc&lt;
&gt;No differences detected by the linux diff in dycoms2_rf01_sfc.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.&lt;&lt;&lt;
**********************************************************************************************************
SUMMARY:
Linux diff did not detect any differences in the compared files.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test

Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>

Output Save Mode: none

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\ncp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters', '\npython run_scripts/run_scm.py bomex', '\npython run_scripts/run_scm.py dycoms2_rf01']

Diffing command: python3 run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 8033a1492b3b2ce6c8d314942d2fba00669188c3
Parsing message from commit: 1c7c6ce6eaba598c7e10dc276e152a825a0642ac
Parsing message from commit: d93dd4e58f75626f8b70b6e631d463aed4ed53fa
Parsing message from commit: ba709f78476c6e1868009855327c1d42cbb90410
Parsing message from commit: ba5dd963b14b0238fc5e8b358390af68a66aa3a0
Parsing message from commit: f1b6cfe91fd5c120333991b2386dd7e7845ae2e3

Checking Commit: 8033a1492b3b2ce6c8d314942d2fba00669188c3
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 1c7c6ce6eaba598c7e10dc276e152a825a0642ac
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: d93dd4e58f75626f8b70b6e631d463aed4ed53fa
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: ba709f78476c6e1868009855327c1d42cbb90410
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: ba5dd963b14b0238fc5e8b358390af68a66aa3a0
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: f1b6cfe91fd5c120333991b2386dd7e7845ae2e3
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out f1b6cfe91fd5c120333991b2386dd7e7845ae2e3
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
	Running: 'python run_scripts/run_scm.py bomex'
	Running: 'python run_scripts/run_scm.py dycoms2_rf01'
	Checking out 4902a5ccf6c0da1bf588ea853aaadbc9a776dfa2
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
	Running: 'python run_scripts/run_scm.py bomex'
	Running: 'python run_scripts/run_scm.py dycoms2_rf01'
	Diffing: 'python3 run_scripts/run_bindiff_all.py f1b6cfe91fd5c120333991b2386dd7e7845ae2e3 4902a5ccf6c0da1bf588ea853aaadbc9a776dfa2'

=============================== Test Results ===============================

Commit Range Checked = 4902a5ccf6c0da1bf588ea853aaadbc9a776dfa2...f1b6cfe91fd5c120333991b2386dd7e7845ae2e3

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: f1b6cfe91fd5c120333991b2386dd7e7845ae2e3

=============================== Cleanup ===============================

Removing all generated output
	REMOVING: 4902a5ccf6c0da1bf588ea853aaadbc9a776dfa2
	REMOVING: f1b6cfe91fd5c120333991b2386dd7e7845ae2e3

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="23" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="24" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="25" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="26" startId="2">[Pipeline] End of Pipeline
</span>Finished: SUCCESS