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JAX (#1351) * Testing new porting shortcut by creating a jax version of advance_xm_wpxp.py - it wen't well. Also updating the porting shortcut with more tips. * Small update to porting shortcut * Iterative improvements to porting shortcut * Using porting script to port advance_xp2_xpyp in one go - still some issues that seems to require rerunning to fix issues, which is sad but maybe the best we can do with such a simple method * Little bug fixes * Updates to make the ports create better jax in the sense that it is more jit-ready * Adding a more general plan to also use CLUBB-JAX and using it on advance_xm_wpxp * Cleanup * More properly jax-izing the current jax ports * More formatting of ported jax code * More formatting of ported jax code * Updates in pursuit of full jit-compatibility * Adding jit compile test * Fully jitting advance_xp2_xpyp * Copying parameter_indices from CLUBB-JAX but subtracting 1 to avoid -1 in code * Little update to port shortcut * Jitting and formatting CLUBB-JAX * Mostly formatting * Updating jax code * Improving stats outputting * Compile mono flux range loops with JAX * Improvement to jax mixing length port * Organizing stats code * Making jax work on GPU * Improvements to prescribe forcings code * Mainly prescribe forcings formatting work * Small improvements, getting rid of unneccesary weird jit statement * Radiation porting completed. Bugsrad and silhs radiation were intentionally left out for now. * Removing stale code and adding a proposal.md file detailing a potential future feature to make the python_api work with current jax code * Proper port of model flags and parameters and constants and such - those there were all kinda put into one file before * new jenkinsfile added * Tiny cleanup and adding back some stats outputs for microphysics that we need for some reason * limited to only one process. Find out built time * made jenkins jax tests faster by running them not so extensively * Mainly working on README, also some other tiny things: changing default test stats list to standard instead of all_stats, and renaming run_jax.sh to run_jax_wrapper.sh --------- Co-authored-by: Daniel Ebel <debel@uwm.edu> 2026-09-02 13:15:01 -050053920ce2095c4b721f59936d5933dd6da8bcb590Clubb JAX 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by an SCM change5682cd63f391364ece6bd63ccffa31f7c4b421ee5312cd63f391364ece6bd63ccffa31f7c4b421ee531refs/remotes/origin/master2cd63f391364ece6bd63ccffa31f7c4b421ee5312cd63f391364ece6bd63ccffa31f7c4b421ee531refs/remotes/origin/master2cd63f391364ece6bd63ccffa31f7c4b421ee5312cd63f391364ece6bd63ccffa31f7c4b421ee531refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#568222106523932clubb_BFB_r8029_flags_gfortran_test #568568false5687815SUCCESS1787992026087http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/568/jenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfile2cd63f391364ece6bd63ccffa31f7c4b421ee5311787963911000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding -debug to branch vs master bindiff test, this is to turn off compiler optimizations that can cause innocent changes to cause tiny differences 2026-08-28 19:38:31 -05002cd63f391364ece6bd63ccffa31f7c4b421ee531Adding -debug to branch vs master bindiff test, this is to turn off compiler optimizations that can cause innocent changes to cause tiny differenceseditjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse569http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/569/567http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/567/