http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/clubb_BFB_r8029_flags_gfortran_testclubb_BFB_r8029_flags_gfortran_testclubb_BFB_r8029_flags_gfortran_testclubb_BFB_r8029_flags_gfortran_testhttp://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/trueStarted by an SCM change000183224822370.99190809080592e92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#59283224107644clubb_BFB_r8029_flags_gfortran_test #592592false59210228SUCCESS1791448030655http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/592/tuner/loss_backend.pytuner/job_runtime.pytuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyjenkins_tests/clubb_tuner/Jenkinsfileclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pydash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyrun_scripts/README.mddash_app/pytests/test_jax_device.pydash_app/shared/activity.pyclubb_jax/run_jax.pydash_app/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pytuner/request.pydash_app/compile_tab/callbacks.pydash_app/shared/actions.pydash_app/shared/jax_device.pyutilities/create_case_namelist.pydash_app/profile_tab/runtime.pydash_app/tune_tab/runtime.pytuner/tune_clubb.pyclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pytuner/tuning_worker.pydash_app/run_tab/runtime.pytuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pytuner/status.pyclubb_jax/backends/cuda.pydash_app/services/models.pydash_app/pytests/test_agent_services.pydash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pydash_app/tune_tab/callbacks_runs.pytuner/tuning_scheduler.pydash_app/DEVELOPMENT.mddash_app/pytests/test_run_broker_simplification.pydash_app/compile_tab/build_selector.pytuner/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyclubb_jax/README.mdrun_scripts/run_tuner_job.py9a1b8b23408d3a5abe78ebae7dd1390755fa4fec1791407526000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUse JAX in tuner (#1383) This makes the JAX work through the new tuner, same sort of way the fortran does. Probably needs a little more testing but seems to be working properly now. * Support reusable JAX driver state and runtime batches * Add standalone JAX loss evaluation and consistency coverage * Keep standalone loss CLI coverage separate from tuning * Integrate JAX with managed tuner jobs and add bounded Jenkins coverage * Remove trailing whitespace from extracted loss CLI tests * Run JAX loss help checks in the JAX pytest suite * Keep JAX lifecycle coverage with native driver tests and document its origins * Document loss test scenarios, native counterparts and JAX extensions * Keep the native loss executable path intact in the test description * Explain managed tuning test ownership and native backend contracts * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Refresh JAX tuner integration for merged loss frontends Use the relocated standalone loss entry point and retain CLI checks only in their shared owner. Give each Jenkins tuning run a separate job directory so repeated builds can succeed. * Record invalid direct tuner requests as terminal errors Let the existing request and launcher error handlers report malformed JSON and non-string JAX options instead of crashing during bootstrap before writing job results. * Preserve winning parameter columns in tuner reruns Retain request physics overrides while excluding initialized values for tuned parameters. Window and full-case reruns now use the winning candidate values, including multiple columns and grouped override names. * Use the selected JAX runtime throughout Dash tuning Persist backend and per-job device settings through native and typed broker requests, saved revisions, continuation and result reruns. Reuse the launcher, shared device controls and rerun override resolver; supervise browser replay processes in the broker. * Allow run IDs in broker replay completion metadata Avoid a selector argument collision that killed the replay watcher before recording terminal state. Preserve run IDs and cancellation metadata while reporting completed jobs accurately. * Keep JAX device setup inside the launcher and backends Expose a standard-library selection interface and forward per-job device and preallocation settings through the SCM and tuner launch paths. Use the same backend configuration for discovery, provenance, and execution; remove GPU environment handling from Dash and the tuner. Validate with Dash/shared suites, focused launcher checks, a CPU tuning and replay workflow, and synthetic two-GPU discovery. * Forward device settings through the existing JAX selection option Extend the launcher-owned -options grammar with device=UUID and prealloc_gpu_mem=true|false, while retaining xla_prealloc compatibility. Remove the transient device-specific options from SCM and tuner scripts so they forward one opaque -jax value. Validate saved settings, discovery and replays through the same public interface; verify CPU tuning metrics remain identical. 2026-10-07 16:12:06 -05009a1b8b23408d3a5abe78ebae7dd1390755fa4fecUse JAX in tuner (#1383)editjenkins_tests/clubb_tuner/Jenkinsfileedittuner/README.mdeditclubb_jax/run_jax.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pyeditdash_app/pytests/test_run_broker_simplification.pyaddtuner/loss_backend.pyedittuner/job_runtime.pyeditdash_app/tune_tab/callbacks_runs.pyeditutilities/create_case_namelist.pyedittuner/tuning_worker.pydeletedash_app/shared/jax_device.pyedittuner/tuning_scheduler.pyeditdash_app/pytests/test_agent_services.pyeditclubb_jax/backends/cuda.pyedittuner/tune_clubb.pyeditdash_app/DEVELOPMENT.mdeditdash_app/run_tab/runtime.pyeditclubb_jax/README.mdeditdash_app/compile_tab/build_selector.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyedittuner/request.pyeditrun_scripts/run_tuner_job.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pyeditdash_app/shared/actions.pyedittuner/status.pyeditdash_app/profile_tab/runtime.pyeditdash_app/pytests/test_jax_device.pyaddtuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyaddtuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pyeditdash_app/services/models.pyadddash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyeditrun_scripts/README.mdadddash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pyeditdash_app/tune_tab/runtime.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pyeditdash_app/README.mdeditdash_app/compile_tab/callbacks.pyeditdash_app/shared/activity.pyrun_scripts/run_tuner.pydash_app/run_tab/tab.pydash_app/persistence.pyutilities/README.md.gitignoredash_app/run_tab/callbacks_selection.pyutilities/case_json_to_namelist.pydash_app/run_tab/layout.pydash_app/pytests/auto_llm_generated_pytests/test_case_editor.pydash_app/README.mdinput/case_setups/case_definitions.jsondash_app/assets/34_case_editor.jsdash_app/shared/actions.pyrun_scripts/run_scm_loss.pyutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pydash_app/run_tab/discovery.pydash_app/assets/12_case_editor.cssdash_app/assets/11_tab_run_theme.cssutilities/create_case_namelist.pytuner/case_defaults.pydash_app/profile_tab/runtime.pyinput/case_setups/READMEdash_app/run_tab/cases.py5f8b57f69c01c59fc3c4457178ae85d57894c1d91791415324000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd JSON case definitions and Dash case editor (#1389) This is mainly a dash update right now, but it adds json versions of our model files. Basically just 2 new files for that - each json stores default values then one entry for each case with overrides it is not default yet and the current system of defining cases is unchanged. * Add JSON case definitions and Dash case editor * Simplify named case lookup and remove queued snapshots * Remove model validation from JSON case conversion 2026-10-07 18:22:04 -05005f8b57f69c01c59fc3c4457178ae85d57894c1d9Add JSON case definitions and Dash case editor (#1389)editdash_app/run_tab/tab.pyadddash_app/assets/34_case_editor.jseditdash_app/run_tab/discovery.pyaddutilities/case_json_to_namelist.pyaddinput/case_setups/case_definitions.jsoneditutilities/create_case_namelist.pyadddash_app/pytests/auto_llm_generated_pytests/test_case_editor.pyedittuner/case_defaults.pyeditdash_app/shared/actions.pyeditdash_app/run_tab/layout.pyeditrun_scripts/run_scm_loss.pyeditdash_app/run_tab/callbacks_selection.pyadddash_app/assets/12_case_editor.csseditrun_scripts/run_tuner.pyeditdash_app/README.mdeditdash_app/assets/11_tab_run_theme.csseditdash_app/persistence.pyeditdash_app/profile_tab/runtime.pyeditutilities/README.mdadddash_app/run_tab/cases.pyeditinput/case_setups/READMEaddutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pyedit.gitignoretests/README.mdjenkins_tests/clubb_stats_output_consistency/Jenkinsfiletests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/run_stats_output_consistency.py166ec211468128c37d8bb4b917ffac337bf802471791416548000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun JAX statistics consistency with an explicit rounding tolerance (#1385) This adds a jax jenkins stage for the statistics consistency test. This is the test that runs clubb with different batches sizes and averaging methods, e.g - start by: run once with 60s output intervals all the way through - test: running with 300s output intervals should give the same stats as manually averaging 5 steps of 60s output - test: outputing only a "window" of stats data (like from timesteps 100-200 instead of whole run), should produce a window idendical to the 60s full output run - test: running 16 columns at once should produce the same as running 16 columns in batches of 4 at a time In fortran these comparisons should be BFB (other than the manually averaging one, which is only close), but in jax, changing things like the batch size can cause optimizations to happen differently, which breaks BFBness and seems to cause differences larger than expected by fortran. For example, the threshold for the manual averaging test in fortran is 1e-12, but for the jax we need 1e-9 even for the batch test. I added a tolerance, `jax_tolerance`, that I left named after jax for now since that is the only current reason that flag exists. This difficulty with jax wasn't unexpected - we also have to compile the fortran with `-O0` to get this test working, also to disable optimizations. There just seems to be less control over how jax does that, so I went with a "relax the tolerance for this specific instance" approach. * Support reusable JAX driver state and runtime batches * Expose JAX in the strict statistics consistency workflow * Keep JAX lifecycle coverage with native driver tests and document its origins * Reference native driver and statistics owners in the JAX test workflow * Keep full Fortran statistics source paths in the test description * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Keep statistics windows within the capped native case duration * Allow explicit JAX statistics tolerance for JIT rounding differences 2026-10-07 18:42:28 -0500166ec211468128c37d8bb4b917ffac337bf80247Run JAX statistics consistency with an explicit rounding tolerance (#1385)edittests/run_stats_output_consistency.pyedittests/README.mdeditjenkins_tests/clubb_stats_output_consistency/Jenkinsfileaddtests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/README.mdtests/run_timestep_tests.pyjenkins_tests/clubb_timestep/Jenkinsfileclubb_jax/README.mdclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pytests/run_timestep_sweep.pytests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.py341cac040a0d352fd5a4da6a5938a86d7d06e3321791417082000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun timestep sweep tests with JAX (#1384) Adding a jax run to the timestep test (now renamed timestep sweep because it's more descriptive). This was really slow on JAX at first - one trick was to add a compilation cache, so that different runs that only use different timesteps didn't need to be recompiled. From my undestanding this is super easy with jax, basically just set `JAX_COMPILATION_CACHE_DIR` to a directory the process can save compiled parts is all it takes, then the compiled parts can live there even after the processes dies, and future ones can reuse it. * Run existing timestep sweeps with the JAX runner * Explain the shared native and JAX timestep sweep behavior * Keep timestep checks aligned with current launcher and CLI conventions Select CPU explicitly in the bounded JAX stage and resolve optional output roots through the shared owner. Support standard single-dash help, reject ambiguous option abbreviations, and cover opaque runtime forwarding while preserving native defaults and exploratory status. Validate with 373 shared checks and four eight-step BOMEX/ATEX runs per backend at 60 and 600 seconds. * Rename the timestep sweep and run shared JAX cases at native defaults Select the 18 cases shared by the native sweep and JAX/Fortran comparison list. Remove Jenkins timestep and iteration overrides, update stage names and documentation, and preserve the sweep's stability-reporting behavior. Validate the selection and rename with 374 shared checks before live branch testing. * Reuse JAX compilations and parallelize case timestep sweeps Keep a backend-specific persistent cache outside the checkout and preserve explicit cache overrides. Run four isolated case sweeps, prioritize measured expensive cases, and print each completed report as a block while preserving timestep order and first-failure semantics. Validate cache reuse across fresh processes and cache clearing, scheduling/overlap/interruption contracts, 379 shared checks, and full 90-run cold-cache JAX/native matrices. 2026-10-07 18:51:22 -0500341cac040a0d352fd5a4da6a5938a86d7d06e332Run timestep sweep tests with JAX (#1384)edittests/README.mddeletetests/run_timestep_tests.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pyeditjenkins_tests/clubb_timestep/Jenkinsfileeditclubb_jax/README.mdeditclubb_jax/run_jax.pyaddtests/run_timestep_sweep.pyaddtests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.pyjenkins_tests/clubb_plots/JenkinsfileLLM_prompts/jenkins_workflow.mde92c2f24486a32610935ff4eede3512c67e313ea1791427833000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdd JAX comparison plots 2026-10-07 21:50:33 -0500e92c2f24486a32610935ff4eede3512c67e313eaAdd JAX comparison plotseditLLM_prompts/jenkins_workflow.mdeditjenkins_tests/clubb_plots/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse591http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/591/Started by an SCM change00011369481359550.9919638963859104ff5df702bc2ad372325353ee19dde5a2fc3fc104ff5df702bc2ad372325353ee19dde5a2fc3fc1refs/remotes/origin/master04ff5df702bc2ad372325353ee19dde5a2fc3fc104ff5df702bc2ad372325353ee19dde5a2fc3fc1refs/remotes/origin/master04ff5df702bc2ad372325353ee19dde5a2fc3fc104ff5df702bc2ad372325353ee19dde5a2fc3fc1refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#591136948107644clubb_BFB_r8029_flags_gfortran_test #591591false59110121SUCCESS1791361630943http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/591/clubb_jax/src/clubb_case_initalization.pyclubb_jax/src/clubb_standalone.pyclubb_jax/src/CLUBB_core/parameters_tunable.pyclubb_jax/src/Input_fields/namelist.pytests/pytests/auto_llm_generated_pytests/test_scm_jax_driver_test.pyclubb_jax/pytests/auto_llm_generated_pytests/test_driver_test_frontend.pyclubb_jax/run_jax.pytests/run_jax_comparison_mutation_test.pyLLM_prompts/jenkins_workflow.mdclubb_jax/tests/run_driver_extensions_test.pyrun_scripts/run_scm.pyclubb_jax/pytests/auto_llm_generated_pytests/test_driver_lifecycle.pyclubb_jax/pytests/auto_llm_generated_pytests/test_driver_error_window.pyjenkins_tests/clubb_driver/Jenkinsfileclubb_jax/src/advance_clubb_to_end.pyclubb_jax/README.mdclubb_jax/src/clubb_driver_test.pyLLM_prompts/pytest_workflow.md56e1502fbdd1be881a4c3ae1a2a9570dfc8615ab1791322777000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comSupport reusable JAX driver initialization and runtime batches (#1380) This is just getting the jax driver to be more in line with fortran. It was lacking features like being able to start/stop at a certain timestep. Certain driver tests were also missing, which got added and included in the driver jenkins test. * Support reusable JAX driver state and runtime batches * Keep JAX lifecycle coverage with native driver tests and document its origins * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading 2026-10-06 16:39:37 -050056e1502fbdd1be881a4c3ae1a2a9570dfc8615abSupport reusable JAX driver initialization and runtime batches (#1380)editLLM_prompts/pytest_workflow.mdeditclubb_jax/run_jax.pyeditclubb_jax/src/Input_fields/namelist.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_driver_test_frontend.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_driver_lifecycle.pyeditclubb_jax/src/clubb_standalone.pyeditrun_scripts/run_scm.pyeditjenkins_tests/clubb_driver/JenkinsfileeditLLM_prompts/jenkins_workflow.mdeditclubb_jax/README.mdeditclubb_jax/src/advance_clubb_to_end.pyeditclubb_jax/src/clubb_case_initalization.pyaddclubb_jax/tests/run_driver_extensions_test.pyaddtests/pytests/auto_llm_generated_pytests/test_scm_jax_driver_test.pyedittests/run_jax_comparison_mutation_test.pyeditclubb_jax/src/CLUBB_core/parameters_tunable.pyaddclubb_jax/src/clubb_driver_test.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_driver_error_window.pytests/README.mdclubb_jax/src/clubb_case_initalization.pyclubb_jax/pytests/auto_llm_generated_pytests/test_restart.pytests/pytests/auto_llm_generated_pytests/test_run_restart_test.pyclubb_jax/pytests/auto_llm_generated_pytests/test_unsupported_config_guards.pyclubb_jax/src/Input_fields/input_fields.pyclubb_jax/README.mdclubb_jax/pytests/auto_llm_generated_pytests/test_restart_input_validation.pyjenkins_tests/clubb_restart/Jenkinsfiletests/run_restart_test.pyclubb_jax/RESTART_PORT_NOTES.md7666fd0f4e1bf2c8c46194dcbaa31fedf8f3c8241791325897000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPort JAX restart initialization and test normal and SILHS continuation (#1381) This makes jax restarts work. Also adding jax restart test stages in the existing jenkins restart test. * Port JAX restart initialization and exercise native and SILHS restarts * Describe restart validation and dependencies for the focused PR * Describe JAX restart scenarios and their native source equivalents * Keep JAX restart validation in the shared harness and exercise distinct columns 2026-10-06 17:31:37 -05007666fd0f4e1bf2c8c46194dcbaa31fedf8f3c824Port JAX restart initialization and test normal and SILHS continuation (#1381)addclubb_jax/pytests/auto_llm_generated_pytests/test_restart.pyaddclubb_jax/src/Input_fields/input_fields.pyeditjenkins_tests/clubb_restart/Jenkinsfileedittests/README.mdeditclubb_jax/src/clubb_case_initalization.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_restart_input_validation.pyaddtests/pytests/auto_llm_generated_pytests/test_run_restart_test.pyeditclubb_jax/README.mdaddclubb_jax/RESTART_PORT_NOTES.mdeditclubb_jax/pytests/auto_llm_generated_pytests/test_unsupported_config_guards.pyedittests/run_restart_test.pyclubb_python_api/tests/clubb_loss_driver_test.pyclubb_python_api/README.mdclubb_jax/run_jax.pytuner/clubb_loss_driver.pytests/README.mdclubb_python_api/pytests/auto_llm_generated_pytests/test_loss_frontend.pyrun_scripts/run_scm_loss.pytuner/pytests/auto_llm_generated_pytests/test_case_window_overrides.pyclubb_jax/tests/test_loss_driver.pyclubb_jax/src/clubb_standalone_loss.pyclubb_jax/pytests/auto_llm_generated_pytests/test_loss_port_structure.pyclubb_python_api/clubb_python/clubb_standalone_loss.pyclubb_python_api/CMakeLists.txttuner/clubb_loss_driver_test.pyutilities/README.mdjenkins_tests/clubb_stats_output_consistency/Jenkinsfileutilities/loss_metrics.pyclubb_jax/src/clubb_loss_driver.pyclubb_jax/TUNER_PORT.mdutilities/pytests/auto_llm_generated_pytests/test_loss_cli.pytests/pytests/auto_llm_generated_pytests/test_run_loss_output_consistency.pyclubb_jax/tests/test_silhs_loss_driver.pyclubb_jax/pytests/auto_llm_generated_pytests/test_loss_driver.pytuner/README.mdclubb_jax/README.mdtuner/case_defaults.pytests/run_loss_output_consistency.py04ff5df702bc2ad372325353ee19dde5a2fc3fc11791344832000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPort standalone JAX loss evaluation and consistency checks (#1382) This adds the capability for the jax to run and compute loss vs les data the same as fortran does. Fortran uses the "loss driver" which does this, and has some additional testing code and a clubb_standalone_loss program that supports that, so this was basically just porting more of the high level fortran code to jax and hooking it up with some of the high level python scripts the tuner uses. * Support reusable JAX driver state and runtime batches * Add standalone JAX loss evaluation and consistency coverage * Keep standalone loss CLI coverage separate from tuning * Remove trailing whitespace from extracted loss CLI tests * Run JAX loss help checks in the JAX pytest suite * Keep JAX lifecycle coverage with native driver tests and document its origins * Document loss test scenarios, native counterparts and JAX extensions * Keep the native loss executable path intact in the test description * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Reject unsupported loss restarts before opening model resources * Clean up merged loss launcher state and document early restart rejection * Move loss frontends and tests out of the tuner package Call the existing Fortran Python API directly from its installed standalone loss frontend, and keep the JAX standalone frontend with its source port. Share unchanged table formatting, relocate lifecycle and CLI coverage, and update runners and documentation. 2026-10-06 22:47:12 -050004ff5df702bc2ad372325353ee19dde5a2fc3fc1Port standalone JAX loss evaluation and consistency checks (#1382)addtuner/pytests/auto_llm_generated_pytests/test_case_window_overrides.pyeditclubb_jax/run_jax.pyaddclubb_jax/tests/test_loss_driver.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_loss_driver.pyaddclubb_jax/src/clubb_loss_driver.pyedittuner/case_defaults.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_loss_port_structure.pyeditjenkins_tests/clubb_stats_output_consistency/Jenkinsfileeditclubb_python_api/README.mddeletetuner/clubb_loss_driver.pyaddclubb_jax/TUNER_PORT.mdaddclubb_python_api/clubb_python/clubb_standalone_loss.pyedittuner/README.mdaddtests/pytests/auto_llm_generated_pytests/test_run_loss_output_consistency.pydeletetuner/clubb_loss_driver_test.pyaddclubb_jax/tests/test_silhs_loss_driver.pyeditclubb_jax/README.mdaddclubb_python_api/pytests/auto_llm_generated_pytests/test_loss_frontend.pyaddutilities/pytests/auto_llm_generated_pytests/test_loss_cli.pyaddclubb_python_api/tests/clubb_loss_driver_test.pyeditrun_scripts/run_scm_loss.pyeditutilities/README.mdaddclubb_jax/src/clubb_standalone_loss.pyeditclubb_python_api/CMakeLists.txtedittests/run_loss_output_consistency.pyeditutilities/loss_metrics.pyedittests/README.mdgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse592http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/592/590http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/Started by user Gunther HueblerhueblerGunther Huebler590350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#590102759107644clubb_BFB_r8029_flags_gfortran_test #590590false59010069SUCCESS1791308898372http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse591http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/591/589http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/589/Started by user Gunther HueblerhueblerGunther Huebler589350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#589787902107644clubb_BFB_r8029_flags_gfortran_test #589589false58910037FAILURE1791306240225http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/589/utilities/convert_acc_to_omp.bashe83e7d62179dd6c710b77216aea55df37600f8201791236009000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFix OpenMP GPU host_data conversion 2026-10-05 16:33:29 -0500e83e7d62179dd6c710b77216aea55df37600f820Fix OpenMP GPU host_data conversioneditutilities/convert_acc_to_omp.bashclubb_jax/backends/cpu.pyclubb_jax/pytests/auto_llm_generated_pytests/test_backends.pyclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pytests/pytests/auto_llm_generated_pytests/test_compile_compiler_selection.pyclubb_jax/pytests/auto_llm_generated_pytests/test_rocm_runtime.pyBUILD.mdclubb_jax/backends/metal.pyclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_portable_cholesky.pyclubb_jax/backends/__init__.pyclubb_jax/backends/rocm.pyclubb_jax/backends/cuda.pyclubb_jax/src/CLUBB_core/matrix_operations.pyclubb_jax/README.mdclubb_jax/requirements-rocm.txtclubb_jax/backends/common.pytests/run_jax_vs_fortran_cases.pycompile.pyclubb_jax/pytests/auto_llm_generated_pytests/test_runtime_info.pyclubb_jax/runtime_info.pyda614f85c180af844a77e80ddd4b61a94ce716b91791238822000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAMD/ROCM Support for Jax (#1376) This does 2 things: adds support for running on ROCM systems, this is the AMD GPU equivalent of cuda organize specific-device backend setup files, e.g GPU on nvidia needs cuda jax libraries, Apple needs metal, AMD needs rocm The only complication was the jax cholesky not working on AMD GPUs. Seems like a bug that's out of our control, so I left en environment flag to switch between the jax linalg call and a custom "portable" one. The portable one still passes the jax_vs_fortran comparison tests. Commits --- * Support native AMD ROCm JAX on CachyOS * Keep ROCm crash fixes and remove Morrison rounding workarounds * Separate JAX launcher and inspection backend policies 2026-10-05 17:20:22 -0500da614f85c180af844a77e80ddd4b61a94ce716b9AMD/ROCM Support for Jax 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orr_mtx_approx.pyclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_utilities.pyclubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_mean.pyclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_moment_integrals.pyclubb_jax/pytests/auto_llm_generated_pytests/test_lba_sfclyr.pyclubb_jax/tests/run_standalone_no_bindings_test.pyclubb_jax/pytests/auto_llm_generated_pytests/test_hydromet_pdf_parameter.pyclubb_jax/pytests/auto_llm_generated_pytests/test_new_pdf.pyclubb_jax/pytests/auto_llm_generated_pytests/test_numerics_autodiff.pyLLM_prompts/pytest_workflow.mdclubb_jax/pytests/auto_llm_generated_pytests/test_adg2_driver.pyclubb_jax/pytests/auto_llm_generated_pytests/test_routine_placement.pyclubb_jax/pytests/auto_llm_generated_pytests/test_calendar.pyclubb_jax/pytests/auto_llm_generated_pytests/test_mean_adv.pyclubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_error_paths.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compute_xp3.pyclubb_jax/pytests/auto_llm_generated_pytests/test_mono_flux_limiter.pyclubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_port_structure.pyclubb_jax/pytests/auto_llm_generated_pytests/test_responder_params.pyclubb_jax/pytests/auto_llm_generated_pytests/test_corr_varnce.pyclubb_jax/pytests/auto_llm_generated_pytests/test_calc_comp_corrs_binormal.pyclubb_jax/pytests/auto_llm_generated_pytests/test_cloud_feedback_sfclyr.pyclubb_jax/pytests/auto_llm_generated_pytests/test_cholesky_factor.pyclubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_autodiff.pyclubb_jax/pytests/auto_llm_generated_pytests/test_advance_helper_extras.pyclubb_jax/pytests/auto_llm_generated_pytests/test_close_luhar_pdf.pyclubb_jax/pytests/auto_llm_generated_pytests/test_saturation.pyclubb_jax/pytests/auto_llm_generated_pytests/test_kk_upscaled_variances.pyclubb_jax/pytests/auto_llm_generated_pytests/test_new_tsdadg_pdf.pyclubb_jax/pytests/auto_llm_generated_pytests/test_set_sfc_value_of_flux_profiles.pyclubb_jax/pytests/auto_llm_generated_pytests/test_coefs_semiimpl.pyclubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_norm_cholesky.pyclubb_jax/pytests/auto_llm_generated_pytests/test_calc_xprcp_component.pyclubb_jax/pytests/auto_llm_generated_pytests/test_trivar_NLL_mean_eq.pyclubb_jax/pytests/auto_llm_generated_pytests/test_stats_writer.pyclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_integrals_all_mm.pyclubb_jax/pytests/auto_llm_generated_pytests/test_new_hybrid_pdf_main.pyclubb_jax/pytests/auto_llm_generated_pytests/test_advance_xp3_simplified.py350a98e42b5a193c8471cc67c288bce95e7f7ac01791244216000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPrune inherited JAX pytests and remove binding dependencies (#1379) This just prunes lots of outdated and unneccesary pytests. These are all LLM generated and I just never went through them before. Probably still needs cleanup. 2026-10-05 18:50:16 -0500350a98e42b5a193c8471cc67c288bce95e7f7ac0Prune inherited JAX pytests and remove binding dependencies (#1379)deleteclubb_jax/pytests/auto_llm_generated_pytests/test_diagnostic_cache.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_liquid_cloud_frac_component.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_penta_solver.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_compute_sigma_sqd_w.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_jit_compile.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_forcing_port_structure.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_set_sfc_value_of_flux_profiles.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_remapping_ppm.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_splatting_autodiff.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_w_hm_n.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_integration.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_silhs_port_structure.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial_rr_Nr.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_mono_flux_limiter.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_new_hybrid_pdf_main.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_pvertinterp.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_cloud_feedback_sfclyr.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_denorm_transform_corr.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_binormal_moments.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_mean_const.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_numerical_check_setters.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_interpolation.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calendar.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_constants.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_compute_rtp2_from_chi.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_rcm_sat_adj.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_upxp.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_index_mapping.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_mixed_moment_pdf_integrals.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_kk_local_means.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_xm_correction_wpxp_cl.pyaddclubb_jax/tests/run_standalone_no_bindings_test.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_smooth_heaviside.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_mean_adv.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_Nc_Ncn_eqns.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_lba_sfclyr.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_coefs_semiimpl.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_component_corr_ip.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_KK_Nrm_tendencies.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_cos_solar_zen.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_comp_mu_sigma_hm.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_compute_uv_tndcy.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_luhar_3d_driver.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_validation_checks.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_cholesky_corr_mtx_approx.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_vs_MM.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_windm_edsclrm_lhs.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_radiation_port_structure.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_quadrivar_NNLL_covar_eq_swap.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_calculate_thvm.pyeditclubb_jax/README.mdeditclubb_jax/pytests/auto_llm_generated_pytests/test_stats_writer.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_comp_corr_norm.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_limits_f_x_responder.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_binormal_moments.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_close_luhar_pdf.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_ly93_pdf.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_max_cubic_root.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_penta_faithful.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_ice_dfsn.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_norm_cholesky.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_rad_extended_atmosphere.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_spurious_source.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_cloud_correlate.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_luhar_params.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_utilities.pyeditclubb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Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse590http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/588http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/588/Started by user Gunther HueblerhueblerGunther Hueblerfalse#5889037107644clubb_BFB_r8029_flags_gfortran_test #588588false5889991FAILURE1791302496338http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/588/false589http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/589/587http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/587/Started by an SCM changefalse#5872616107644clubb_BFB_r8029_flags_gfortran_test #587587false5879905FAILURE1791275227456http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/587/false588http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/588/586http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/586/Started 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#586586false5869801SUCCESS1791188827418http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/586/clubb_jax/AGENTS.mdLLM_prompts/script_cli_conventions.mdLLM_prompts/update_python_api_and_drivers.mdLLM_prompts/jenkins_workflow.mdLLM_prompts/dash_app_workflow.mdLLM_prompts/port_underlying_fortran_to_other_languages.md.agents/skills/clubb-jax-port/SKILL.mdLLM_prompts/numerical_regression_workflow.mdLLM_prompts/README.mdAGENTS.md.agents/skills/clubb-script-cli/SKILL.mdLLM_prompts/SHORTCUTS.mdLLM_prompts/fortran_column_refactor.mdLLM_prompts/update_host_models_after_clubb_changes.mdLLM_prompts/jax_porting_workflow.mdd1c3f80378f8621f388662593c7e5a47f1847b351791138711000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comImprove agent workflow discovery and completion evidence (#1375) This is just a rework of out LLM shortcuts. I had chatgpt go through a bunch of sessions and investigate my inefficiencies in my workflow (like how often I have to ask for corrections for things that were already instructions in these shortcuts), and had it rework our shortcuts. The things done seem to make sense - they're a little shorter and more concise, broken up a bit better, include some extra things. Hard to say if any of it's effective though - hopefully I'll notice an improvement with things 2026-10-04 13:31:51 -0500d1c3f80378f8621f388662593c7e5a47f1847b35Improve agent workflow discovery and completion evidence (#1375)editLLM_prompts/port_underlying_fortran_to_other_languages.mdaddLLM_prompts/script_cli_conventions.mdadd.agents/skills/clubb-script-cli/SKILL.mdaddLLM_prompts/jax_porting_workflow.mdeditLLM_prompts/update_python_api_and_drivers.mdeditLLM_prompts/update_host_models_after_clubb_changes.mdaddLLM_prompts/jenkins_workflow.mdeditAGENTS.mdeditLLM_prompts/dash_app_workflow.mdadd.agents/skills/clubb-jax-port/SKILL.mdaddLLM_prompts/numerical_regression_workflow.mdaddclubb_jax/AGENTS.mdaddLLM_prompts/README.mdeditLLM_prompts/SHORTCUTS.mdaddLLM_prompts/fortran_column_refactor.mdclubb_jax/src/CLUBB_core/precipitation_fraction.pyclubb_jax/src/Microphys/cloud_sed_module.pyclubb_jax/tests/test_microphysics_port_structure.pyclubb_jax/tests/test_silhs_fortran_oracle.pyclubb_jax/tests/test_silhs_sampling.pyclubb_jax/src/Microphys/ice_dfsn_module.pyclubb_jax/src/Microphys/KK_microphys_module.pyclubb_jax/src/SILHS/est_kessler_microphys_module.pyclubb_jax/src/SILHS/latin_hypercube_arrays.pyclubb_jax/src/SILHS/silhs_api_module.pyclubb_jax/src/SILHS/lh_microphys_var_covar_module.pyclubb_jax/src/Microphys/estimate_scm_microphys_module.pyclubb_jax/tests/test_silhs_diagnostics.pyclubb_jax/tests/test_silhs_driver.pyclubb_jax/JAX_CONVERSION_PLAN.mdtests/run_jax_vs_fortran_cases.pyclubb_jax/src/CLUBB_core/fill_holes.pyclubb_jax/src/Input_fields/corr_varnce_input_reader.pyclubb_jax/tests/test_microphysics_error_paths.pyclubb_jax/src/clubb_case_initalization.pysrc/SILHS/latin_hypercube_driver_module.F90clubb_jax/tests/test_microphysics_integration.pyclubb_jax/README.mdclubb_jax/src/SILHS/__init__.pyclubb_jax/src/SILHS/parameters_silhs.pyclubb_jax/src/Microphys/advance_microphys_module.pytests/pytests/test_jax_compare_forwarding.pyclubb_jax/src/CLUBB_core/setup_clubb_pdf_params.pyclubb_jax/src/Microphys/gfdl_activation.pyclubb_jax/src/Microphys/microphys_driver.pyclubb_jax/src/SILHS/latin_hypercube_driver_module.pyclubb_jax/src/CLUBB_core/jax_stats.pyclubb_jax/src/Microphys/lh_microphys_driver_module.pyclubb_jax/src/Microphys/silhs_category_variance_module.pyLLM_prompts/SHORTCUTS.mdclubb_jax/tests/test_silhs_port_structure.pyLLM_prompts/update_host_models_after_clubb_changes.mdclubb_jax/tests/test_microphysics_host_errors.pysrc/SILHS/parameters_silhs.F90clubb_jax/src/Microphys/parameters_microphys.pyclubb_jax/src/SILHS/silhs_importance_sample_module.pyclubb_jax/src/SILHS/math_utilities.pyclubb_jax/src/SILHS/generate_uniform_sample_module.pysrc/Microphys/microphys_init_cleanup.F90clubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.pyclubb_jax/src/Microphys/morrison_microphys_module.pysrc/SILHS/generate_uniform_sample_module.F90clubb_jax/src/Microphys/microphys_init_cleanup.pyclubb_jax/SILHS_PORT_NOTES.mdclubb_jax/src/SILHS/transform_to_pdf_module.pyclubb_jax/src/CLUBB_core/stats_clubb_utilities.pyclubb_jax/src/Microphys/mixed_moment_PDF_integrals.pyclubb_jax/src/advance_clubb_to_end.pyclubb_jax/src/Microphys/coamps_microphys_driver_module.pyf51ab963e7cde71123d3afd8f77d077a35cf211f1791158488000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comJax silhs (#1372) Adding silhs to jax. To avoid randomness issues I added a silhs flag, l_lh_deterministic_test, that causes samples and random numbers to be generated in a deterministic order that is pretty basic but seems like a fine enough sampling method for a test that only matters for comparing jax to fortran matching. This required changing the fortran to have this deterministic test sample generation. I added 3 new silhs tests: rico_silhs with a 60s timestep matches up to 360 timestpes (6 hours) lba_kk_silhs (lba with kk microphys instead of defauly morrison) passes up to 270ish steps, I set test to 240 steps lba_silhs (with morrison) passes <80, from past exploration this seems mainly due to morrison being in single precision * Port SILHS sampling and microphysics coupling to JAX Add native JAX Latin-hypercube sampling with explicit persistent permutation state and case-owned initialization. Couple sampled states to KK and Morrison microphysics in interactive and diagnostic modes, with weighted statistics, substep averaging, and fatal-path/configuration guards. Preserve Fortran routine structure, argument grouping, and source comments throughout SILHS and the microphysics interface layer. Leave Fortran, MT95, and the KK/Morrison numerical cores unchanged. Validation: 103 focused sampling/interface/error-path checks and eight real SILHS driver checks pass. Earlier interface/support validation and the 20-pair disabled-SILHS JAX/Fortran comparison also pass. Enabled SILHS random stream parity is deferred to a future common-random-input comparison. * Add deterministic SILHS comparisons and initialize JAX output grids Add a default-off l_lh_deterministic_test flag to Fortran and JAX. Use ordered strata and a shared four-value, binary-exact draw cycle in the high-level LHS and overlap-pool routines, preserving sequence reuse and leaving the native random generators unchanged. Reject independent importance sampling and random starts in this comparison mode. Add interactive RICO, LBA KK and native LBA Morrison configurations to the JAX/Fortran comparison suite without relaxing the existing tolerances. Initialize SILHS host statistics from JAX case setup so reduced statistics files also contain Fortran's lh_zt and lh_sample_number coordinates. Validation: Fortran build and source checks pass; 581 raw sampling values match exactly; 59 sampler/contract/forwarding checks and 46 output/support checks pass. RICO matches through 360 steps at 60s with standard statistics and with reduced statistics at debug 0. Document the remaining comparison limits: LBA KK's repeating-cycle Nrp2 difference starts at saved prefix 274, while its configured cap remains 275. Native Morrison's selected scope was verified with midpoint inputs; the repeating-cycle comparison was not rerun after the requested stop. * Match Fortran SILHS sampling precision and overlap Preserve default-real rounding in inverse-normal coefficients before promotion to the sample dtype. Apply vertical overlap to starting-level straight Monte Carlo samples and retain source sampling failure status. Add a live Fortran inverse-normal oracle and regressions for overlap and the source sample-count check. Keep comparison limits and tolerances. * Restore SILHS diagnostics and microphysics host error guards Carry weight-limiter and Kessler diagnostic failures through compiled returns and ErrInfo. Preserve Fortran debug guards at the host boundaries so negative-debug tracing can retain per-column failure status. Write ordered microphysics/SILHS settings and approximate correlations from initialization into the standalone setup file. Keep report lifetime and output-name resolution outside the timestep driver. Add focused failure/report regressions and update the port notes with repeating-input comparisons and the native Morrison compiler sensitivity. * Document deterministic SILHS comparison patterns Explain the ordered permutation, repeating within-stratum offsets and overlap pool at every Fortran deterministic randomness override. Mirror the explanation in JAX, including index phases, sequence reuse and independence from RNG state. Executable statements are unchanged in both implementations; source/AST checks confirm these changes only add comments. * Use definition decorators for microphysics JIT boundaries Move the existing PDF preparation, scheme tendency and hydrometeor transport JIT boundaries onto their routine definitions with @partial(jax.jit, ...). Keep the static arguments unchanged and call the source-named routines directly from the standalone driver. Update host injection and source-order checks for the canonical routine names. Lightweight error/feedback fixtures still check eager and compiled routine bodies; real standalone runs exercise the decorated entry points. Validation: 140 focused tests; 28 passed, 2435 warnings in 453.39s (0:07:33); unchanged RICO360/LBAKK275 strict comparisons; supported whole-driver and reverse-mode tracing. * Simplify deterministic SILHS sampling comments Describe the repeatable-testing branches directly, with their base values and index offsets. Show the first twelve pool entries for four columns, grouped by sample, and use the same concise descriptions in the Fortran and JAX mirrors. Only comments and argument documentation change; executable code is unchanged. * Exclude E3SM from host compatibility updates Keep the exclusion visible in shortcut discovery and the host workflow. Treat sys_admin mappings as synchronization metadata, not the active host list. * Shortening tests timesteps a bit and adding a space for niceness 2026-10-04 19:01:28 -0500f51ab963e7cde71123d3afd8f77d077a35cf211fJax silhs (#1372)addclubb_jax/src/SILHS/silhs_importance_sample_module.pyeditclubb_jax/src/Microphys/morrison_microphys_module.pyeditclubb_jax/src/Microphys/gfdl_activation.pyedittests/pytests/test_jax_compare_forwarding.pyaddclubb_jax/src/SILHS/est_kessler_microphys_module.pyeditclubb_jax/src/Microphys/advance_microphys_module.pyeditclubb_jax/src/CLUBB_core/stats_clubb_utilities.pyaddclubb_jax/tests/test_microphysics_host_errors.pyeditclubb_jax/src/Microphys/microphys_driver.pyedittests/run_jax_vs_fortran_cases.pyeditclubb_jax/src/Microphys/estimate_scm_microphys_module.pyeditclubb_jax/src/Microphys/mixed_moment_PDF_integrals.pyaddclubb_jax/tests/test_silhs_port_structure.pyeditclubb_jax/src/CLUBB_core/fill_holes.pyeditclubb_jax/src/Input_fields/corr_varnce_input_reader.pyeditclubb_jax/src/Microphys/lh_microphys_driver_module.pyaddclubb_jax/src/SILHS/math_utilities.pyeditclubb_jax/tests/test_microphysics_port_structure.pyaddclubb_jax/tests/test_silhs_diagnostics.pyeditclubb_jax/src/Microphys/KK_microphys_module.pyeditsrc/SILHS/generate_uniform_sample_module.F90editclubb_jax/src/Microphys/microphys_init_cleanup.pyaddclubb_jax/src/SILHS/generate_uniform_sample_module.pyaddclubb_jax/tests/test_silhs_driver.pyaddclubb_jax/tests/test_silhs_sampling.pyeditclubb_jax/src/Microphys/silhs_category_variance_module.pyeditclubb_jax/src/CLUBB_core/setup_clubb_pdf_params.pyaddclubb_jax/src/SILHS/lh_microphys_var_covar_module.pyeditclubb_jax/JAX_CONVERSION_PLAN.mdeditclubb_jax/tests/test_microphysics_error_paths.pyeditsrc/SILHS/parameters_silhs.F90editclubb_jax/tests/test_microphysics_integration.pyaddclubb_jax/tests/test_silhs_fortran_oracle.pyeditLLM_prompts/update_host_models_after_clubb_changes.mdaddclubb_jax/src/SILHS/__init__.pyaddclubb_jax/src/SILHS/latin_hypercube_driver_module.pyeditclubb_jax/src/CLUBB_core/precipitation_fraction.pyeditclubb_jax/src/Microphys/ice_dfsn_module.pyeditclubb_jax/src/clubb_case_initalization.pyeditclubb_jax/src/CLUBB_core/jax_stats.pyeditsrc/SILHS/latin_hypercube_driver_module.F90editclubb_jax/src/Microphys/coamps_microphys_driver_module.pyaddclubb_jax/src/SILHS/parameters_silhs.pyeditclubb_jax/src/advance_clubb_to_end.pyeditclubb_jax/README.mdeditclubb_jax/src/Microphys/parameters_microphys.pyaddclubb_jax/src/SILHS/silhs_api_module.pyeditclubb_jax/src/Microphys/cloud_sed_module.pyaddclubb_jax/src/SILHS/latin_hypercube_arrays.pyeditLLM_prompts/SHORTCUTS.mdaddclubb_jax/SILHS_PORT_NOTES.mdeditsrc/Microphys/microphys_init_cleanup.F90addclubb_jax/src/SILHS/transform_to_pdf_module.pyeditclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.pyclubb_jax/src/advance_clubb_to_end.pyclubb_jax/SILHS_PORT_NOTES.md9233e347a33c4422eaadde0503786b7f6134ebcf1791167559000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduClarify current SILHS comparison limits Separate current LBA test caps from earlier longer validation runs. Remove trailing spaces from the radiation-call blank line. 2026-10-04 21:32:39 -05009233e347a33c4422eaadde0503786b7f6134ebcfClarify current SILHS comparison 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pytest admission, ownership and Jenkins coverage (#1377) * Organize pytest coverage, generated admission and Jenkins ownership * Tidy moved pytest helper formatting * Isolate native JAX pytest failures and fix migration validation * Prepare Dash CI Node runtime without system npm * Prune incidental UI assertions and clarify required-input failures * Keep pytest promotion paths stable and validate API fixtures * Apply pytest review revisions and consolidate JAX CI * Keep pytest discovery and admission in the runners * Limit Jenkins additions to focused pytest stages * Keep component-specific validation beside Dash and JAX 2026-10-04 22:34:54 -05009afedd80dbc4a1f64989768f1f5124eb03483513Organize pytest admission, ownership and Jenkins coverage 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test cleanup (#1371) * Consolidate and simplify CLUBB branch Jenkins jobs * Parallelize Jenkins workflows and preserve live job scripts * Remove archive metadata from Jenkins scripts * Let pyplotgen choose its own case worker count * Remove retired historical Jenkins tests * Remove superseded standalone Jenkins workflows * Remove completed Jenkins migration records * Resolve JSON overrides in the existing namelist generator * Inline grid overrides with shared defaults and indent Jenkins scripts * Preserve full-case debug coverage in combined Jenkins tests * Separate full-case debug runs from Jenkins compiler matrix 2026-10-02 20:58:16 -050001b5fa7cb4bdd981c17405c3d67992080c4b2ca9Jenkins test cleanup 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Hueblerhuebler@uwm.eduRun Jenkins tuner commands with the project Python environment 2026-10-02 21:24:01 -050031c332794e716ac7d086ac96c5ae10ce56f55fbaRun Jenkins tuner commands with the project Python environmenteditjenkins_tests/clubb_tuner/Jenkinsfilerun_scripts/run_tuner_job.pyjenkins_tests/clubb_tuner/Jenkinsfilerun_scripts/run_scm_loss.pyec38f6a3b0805ee6ac8db48d845ddee0e7d11ac31790994567000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduInitialize the project Python environment in loss and tuner runners 2026-10-02 21:29:27 -0500ec38f6a3b0805ee6ac8db48d845ddee0e7d11ac3Initialize the project Python environment in loss and tuner runnerseditrun_scripts/run_scm_loss.pyeditrun_scripts/run_tuner_job.pyeditjenkins_tests/clubb_tuner/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse585http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/585/583http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/583/Started by an SCM change58370c5581b0784cb1117c9a4c0acc1d39be5c9e15c70c5581b0784cb1117c9a4c0acc1d39be5c9e15crefs/remotes/origin/master70c5581b0784cb1117c9a4c0acc1d39be5c9e15c70c5581b0784cb1117c9a4c0acc1d39be5c9e15crefs/remotes/origin/master70c5581b0784cb1117c9a4c0acc1d39be5c9e15c70c5581b0784cb1117c9a4c0acc1d39be5c9e15crefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#58381068107644clubb_BFB_r8029_flags_gfortran_test #583583false5839266SUCCESS1790929629579http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/583/run_scripts/README.mdrun_scripts/run_bindiff_all.pyd7b8c3fb8977ea0824c0b8f3aa52a5346c3c92d31790897173000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFail bindiff on shape mismatches; optionally reject extra variables (#1370) * Add opt-in strict NetCDF structure checks to bindiff * Fail bindiff comparisons on any shape mismatch * Trim strict bindiff PR scope * Clarify strict bindiff variable matching * Making shape mismatches only a warning by default again - this is in case someone wants to change how metadata is stored in the netcdf. For example, new parameter is added to clubb_params, now the netcdf storage for clubb_params is 1 element bigger and the python will detect the sizes are not comparable (shape error) - we don't want this to cause this bindiff script to fail. 2026-10-01 18:26:13 -0500d7b8c3fb8977ea0824c0b8f3aa52a5346c3c92d3Fail bindiff on shape mismatches; optionally reject extra variables (#1370)editrun_scripts/run_bindiff_all.pyeditrun_scripts/README.mdclubb_jax/src/Microphys/KK_microphys/parameters_KK.pyclubb_jax/tests/test_hydrometeor_mixed_moments.pyrun_scripts/README.mdclubb_jax/src/CLUBB_core/precipitation_fraction.pyclubb_jax/src/Microphys/cloud_sed_module.pytests/pytests/test_bindiff_report.pyclubb_jax/tests/test_microphysics_port_structure.pyclubb_jax/src/Microphys/ice_dfsn_module.pyclubb_jax/src/Microphys/KK_microphys_module.pyclubb_jax/src/Microphys/KK_microphys/PDF_integrals_means.pytests/README.mdclubb_jax/tests/test_component_precip_frac_specify.pyclubb_jax/tests/test_morrison_special.pyclubb_jax/tests/test_kk_covariance_batch.pyclubb_jax/tests/microphysics_coefficients.pyclubb_jax/src/Microphys/KK_microphys/PDF_integrals_covar.pyclubb_jax/src/Microphys/morrison_microphys_step.pyclubb_jax/src/Microphys/KK_microphys/covariance_dv.pyclubb_jax/src/Benchmark_cases/lba.pyclubb_jax/src/Microphys/estimate_scm_microphys_module.pytests/run_jax_vs_fortran_cases.pyclubb_jax/src/CLUBB_core/fill_holes.pyclubb_jax/tests/test_unsupported_config_guards.pyclubb_jax/src/clubb_case_initalization.pyclubb_jax/src/Input_fields/corr_varnce_input_reader.pyclubb_jax/tests/test_microphysics_error_paths.pyclubb_jax/src/Microphys/KK_microphys/parabolic_cylinder.pyclubb_jax/tests/test_microphysics_integration.pyclubb_jax/tests/test_differentiability.pyclubb_jax/src/Benchmark_cases/prescribe_forcings.pyclubb_jax/tests/test_kk_autoconversion.pyclubb_jax/tests/test_jax_cli_options.pytests/run_python_vs_fortran_cases.pyclubb_jax/README.mdinput/flag_sets/README.mdclubb_jax/tests/test_stats_output_time.pyclubb_jax/tests/test_lba_sfclyr.pyclubb_jax/tests/microphysics_test_inputs.pyclubb_jax/src/Microphys/advance_microphys_module.pytests/pytests/test_jax_compare_forwarding.pyclubb_jax/src/Microphys/KK_microphys/KK_upscaled_covariances.pyclubb_jax/src/Microphys/Morrison_microphys/__init__.pyclubb_jax/src/CLUBB_core/setup_clubb_pdf_params.pyclubb_jax/src/Microphys/gfdl_activation.pyclubb_jax/run_jax.pyclubb_jax/src/Microphys/microphys_driver.pytests/run_jax_comparison_mutation_test.pyclubb_jax/src/Microphys/lh_microphys_driver_module.pyclubb_jax/src/Benchmark_cases/clex9_oct14.pyclubb_jax/src/Microphys/silhs_category_variance_module.pyclubb_jax/tests/test_cloud_drop_sed.pyjenkins_tests/clubb_jax_tests/Jenkinsfileclubb_jax/src/Radiation/parameters_radiation.pyclubb_jax/tests/test_kk_rico_oracle.pyclubb_jax/tests/test_morrison_differentiable.pyclubb_jax/src/Microphys/KK_microphys/KK_upscaled_turbulent_sed.pyclubb_jax/src/Microphys/KK_microphys/kk_microphys_driver.pyclubb_jax/src/Microphys/parameters_microphys.pyLLM_prompts/update_python_api_and_drivers.mdclubb_jax/src/Microphys/KK_microphys/KK_Nrm_tendencies.pyclubb_jax/src/Microphys/Morrison_microphys/module_mp_graupel.pyclubb_jax/tests/test_forcing_port_structure.pyclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.pyclubb_jax/tests/test_ice_dfsn.pyclubb_jax/src/Microphys/morrison_microphys_module.pyrun_scripts/run_bindiff_all.pyclubb_jax/src/Microphys/KK_microphys/KK_upscaled_means.pyclubb_jax/src/Microphys/microphys_init_cleanup.pyclubb_jax/tests/test_morrison_rates.pyclubb_jax/src/CLUBB_core/stats_clubb_utilities.pyclubb_jax/src/Microphys/mixed_moment_PDF_integrals.pyclubb_jax/src/advance_clubb_to_end.pyclubb_jax/tests/test_gfdl_activation.pyclubb_jax/src/Microphys/coamps_microphys_driver_module.pyclubb_jax/src/Microphys/kk_microphys_step.py70c5581b0784cb1117c9a4c0acc1d39be5c9e15c1790913575000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdding Microhpysics to JAX (#1362) * Enable JAX microphysics with Fortran-shaped interfaces Connect KK and Morrison cores through microphysics initialization, PDF preparation, transport, sedimentation, statistics, and delayed feedback. Retain explicit guards and dummy interfaces for unsupported features. Add DYCOMS2 RF02 DS to the JAX-versus-Fortran harness at 240 timesteps. The four-column CPU double comparison passes at the existing 1e-7 threshold. Morrison validation remains limited to synthetic interface checks. * Add RICO and LBA KK microphysics comparisons Configure per-case timestep limits, timesteps and namelist overrides in the JAX-versus-Fortran harness. Add RICO at 380 steps of 60 seconds and the LBA warm-rain KK variant for its full 360-step, six-hour duration. Match Fortran multicolumn hydrometeor hole-filling grid metrics, keep lazy KK module constants outside JAX tracing, resolve LBA radiation tables from the configured forcing path, and use the source LBA surface-flux pi constant. Update the existing surface-flux expectation and document coverage. Validation: serial live comparisons pass for RICO 380, DYCOMS2 RF02 DS 240, and LBA 360 at the unchanged 1e-7 thresholds with four columns and standard statistics. All LBA prefixes and its comparison against release O2 pass. Focused checks: 72 RICO/integration checks and 51 LBA/radiation checks pass. * Replace draft JAX Morrison core with source-transcribed physics Restore Morrison process assembly, sedimentation, corrections and diagnostics with source float32 state and native arithmetic. Consolidate the implementation in module_mp_graupel.py, align public routine boundaries with Fortran, and remove unused draft helpers and their tests. Fix column snow integration and conversion of accumulated fallout to precipitation rates. Add the lba_morrison strict startup case (60 steps at the unchanged 1e-7 threshold) and isolate named variants' output directories. Update support documentation. Validation: fresh serial LBA Morrison strict comparison passes; 42 focused physics/interface checks pass. A separate six-hour, eight-column replay matches all 25 pre-cleanup NetCDF variables exactly. Active ice/graupel validation remains outstanding. Experimental ensemble tooling and investigation files are excluded. * Little script/readme cleanup * Little fixes for morrison code and adding morrison cases to jax_vs_fortran test, but with a short number of iterations since morrison is hard to compare (mainly because it's in single precision and that seems to hugely amplify floating-point error to be larger than our correctness tolerance that our test uses). * Batching KK parabolic cylinder calls - this results in far less memory consumed because it's a big function and was called hundreds of times each timestep, and that consumes lots of memory because the jit step inlines each of those calls. Batching them allows us to compute them all in pretty much the same place with far less inlining. Also improving the jax_vs_fortran scripts handling of multiple processes - now it exits out correctly when using ctrl-c * Little fix to prevent divergence in some fields with kk microphysics. * Simplify JAX comparison CLI and reporting * Adding a test, run_jax_comparison_mutation_test.py, that injects little code errors into the jax and runs the jax_vs_fortran script to ensure it fails. * Little formatting changes * Improving comment * Update to the json return option from the runbindiff - clearer explaination and more functionality, making other scripts make use of it too * Improving readme a bit * Improving the jax_vs_fortran failure test by adding a case that tests what happens when a stat value is output by one file but not the other 2026-10-01 22:59:35 -050070c5581b0784cb1117c9a4c0acc1d39be5c9e15cAdding Microhpysics to JAX (#1362)editrun_scripts/README.mdaddtests/pytests/test_bindiff_report.pyeditclubb_jax/README.mdaddclubb_jax/src/Benchmark_cases/clex9_oct14.pyeditclubb_jax/src/Microphys/KK_microphys_module.pyeditclubb_jax/tests/test_forcing_port_structure.pyaddclubb_jax/tests/microphysics_test_inputs.pyeditclubb_jax/src/Microphys/KK_microphys/PDF_integrals_means.pyeditclubb_jax/tests/test_differentiability.pyeditclubb_jax/src/Radiation/parameters_radiation.pyaddclubb_jax/tests/test_microphysics_port_structure.pyeditclubb_jax/tests/test_kk_autoconversion.pyeditclubb_jax/tests/test_lba_sfclyr.pyaddclubb_jax/tests/microphysics_coefficients.pyeditclubb_jax/tests/test_component_precip_frac_specify.pyeditclubb_jax/src/Benchmark_cases/lba.pyeditclubb_jax/src/Microphys/KK_microphys/parabolic_cylinder.pyeditclubb_jax/run_jax.pyeditclubb_jax/src/Microphys/KK_microphys/KK_Nrm_tendencies.pyedittests/run_jax_vs_fortran_cases.pyeditclubb_jax/tests/test_cloud_drop_sed.pyaddclubb_jax/src/Microphys/pdf_hydromet_microphys_wrapper.pyeditclubb_jax/src/Microphys/KK_microphys/parameters_KK.pyaddtests/pytests/test_jax_compare_forwarding.pyaddtests/run_jax_comparison_mutation_test.pyeditclubb_jax/src/CLUBB_core/fill_holes.pyeditjenkins_tests/clubb_jax_tests/Jenkinsfileeditclubb_jax/tests/test_gfdl_activation.pyeditclubb_jax/tests/test_unsupported_config_guards.pyaddclubb_jax/src/Microphys/estimate_scm_microphys_module.pyeditclubb_jax/src/Microphys/morrison_microphys_module.pyaddclubb_jax/src/Microphys/silhs_category_variance_module.pyeditclubb_jax/src/Microphys/mixed_moment_PDF_integrals.pyeditclubb_jax/src/CLUBB_core/precipitation_fraction.pyaddclubb_jax/src/Microphys/lh_microphys_driver_module.pyeditclubb_jax/tests/test_jax_cli_options.pyeditclubb_jax/src/clubb_case_initalization.pyeditclubb_jax/src/Microphys/KK_microphys/KK_upscaled_covariances.pyeditclubb_jax/src/Microphys/microphys_driver.pyeditclubb_jax/tests/test_morrison_special.pyeditclubb_jax/src/Microphys/ice_dfsn_module.pyeditclubb_jax/src/Microphys/advance_microphys_module.pydeleteclubb_jax/src/Microphys/kk_microphys_step.pyaddclubb_jax/tests/test_kk_covariance_batch.pydeleteclubb_jax/tests/test_morrison_differentiable.pyeditclubb_jax/src/Microphys/Morrison_microphys/module_mp_graupel.pyeditclubb_jax/tests/test_hydrometeor_mixed_moments.pyeditclubb_jax/src/Benchmark_cases/prescribe_forcings.pyaddclubb_jax/src/Input_fields/corr_varnce_input_reader.pyeditclubb_jax/src/Microphys/gfdl_activation.pyedittests/run_python_vs_fortran_cases.pyeditclubb_jax/src/Microphys/Morrison_microphys/__init__.pyeditLLM_prompts/update_python_api_and_drivers.mdeditclubb_jax/src/advance_clubb_to_end.pyeditclubb_jax/tests/test_kk_rico_oracle.pyeditclubb_jax/src/CLUBB_core/setup_clubb_pdf_params.pyaddclubb_jax/src/Microphys/KK_microphys/covariance_dv.pyeditclubb_jax/src/Microphys/cloud_sed_module.pyeditclubb_jax/src/Microphys/KK_microphys/KK_upscaled_turbulent_sed.pyaddclubb_jax/tests/test_microphysics_error_paths.pyaddclubb_jax/src/Microphys/microphys_init_cleanup.pyaddclubb_jax/tests/test_microphysics_integration.pyeditclubb_jax/src/CLUBB_core/stats_clubb_utilities.pyeditclubb_jax/src/Microphys/KK_microphys/KK_upscaled_means.pyaddclubb_jax/src/Microphys/parameters_microphys.pyeditclubb_jax/src/Microphys/KK_microphys/PDF_integrals_covar.pyeditclubb_jax/tests/test_ice_dfsn.pyeditclubb_jax/tests/test_stats_output_time.pyeditinput/flag_sets/README.mddeleteclubb_jax/src/Microphys/morrison_microphys_step.pyaddclubb_jax/src/Microphys/coamps_microphys_driver_module.pydeleteclubb_jax/tests/test_morrison_rates.pydeleteclubb_jax/src/Microphys/KK_microphys/kk_microphys_driver.pyedittests/README.mdeditrun_scripts/run_bindiff_all.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse584http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/584/582http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/582/Started by user Gunther HueblerhueblerGunther Huebler58209639f38d1373114e73ae7fd501310bd7e8f744f09639f38d1373114e73ae7fd501310bd7e8f744frefs/remotes/origin/master09639f38d1373114e73ae7fd501310bd7e8f744f09639f38d1373114e73ae7fd501310bd7e8f744frefs/remotes/origin/master09639f38d1373114e73ae7fd501310bd7e8f744f09639f38d1373114e73ae7fd501310bd7e8f744frefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#582176793107644clubb_BFB_r8029_flags_gfortran_test #582582false5829210SUCCESS1790881194441http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/582/http://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse583http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/583/581http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/581/Started by an SCM 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#581581false5819132FAILURE1790843323421http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/581/experimental/experimental_pdfs/python/report_scripts/directional_lscale_pdf_coherence/generate_report.pydoc/reports/resize_raster_assets.pydoc/reports/README.mdclubb_python_api/README.mdtuner/clubb_loss_driver.pytests/run_clubb_conv_test.pyrun_scripts/run_scm_loss.pytests/check_budget_balance.pytests/run_loss_metrics_test.pylaunch_dashboard.shtests/READMEtuner/clubb_loss_driver_test.pyclubb_python_api/tests/conftest.pytuner/tune_clubb.pypostprocessing/check_budgets_balance/checkBudget.pytests/run_thread_test.pyclubb_python_driver/__init__.pytests/check_mirrored_multi_col_output.pypostprocessing/pyplotgen/requirements.txtpostprocessing/pyplotgen/README.mdrun_scripts/convergence_run/convergence_config.pypostprocessing/pyplotgen/pyplotgen.pytests/run_clubb_settings_validation_test.pytests/run_python_vs_fortran_cases.pydash_app/agent_integration/mcp_server.pydash_app/requirements.txttests/run_restart_test.pytests/run_loss_output_consistency.py.gitignoredash_app/README.mdtests/run_pytests.shclubb_python_driver/clubb_standalone.pyutilities/benchmark_converter.pytests/run_benchmark_converter_test.pyclubb_python_api/run_pytests.shutilities/split_stats_to_legacy.pyrun_scripts/run_clubb_and_pyplotgen.pytests/run_stats_output_consistency.pycompile.pyrun_scripts/convergence_run/convergence_function.pyutilities/setup_python_venv.pyBUILD.mdclubb_python_api/requirements.txttests/run_silhs_test.pytests/analyze_tuner_sample_history.pyrun_scripts/convergence_run/plot_l2_convergence.pyrun_scripts/run_scm.pyrun_scripts/run_bindiff_all.pyutilities/create_multi_col_params.pyREADMEdash_app/pytests/test_scm_override.pyfbd75c66dc7e14c9dbca7e418c37a679d3de47d31790791702000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comVenv improvement (#1367) * Unify Python environment setup with uv Add optional shared Python/F2PY setup and automatic Dash dependency installation. Keep JAX independent, preserve ordinary system-Python use, and update compile selection behavior for CLI and Dash. * Harden shared Python environment and F2PY runtime selection * Bootstrap shared Python environment from entry points * Move install alias behavior to symlink branch 2026-09-30 13:08:22 -0500fbd75c66dc7e14c9dbca7e418c37a679d3de47d3Venv improvement (#1367)edittests/check_mirrored_multi_col_output.pyeditutilities/create_multi_col_params.pyeditdoc/reports/resize_raster_assets.pyeditdash_app/requirements.txteditclubb_python_api/README.mdeditdash_app/pytests/test_scm_override.pyedittuner/clubb_loss_driver_test.pyaddutilities/setup_python_venv.pyeditrun_scripts/run_scm_loss.pyedittests/run_loss_metrics_test.pyeditcompile.pyeditdash_app/README.mdedittests/run_silhs_test.pyedittuner/clubb_loss_driver.pyeditBUILD.mdeditexperimental/experimental_pdfs/python/report_scripts/directional_lscale_pdf_coherence/generate_report.pyedittests/check_budget_balance.pyeditpostprocessing/pyplotgen/pyplotgen.pyeditrun_scripts/run_bindiff_all.pyeditrun_scripts/convergence_run/plot_l2_convergence.pyedittests/run_pytests.shedittests/run_thread_test.pyeditREADMEeditrun_scripts/run_scm.pyeditutilities/benchmark_converter.pyeditpostprocessing/pyplotgen/README.mdedit.gitignoreedittests/run_benchmark_converter_test.pyeditpostprocessing/pyplotgen/requirements.txtedittests/run_clubb_conv_test.pyeditutilities/split_stats_to_legacy.pyeditclubb_python_api/requirements.txtedittests/run_loss_output_consistency.pyedittests/run_stats_output_consistency.pyeditdash_app/agent_integration/mcp_server.pyeditclubb_python_driver/clubb_standalone.pyeditclubb_python_api/tests/conftest.pyeditpostprocessing/check_budgets_balance/checkBudget.pyeditclubb_python_driver/__init__.pyeditrun_scripts/convergence_run/convergence_config.pyeditdoc/reports/README.mdeditrun_scripts/convergence_run/convergence_function.pyedittests/READMEedittests/run_restart_test.pyeditrun_scripts/run_clubb_and_pyplotgen.pyedittuner/tune_clubb.pyedittests/run_clubb_settings_validation_test.pyeditclubb_python_api/run_pytests.shedittests/run_python_vs_fortran_cases.pyeditlaunch_dashboard.shedittests/analyze_tuner_sample_history.pytests/pytests/test_compile_install_aliases.pyBUILD.mddash_app/compile_tab/runtime.pycompile.pydash_app/pytests/test_compile_tab_build_status.pyf5f8f9cb615e396a1a9913fe3b9470c63df935951790792854000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate selected install with command-line builds (#1369) 2026-09-30 13:27:34 -0500f5f8f9cb615e396a1a9913fe3b9470c63df93595Update selected install with command-line builds (#1369)editdash_app/compile_tab/runtime.pyaddtests/pytests/test_compile_install_aliases.pyeditcompile.pyeditBUILD.mdeditdash_app/pytests/test_compile_tab_build_status.pytests/README.mdtests/READMEb9b446daeae9d0f9adb793b75429898922efac3e1790792931000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking README a README.md 2026-09-30 13:28:51 -0500b9b446daeae9d0f9adb793b75429898922efac3eMaking README a README.mdaddtests/README.mddeletetests/READMEclubb_jax/src/clubb_case_initalization.pysrc/CLUBB_core/parameters_tunable.F90src/G_unit_test_types/spurious_source_test.F90clubb_python_api/clubb_python/clubb_api.pyclubb_python_api/tests/test_init_sequence.pyclubb_python_api/f2py_fortran_wrappers/parameters_tunable_wrapper.F90experimental/experimental_pdfs/python/dash_additions/misc_labs/sam_lscale.pyclubb_jax/src/CLUBB_core/parameters_tunable.pyclubb_python_api/tests/test_udt_return_contract.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyclubb_python_driver/clubb_case_initalization.pyclubb_python_api/tests/test_advance_core_subs.pysrc/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90clubb_jax/tests/test_param_names.pyclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_jax/src/CLUBB_core/new_tsdadg_pdf.pyclubb_python_api/tests/test_call_tree_advance_core.pysrc/G_unit_test_types/rev_direction_grid_test.F90clubb_python_api/tests/test_call_tree_advance_xm_wpxp.py09639f38d1373114e73ae7fd501310bd7e8f744f1790794987000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRename derived-parameter routine across CLUBB interfaces 2026-09-30 14:03:07 -050009639f38d1373114e73ae7fd501310bd7e8f744fRename derived-parameter routine across CLUBB interfaceseditclubb_python_api/tests/test_init_sequence.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditsrc/CLUBB_core/clubb_api_module.F90editclubb_jax/src/CLUBB_core/parameters_tunable.pyeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_driver/clubb_case_initalization.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditclubb_jax/src/clubb_case_initalization.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/f2py_fortran_wrappers/parameters_tunable_wrapper.F90editclubb_jax/tests/test_param_names.pyeditexperimental/experimental_pdfs/python/dash_additions/misc_labs/sam_lscale.pyeditsrc/G_unit_test_types/rev_direction_grid_test.F90editclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/tests/test_udt_return_contract.pyeditsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/parameters_tunable.F90editsrc/clubb_driver.F90editclubb_jax/src/CLUBB_core/new_tsdadg_pdf.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyeditclubb_python_api/tests/test_call_tree_advance_core.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse582http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/582/580http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/580/Started by an SCM change58089be3d5fd401ed3393a0a251b98752e552010ab989be3d5fd401ed3393a0a251b98752e552010ab9refs/remotes/origin/master89be3d5fd401ed3393a0a251b98752e552010ab989be3d5fd401ed3393a0a251b98752e552010ab9refs/remotes/origin/master89be3d5fd401ed3393a0a251b98752e552010ab989be3d5fd401ed3393a0a251b98752e552010ab9refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#580751946107644clubb_BFB_r8029_flags_gfortran_test #580580false5808988SUCCESS1790670427236http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/580/clubb_jax/src/CLUBB_core/precipitation_fraction.pysrc/CLUBB_core/precipitation_fraction.F90a4826465aeec11af80e51e711d1cc0b8287e96c01790609573000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove upsilon 0 and 1 if branches (#1365) * Removed unnecessary upsilon_precip_frac_rat == 0 or 1 checks The read in parameter upsilon_precip_frac_rat is set in .in files. upsilon_precip_frac_rat describes the precipitation ratio between the first and second PDF component. The edge cases, all perticipitation in one PDF (upsilon=0 or 1) had their own if branches. These edge case branches are not strictly necessary as upsilon should never be set to 0 or 1 and we can live with a tiny precipitation fraction of precip_frac_tol in such a case. Furthermore a logic error was present which would never execute the if branch for the upsilon=0 case anyway. Per default upsilon is not set to 0 and afaik is not tested in the jenkins tests. However if upsilon is read in as 0 or 1 this commit would be technically BIT_CHANGING. A mirrored code removal in clubb-jax was also done. * changed comment about role of upsilon a bit 2026-09-28 10:32:53 -0500a4826465aeec11af80e51e711d1cc0b8287e96c0Remove upsilon 0 and 1 if branches (#1365)editclubb_jax/src/CLUBB_core/precipitation_fraction.pyeditsrc/CLUBB_core/precipitation_fraction.F90jenkins_tests/clubb_restart_multicol_gfortran_test/Jenkinsfilesrc/clubb_driver.F90tests/run_restart_test.pyjenkins_tests/clubb_restart_gfortran_test/Jenkinsfile89be3d5fd401ed3393a0a251b98752e552010ab91790614619000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRestart clubb 2d arr slicing fix (#1366) * Fixed 2d arr passing into restart_clubb subroutine which expects a 1d arr This only affects behaviour upon clubb restarts. Because restarts are more of a debug feature and disabled in all current "..._model.in" files I don't see the necessity to mark with bit changing. * Added multicol support to restart tests script Forwarding any extra cli options to the run_scm.py script which run_restart.py calls. E.g. -multicol * Changed the bomex jenkins restart test to run with multicol. Changed the jenkins test name 2026-09-28 11:56:59 -050089be3d5fd401ed3393a0a251b98752e552010ab9Restart clubb 2d arr slicing fix (#1366)addjenkins_tests/clubb_restart_multicol_gfortran_test/Jenkinsfileeditsrc/clubb_driver.F90edittests/run_restart_test.pydeletejenkins_tests/clubb_restart_gfortran_test/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse581http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/581/579http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/579/Started by an SCM change5798f4f60104e839514cc8fa69801bebe0d1e26dfbb8f4f60104e839514cc8fa69801bebe0d1e26dfbbrefs/remotes/origin/master8f4f60104e839514cc8fa69801bebe0d1e26dfbb8f4f60104e839514cc8fa69801bebe0d1e26dfbbrefs/remotes/origin/master8f4f60104e839514cc8fa69801bebe0d1e26dfbb8f4f60104e839514cc8fa69801bebe0d1e26dfbbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#579260625107644clubb_BFB_r8029_flags_gfortran_test #579579false5798881SUCCESS1790324829093http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/579/tuner/request.pyutilities/check_scripts/check_exponents.pyutilities/README.mdtuner/parameter_ranges.pyutilities/check_scripts/check_uninitialized_output_variables.pyutilities/clubb_settings_validation.pyutilities/pytests/test_settings_rules.pyutilities/READMEtests/run_clubb_settings_validation_test.pyutilities/check_for_errors.pyutilities/pytests/test_clubb_settings_resolution.py8f4f60104e839514cc8fa69801bebe0d1e26dfbb1790261625000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comlil cleanup without directory refactoring done (#1364) * lil utilities dir cleanup without directory refactoring * Rename utilities/README to utilities/README.md Pure rename with no content change, so git and GitHub detect it as a rename rather than a delete plus create. -> Did not work * added gh links in readme 2026-09-24 09:53:45 -05008f4f60104e839514cc8fa69801bebe0d1e26dfbblil cleanup without directory refactoring done (#1364)edittuner/request.pyaddutilities/README.mdeditutilities/check_scripts/check_exponents.pyeditutilities/pytests/test_clubb_settings_resolution.pyeditutilities/clubb_settings_validation.pyedittuner/parameter_ranges.pyeditutilities/check_scripts/check_uninitialized_output_variables.pyedittests/run_clubb_settings_validation_test.pyeditutilities/check_for_errors.pydeleteutilities/READMEeditutilities/pytests/test_settings_rules.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse580http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/580/578http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/578/Started by an SCM change5788b60ee73f5faaa22d874985220f1bbaf9e2cc10f8b60ee73f5faaa22d874985220f1bbaf9e2cc10frefs/remotes/origin/master8b60ee73f5faaa22d874985220f1bbaf9e2cc10f8b60ee73f5faaa22d874985220f1bbaf9e2cc10frefs/remotes/origin/master8b60ee73f5faaa22d874985220f1bbaf9e2cc10f8b60ee73f5faaa22d874985220f1bbaf9e2cc10frefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#578185942107644clubb_BFB_r8029_flags_gfortran_test #578578false5788805SUCCESS1790238427125http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/578/jenkins_tests/clubb_jax_tests/Jenkinsfile8b60ee73f5faaa22d874985220f1bbaf9e2cc10f1790198131000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding a stage in the jax test to just do a basic run with standard_stats 2026-09-23 16:15:31 -05008b60ee73f5faaa22d874985220f1bbaf9e2cc10fAdding a stage in the jax test to just do a basic run with standard_statseditjenkins_tests/clubb_jax_tests/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse579http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/579/577http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/577/Started by an SCM change577bc8d70735e710ef36f81e42f58843908ae3ddcbcbc8d70735e710ef36f81e42f58843908ae3ddcbcrefs/remotes/origin/masterbc8d70735e710ef36f81e42f58843908ae3ddcbcbc8d70735e710ef36f81e42f58843908ae3ddcbcrefs/remotes/origin/masterbc8d70735e710ef36f81e42f58843908ae3ddcbcbc8d70735e710ef36f81e42f58843908ae3ddcbcrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5771876311107644clubb_BFB_r8029_flags_gfortran_test #577577false5778714SUCCESS1790152028906http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/577/src/clubb_driver.F90src/Benchmark_cases/time_dependent_input.F90src/CLUBB_core/remapping_module.F90src/Benchmark_cases/atex.F90src/Benchmark_cases/prescribe_forcings.F90eb20e0988129b0a57d5df04a39b5c4a965e2397f1790093259000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comF90 fix multicol+l add dycore grid (#1363) fixed 2d array passing into 1d array fns. Technically BIT_CHANGING for multicol 2026-09-22 11:07:39 -0500eb20e0988129b0a57d5df04a39b5c4a965e2397fF90 fix multicol+l add dycore grid (#1363)editsrc/CLUBB_core/remapping_module.F90editsrc/Benchmark_cases/prescribe_forcings.F90editsrc/Benchmark_cases/time_dependent_input.F90editsrc/Benchmark_cases/atex.F90editsrc/clubb_driver.F90utilities/check_division.pybc8d70735e710ef36f81e42f58843908ae3ddcbc1790104995000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comDelete utilities/check_division.py @shellwitz and I updated this script to python3, ran it, and discovered that it finds too many instances of division in CLUBB to be useful. So let's delete it. 2026-09-22 14:23:15 -0500bc8d70735e710ef36f81e42f58843908ae3ddcbcDelete utilities/check_division.pydeleteutilities/check_division.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse578http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/578/576http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/576/Started by an SCM change57677b73e25b7c54c85e9714178efbd6dc893834dc577b73e25b7c54c85e9714178efbd6dc893834dc5refs/remotes/origin/master77b73e25b7c54c85e9714178efbd6dc893834dc577b73e25b7c54c85e9714178efbd6dc893834dc5refs/remotes/origin/master77b73e25b7c54c85e9714178efbd6dc893834dc577b73e25b7c54c85e9714178efbd6dc893834dc5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#576471621107644clubb_BFB_r8029_flags_gfortran_test #576576false5768619SUCCESS1789806426862http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/576/dash_app/shared/broker.pydash_app/run_tab/tab.pydash_app/plot_tab/case_cache.pydash_app/shared/background.pydash_app/profile_tab/callbacks.pydash_app/shared/activity.pyutilities/pytests/test_time_clubb.pydash_app/assets/14_tab_compile_theme.cssdash_app/pytests/test_selected_build.pydash_app/compile_tab/callbacks.pydash_app/shared/actions.pydash_app/plot_tab/plot_types/custom_plot.pyutilities/time_clubb.pydash_app/misc_tab/layout.pydash_app/shared/broker_protocol.pydash_app/plot_tab/plot_types/pdf_contour_plot.pydash_app/tune_tab/tab.pydash_app/pytests/test_pyplotgen_export.pydash_app/assets/37_workspace_persistence.jsdash_app/plot_tab/plot_types/shared.pydash_app/persistence.pydash_app/plot_tab/tasks.pydash_app/assets/30_run_ui_resize.jsdash_app/compile_tab/tab.pydash_app/plot_tab/callbacks_grid.pydash_app/assets/34_plot_chooser.jsdash_app/shared/array_cache.pydash_app/pytests/test_output_discovery.pydash_app/plot_tab/tab.pydash_app/assets/32_plots_constant_param_rows.jsutilities/timing_profiles.pydash_app/plot_tab/callbacks_pyplotgen.pydash_app/misc_tab/mixing_length_trajectories/analysis.pydash_app/pytests/test_plot_tasks.pydash_app/plot_tab/plot_types/timeheight_plot.pydash_app/assets/36_tune_ui_resize.jsdash_app/pytests/test_profile_tab.pydash_app/plot_tab/state.pydash_app/pytests/test_plot_extraction.pydash_app/README.mddash_app/misc_tab/tab.pydash_app/pytests/test_pane_resize.pydash_app/plot_tab/plot_types/budget_plot.pydash_app/pytests/test_performance_polling.pydash_app/plot_tab/layout.pydash_app/plot_tab/async_callbacks.pydash_app/profile_tab/runtime.pydash_app/tutorial_tab/tab.pydash_app/assets/31_plots_ui_resize.jsdash_app/lazy_tabs.pydash_app/plot_tab/callbacks_controls.pydash_app/plot_tab/callbacks_params.pydash_app/tutorial_tab/layout.pydash_app/app.pydash_app/assets/33_plot_tasks.jsdash_app/plot_tab/pyplotgen_runtime.pydash_app/plot_tab/plot_types/profile_plot.pydash_app/pytests/test_plot_case_cache.pydash_app/profile_tab/tab.pydash_app/pytests/test_activity.pydash_app/plot_tab/plot_types/subcolumn_plot.pydash_app/services/profiles.pydash_app/tune_tab/callbacks_workspaces.pydash_app/pytests/test_param_disclosures.pydash_app/DEVELOPMENT.mddash_app/assets/12_tab_plots_theme.cssdash_app/pytests/test_plot_grid_updates.pydash_app/shared/broker_client.pydash_app/reports_tab/tab.pydash_app/plot_tab/callbacks_case.pydash_app/plot_tab/plot_types/timeseries_plot.pydash_app/pytests/test_state_persistence.pydash_app/pytests/test_app_startup.pyaf35e5202409ab58c575e8d2841f59d31ba80c941789748367000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comDash Improvements (#1360) * Improve Dash plot responsiveness and bound data caches * Dash improvements, mainly for performance * Removing performance audit file that is no longer needed: 2026-09-18 11:19:27 -0500af35e5202409ab58c575e8d2841f59d31ba80c94Dash Improvements (#1360)editdash_app/plot_tab/plot_types/custom_plot.pyeditdash_app/DEVELOPMENT.mdeditutilities/pytests/test_time_clubb.pyeditdash_app/assets/30_run_ui_resize.jseditdash_app/plot_tab/plot_types/budget_plot.pyeditdash_app/pytests/test_selected_build.pyeditdash_app/reports_tab/tab.pyeditdash_app/profile_tab/tab.pyeditdash_app/plot_tab/callbacks_params.pyeditutilities/time_clubb.pyeditdash_app/compile_tab/tab.pyadddash_app/pytests/test_plot_extraction.pyeditutilities/timing_profiles.pyeditdash_app/plot_tab/plot_types/timeseries_plot.pyeditdash_app/assets/12_tab_plots_theme.cssadddash_app/plot_tab/case_cache.pydeletedash_app/assets/32_plots_constant_param_rows.jseditdash_app/assets/37_workspace_persistence.jseditdash_app/pytests/test_param_disclosures.pyeditdash_app/compile_tab/callbacks.pyeditdash_app/plot_tab/callbacks_grid.pyeditdash_app/pytests/test_plot_grid_updates.pyeditdash_app/plot_tab/plot_types/subcolumn_plot.pyeditdash_app/shared/actions.pyeditdash_app/plot_tab/callbacks_pyplotgen.pyeditdash_app/pytests/test_pyplotgen_export.pyeditdash_app/shared/background.pyeditdash_app/pytests/test_state_persistence.pyeditdash_app/tutorial_tab/layout.pyadddash_app/pytests/test_plot_tasks.pyeditdash_app/pytests/test_profile_tab.pyeditdash_app/pytests/test_output_discovery.pyadddash_app/lazy_tabs.pyeditdash_app/profile_tab/callbacks.pyadddash_app/pytests/test_pane_resize.pyeditdash_app/run_tab/tab.pyadddash_app/plot_tab/async_callbacks.pyadddash_app/shared/array_cache.pyadddash_app/plot_tab/tasks.pyeditdash_app/services/profiles.pyeditdash_app/pytests/test_activity.pyeditdash_app/plot_tab/plot_types/pdf_contour_plot.pyeditdash_app/tutorial_tab/tab.pyeditdash_app/app.pyadddash_app/assets/34_plot_chooser.jseditdash_app/assets/36_tune_ui_resize.jseditdash_app/shared/broker_protocol.pyeditdash_app/assets/31_plots_ui_resize.jseditdash_app/shared/activity.pyeditdash_app/plot_tab/plot_types/shared.pyeditdash_app/persistence.pyeditdash_app/shared/broker.pyeditdash_app/tune_tab/callbacks_workspaces.pyeditdash_app/plot_tab/pyplotgen_runtime.pyadddash_app/pytests/test_performance_polling.pyeditdash_app/README.mdeditdash_app/assets/14_tab_compile_theme.csseditdash_app/misc_tab/layout.pyeditdash_app/profile_tab/runtime.pyeditdash_app/shared/broker_client.pyeditdash_app/plot_tab/plot_types/profile_plot.pyeditdash_app/misc_tab/mixing_length_trajectories/analysis.pyeditdash_app/misc_tab/tab.pyeditdash_app/pytests/test_app_startup.pyeditdash_app/tune_tab/tab.pyadddash_app/pytests/test_plot_case_cache.pyeditdash_app/plot_tab/layout.pyeditdash_app/plot_tab/tab.pyeditdash_app/plot_tab/callbacks_case.pyeditdash_app/plot_tab/callbacks_controls.pyeditdash_app/plot_tab/plot_types/timeheight_plot.pyeditdash_app/plot_tab/state.pyadddash_app/assets/33_plot_tasks.jstests/README5b5bf5f74f30e0332db965215e3de5e6baf72d6e1789749148000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproving README section for column mirror test 2026-09-18 11:32:28 -05005b5bf5f74f30e0332db965215e3de5e6baf72d6eImproving README section for column mirror testedittests/READMEclubb_jax/src/CLUBB_core/fill_holes.pyclubb_jax/src/CLUBB_core/LY93_pdf.pyclubb_jax/src/CLUBB_core/new_hybrid_pdf.pyclubb_jax/src/CLUBB_core/new_hybrid_pdf_main.pyclubb_jax/src/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyclubb_jax/src/CLUBB_core/mixing_length.pyclubb_jax/tests/test_full_timestep_grad.pyclubb_jax/tests/test_fill_holes_mean.pyclubb_jax/src/CLUBB_core/setup_clubb_pdf_params.pyclubb_jax/tests/test_fill_holes_global.pyclubb_jax/tests/test_differentiability.pyclubb_jax/tests/test_fill_holes_autodiff.pyclubb_jax/src/CLUBB_core/new_pdf.pyclubb_jax/tests/test_transform_pdf_chi_eta_component.pyclubb_jax/tests/test_splatting_autodiff.pyclubb_jax/src/CLUBB_core/pdf_closure_module.pyclubb_jax/src/advance_clubb_to_end.pyclubb_jax/src/CLUBB_core/new_tsdadg_pdf.pyclubb_jax/src/CLUBB_core/pdf_utilities.pyclubb_jax/tests/test_fill_holes_sliding_window.pyclubb_jax/README.mdclubb_jax/src/CLUBB_core/advance_helper_module.pyclubb_jax/tests/test_numerics_autodiff.py77b73e25b7c54c85e9714178efbd6dc893834dc51789784882000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMaking certain things differentiation safe, various parts had issues with sqrt or divisions that needed clipping for reverse mode calcualtions. Lot's of code sections seemed to already have worked around this with a safe_sqrt method (or some variation) that I standardized and put in advance_helper. (#1361) 2026-09-18 21:28:02 -050077b73e25b7c54c85e9714178efbd6dc893834dc5Making certain things differentiation safe, various parts had issues with sqrt or divisions that needed clipping for reverse mode calcualtions. Lot's of code sections seemed to already have worked around this with a safe_sqrt method (or some variation) that I standardized and put in advance_helper. (#1361)editclubb_jax/src/CLUBB_core/fill_holes.pyeditclubb_jax/src/CLUBB_core/mixing_length.pyaddclubb_jax/tests/test_fill_holes_autodiff.pyeditclubb_jax/README.mdeditclubb_jax/src/CLUBB_core/new_pdf.pyeditclubb_jax/src/CLUBB_core/new_hybrid_pdf_main.pyaddclubb_jax/tests/test_splatting_autodiff.pyeditclubb_jax/tests/test_fill_holes_global.pyeditclubb_jax/src/advance_clubb_to_end.pyeditclubb_jax/src/CLUBB_core/new_tsdadg_pdf.pyaddclubb_jax/tests/test_full_timestep_grad.pyeditclubb_jax/src/CLUBB_core/advance_helper_module.pyeditclubb_jax/tests/test_fill_holes_mean.pyaddclubb_jax/tests/test_numerics_autodiff.pyeditclubb_jax/src/CLUBB_core/LY93_pdf.pyeditclubb_jax/tests/test_transform_pdf_chi_eta_component.pyeditclubb_jax/src/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyeditclubb_jax/src/CLUBB_core/setup_clubb_pdf_params.pyeditclubb_jax/src/CLUBB_core/pdf_closure_module.pyeditclubb_jax/tests/test_fill_holes_sliding_window.pyeditclubb_jax/src/CLUBB_core/pdf_utilities.pyeditclubb_jax/tests/test_differentiability.pyeditclubb_jax/src/CLUBB_core/new_hybrid_pdf.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse577http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/577/575http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/575/Started by an SCM change57517b29a7e938300692cec5c6c7e78aae7b957856817b29a7e938300692cec5c6c7e78aae7b9578568refs/remotes/origin/master17b29a7e938300692cec5c6c7e78aae7b957856817b29a7e938300692cec5c6c7e78aae7b9578568refs/remotes/origin/master17b29a7e938300692cec5c6c7e78aae7b957856817b29a7e938300692cec5c6c7e78aae7b9578568refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#575136734107644clubb_BFB_r8029_flags_gfortran_test #575575false5758541SUCCESS1789720027613http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/575/clubb_jax/src/clubb_standalone.pydash_app/profile_tab/callbacks.pydash_app/pytests/test_jax_device.pyclubb_jax/run_jax.pydash_app/README.mddash_app/assets/09_selected_build_badge.cssdash_app/pytests/test_selected_build.pydash_app/compile_tab/callbacks.pydash_app/shared/actions.pydash_app/shared/jax_device.pyclubb_jax/tests/test_radiation_module.pydash_app/run_tab/telemetry.pydash_app/assets/11_tab_run_theme.cssdash_app/profile_tab/runtime.pytests/run_jax_vs_fortran_cases.pyclubb_jax/runtime_info.pydash_app/run_tab/runtime.pyclubb_jax/requirements-metal.txtdash_app/run_tab/layout.pyclubb_jax/run_jax_wrapper.shclubb_python_driver/advance_clubb_to_end.pyrun_scripts/run_scm.pydash_app/services/models.pydash_app/pytests/test_agent_services.pydash_app/pytests/test_callbacks_runs.pyclubb_jax/tests/test_jax_cli_options.pydash_app/DEVELOPMENT.mdclubb_jax/tests/test_runtime_info.pyclubb_jax/src/advance_clubb_to_end.pydash_app/pytests/test_run_broker_simplification.pydash_app/run_tab/callbacks_runs.pydash_app/compile_tab/build_selector.pyclubb_jax/README.mdclubb_jax/src/Radiation/radiation_module.pydash_app/pytests/test_profile_tab.py17b29a7e938300692cec5c6c7e78aae7b95785681789714227000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comJax integration (#1356) * Starting to integrate jax with dash more and making the run_scm -jax flag a little more useful by being able to choose to run on the CPU or GPU via -jax=cpu or -jax=gpu rather than requireing environment variables * Making the jax option even fancier, dash runner chooser is better/smarter now too * Make CLUBB-JAX launcher portable across macOS and Linux * Making the jax device detection work without needing the venvs setup first. * Keep JAX radiation compiled with static timestep scheduling Preserve the host radiation flag as a static JIT argument and mirror the Fortran conditional directly. Remove the Metal-only eager execution path and redundant branch helpers. Cover both schedule states, statistics cadence, soil update ordering, and alternating time-dependent radiation calls. Validated with CPU and Metal tests and three-step standalone runs. * Microphys loop push (#1355) * First set of loop pushes - feature addition to stats too to allow for calling stats_update multiple times in a timestep and averaging the results, which is quite nice for silhs and allows us to get rid of the special microphysics stats type * More loop pushes * Tiny changes to restore BFBness * Pushing loop into advance_microphys * Little more loop push * More basic loop pushing * More loop pushing, also found what seems to be a bug with additional columns, theres code that uses only the first one. Im leaving this in for now to maintain BFBness, but labeled the problem areas with TODOs * Potentially final batch of loop pushes * Adding acc fixes for microphys stuff - the 2D versions called are GPUized, so they need acc data statements surrounding them * Removing unneccesary single col versions of lots of things * Restoring some comments and formatting * A little more restoration, maybe unnecceary * Little OpenACC fixes for microphys code RESOLVED:900681c91bdbdf8d6cd069bab01663ebac1a3279 * renamed jax jenkins test to clubb_jax_tests * Making column mirror test work by comparing two different output files rather than one. This test now runs once with 3 different columns in a certain order, say ABC, and again with reverse order CBA, then ensures that A=A B=B and C=C (bit-for-bit equivalence) in both files. This should fail now actually, as there is currently a bug, and this update is intented to improve this test so that it fails before we fix the bug * Making column mirror test use CPU. This makes it much faster and doesn't change the test at all - not sure why I made it use GPU originally. * Fixing microphys bug that has been around for quite a while. This happened when making clubb standalone use multiple columns, and only affects columns other than the first. This is BIT_CHANGING, but only for microphysics cases using multiple columns (#1358) * Test different f90 vs jax flags (#1357) * wip * wip * test is basically done -> find out why some jax runs fail, mabe also run fortran even if jax fails * fortran is tested regardless of whether jax fails * changed jenkinsfile + removed l_Lscale_plume_centered from flag file + flag_set readme + lil print F90 fix * added comments and a new flagset for jax tests * added new jax flag config file to Jenkinstest * Small UI fixes to make entry boxes refresh better * Making python/jax driver status prints happen right away * Removing accidentally added file * Improving readmes * Simpliciation cleanup --------- Co-authored-by: Daniel Ebel <debel@uwm.edu> Co-authored-by: Daniel Ebel <124399436+shellwitz@users.noreply.github.com> 2026-09-18 01:50:27 -050017b29a7e938300692cec5c6c7e78aae7b9578568Jax integration (#1356)editclubb_python_driver/advance_clubb_to_end.pyaddclubb_jax/tests/test_runtime_info.pyeditdash_app/pytests/test_callbacks_runs.pyeditdash_app/run_tab/layout.pyeditdash_app/run_tab/callbacks_runs.pyedittests/run_jax_vs_fortran_cases.pyeditdash_app/README.mdeditdash_app/assets/11_tab_run_theme.csseditclubb_jax/src/advance_clubb_to_end.pyeditclubb_jax/src/Radiation/radiation_module.pyeditclubb_jax/README.mdaddclubb_jax/runtime_info.pyaddclubb_jax/tests/test_jax_cli_options.pyeditdash_app/DEVELOPMENT.mdeditdash_app/shared/actions.pyaddclubb_jax/requirements-metal.txteditdash_app/pytests/test_profile_tab.pyeditclubb_jax/src/clubb_standalone.pyeditdash_app/pytests/test_selected_build.pyeditdash_app/profile_tab/runtime.pyeditclubb_jax/tests/test_radiation_module.pydeleteclubb_jax/run_jax_wrapper.sheditdash_app/pytests/test_run_broker_simplification.pyadddash_app/pytests/test_jax_device.pyeditdash_app/compile_tab/callbacks.pyeditdash_app/pytests/test_agent_services.pyadddash_app/shared/jax_device.pyeditdash_app/assets/09_selected_build_badge.csseditrun_scripts/run_scm.pyeditdash_app/profile_tab/callbacks.pyeditdash_app/run_tab/telemetry.pyeditdash_app/services/models.pyeditdash_app/compile_tab/build_selector.pyaddclubb_jax/run_jax.pyeditdash_app/run_tab/runtime.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse576http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/576/574http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/574/Started by an SCM change574e2f38c22369792200d556168276e492b5bff6717e2f38c22369792200d556168276e492b5bff6717refs/remotes/origin/mastere2f38c22369792200d556168276e492b5bff6717e2f38c22369792200d556168276e492b5bff6717refs/remotes/origin/mastere2f38c22369792200d556168276e492b5bff6717e2f38c22369792200d556168276e492b5bff6717refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5742163401107644clubb_BFB_r8029_flags_gfortran_test #574574false5748451SUCCESS1789633627725http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/574/input/flag_sets/config_core_flags_wo_never_supported_jax_features.jsonrun_scripts/run_clubb_w_varying_flags.pytests/README.gitignoreutilities/flag_sets.pyjenkins_tests/clubb_jax_tests/Jenkinsfileinput/flag_sets/run_bindiff_w_flags_config_core_flags.jsoninput/flag_sets/README.mdsrc/CLUBB_core/err_info_type_module.F90tests/run_jax_vs_fortran_cases.py3a0c0fbbeb0eae52b7b98be4555b18dc6036398a1789591299000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comTest different f90 vs jax flags (#1357) * wip * wip * test is basically done -> find out why some jax runs fail, mabe also run fortran even if jax fails * fortran is tested regardless of whether jax fails * changed jenkinsfile + removed l_Lscale_plume_centered from flag file + flag_set readme + lil print F90 fix * added comments and a new flagset for jax tests * added new jax flag config file to Jenkinstest 2026-09-16 15:41:39 -05003a0c0fbbeb0eae52b7b98be4555b18dc6036398aTest different f90 vs jax flags (#1357)addinput/flag_sets/config_core_flags_wo_never_supported_jax_features.jsoneditrun_scripts/run_clubb_w_varying_flags.pyedit.gitignoreeditjenkins_tests/clubb_jax_tests/Jenkinsfileeditsrc/CLUBB_core/err_info_type_module.F90editinput/flag_sets/run_bindiff_w_flags_config_core_flags.jsonaddinput/flag_sets/README.mdedittests/READMEedittests/run_jax_vs_fortran_cases.pyaddutilities/flag_sets.pytests/READMEtests/pytests/test_column_mirror.pyjenkins_tests/clubb_column_mirror_test/Jenkinsfiletests/check_mirrored_multi_col_output.pye2f38c22369792200d556168276e492b5bff67171789627411000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduConsolidating column mirror test functionality into the test script itself - now the script does it all, no need to configure/build/run anymore. Also hugely improving comments and explainations 2026-09-17 01:43:31 -0500e2f38c22369792200d556168276e492b5bff6717Consolidating column mirror test functionality into the test script itself - now the script does it all, no need to configure/build/run anymore. Also hugely improving comments and explainationsedittests/READMEaddtests/pytests/test_column_mirror.pyeditjenkins_tests/clubb_column_mirror_test/Jenkinsfileedittests/check_mirrored_multi_col_output.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse575http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/575/573http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/573/Started by an SCM change57337da5d26c1a8137c484f3b8b0eb1a5d79ac011b837da5d26c1a8137c484f3b8b0eb1a5d79ac011b8refs/remotes/origin/master37da5d26c1a8137c484f3b8b0eb1a5d79ac011b837da5d26c1a8137c484f3b8b0eb1a5d79ac011b8refs/remotes/origin/master37da5d26c1a8137c484f3b8b0eb1a5d79ac011b837da5d26c1a8137c484f3b8b0eb1a5d79ac011b8refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5731467512107644clubb_BFB_r8029_flags_gfortran_test #573573false5738344SUCCESS1789547229652http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/573/tests/READMEjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfiletests/check_mirrored_multi_col_output.py9baabf2f36b5f7b9c88b719954598e278be24a1a1789512567000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking column mirror test work by comparing two different output files rather than one. This test now runs once with 3 different columns in a certain order, say ABC, and again with reverse order CBA, then ensures that A=A B=B and C=C (bit-for-bit equivalence) in both files. This should fail now actually, as there is currently a bug, and this update is intented to improve this test so that it fails before we fix the bug 2026-09-15 17:49:27 -05009baabf2f36b5f7b9c88b719954598e278be24a1aMaking column mirror test work by comparing two different output files rather than one. This test now runs once with 3 different columns in a certain order, say ABC, and again with reverse order CBA, then ensures that A=A B=B and C=C (bit-for-bit equivalence) in both files. This should fail now actually, as there is currently a bug, and this update is intented to improve this test so that it fails before we fix the bugeditjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileedittests/READMEedittests/check_mirrored_multi_col_output.pyjenkins_tests/clubb_column_mirror_test/Jenkinsfilejenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile26cfce3b9083a3d32fe4fbec9d4294c2cbafdc271789521623000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking column mirror test use CPU. This makes it much faster and doesn't change the test at all - not sure why I made it use GPU originally. 2026-09-15 20:20:23 -050026cfce3b9083a3d32fe4fbec9d4294c2cbafdc27Making column mirror test use CPU. This makes it much faster and doesn't change the test at all - not sure why I made it use GPU originally.deletejenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileaddjenkins_tests/clubb_column_mirror_test/Jenkinsfilesrc/Microphys/microphys_driver.F90src/SILHS/est_kessler_microphys_module.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/Microphys/mixed_moment_PDF_integrals.F9037da5d26c1a8137c484f3b8b0eb1a5d79ac011b81789524301000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing microphys bug that has been around for quite a while. This happened when making clubb standalone use multiple columns, and only affects columns other than the first. This is BIT_CHANGING, but only for microphysics cases using multiple columns (#1358) 2026-09-15 21:05:01 -050037da5d26c1a8137c484f3b8b0eb1a5d79ac011b8Fixing microphys bug that has been around for quite a while. This happened when making clubb standalone use multiple columns, and only affects columns other than the first. This is BIT_CHANGING, but only for microphysics cases using multiple columns (#1358)editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/Microphys/microphys_driver.F90editsrc/Microphys/mixed_moment_PDF_integrals.F90editsrc/SILHS/est_kessler_microphys_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse574http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/574/572http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/572/Started by an SCM change572ff0eeed50d1271837294a505a65d5848a79f2ec8ff0eeed50d1271837294a505a65d5848a79f2ec8refs/remotes/origin/masterff0eeed50d1271837294a505a65d5848a79f2ec8ff0eeed50d1271837294a505a65d5848a79f2ec8refs/remotes/origin/masterff0eeed50d1271837294a505a65d5848a79f2ec8ff0eeed50d1271837294a505a65d5848a79f2ec8refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#57295941107644clubb_BFB_r8029_flags_gfortran_test #572572false5728244SUCCESS1788942429721http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/572/jenkins_tests/clubb_jax_tests/Jenkinsfilejenkins_tests/compare_jax_vs_fortran/Jenkinsfileff0eeed50d1271837294a505a65d5848a79f2ec81788879890000http://carson.math.uwm.edu/jenkins/user/ebelDaniel Ebeldebel@uwm.edurenamed jax jenkins test to clubb_jax_tests 2026-09-08 10:04:50 -0500ff0eeed50d1271837294a505a65d5848a79f2ec8renamed jax jenkins test to clubb_jax_testsdeletejenkins_tests/compare_jax_vs_fortran/Jenkinsfileaddjenkins_tests/clubb_jax_tests/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/ebelDaniel Ebelfalse573http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/573/571http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/571/Started by an SCM change571ed96b2092885108caaea1b8aba3b4211b245ff7aed96b2092885108caaea1b8aba3b4211b245ff7arefs/remotes/origin/mastered96b2092885108caaea1b8aba3b4211b245ff7aed96b2092885108caaea1b8aba3b4211b245ff7arefs/remotes/origin/mastered96b2092885108caaea1b8aba3b4211b245ff7aed96b2092885108caaea1b8aba3b4211b245ff7arefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#571679189107644clubb_BFB_r8029_flags_gfortran_test #571571false5718154SUCCESS1788856026720http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/571/src/Microphys/estimate_scm_microphys_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/Microphys/advance_microphys_module.F90src/Microphys/KK_microphys_module.F90ed96b2092885108caaea1b8aba3b4211b245ff7a1788832457000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduLittle OpenACC fixes for microphys code RESOLVED:900681c91bdbdf8d6cd069bab01663ebac1a3279 2026-09-07 20:54:17 -0500ed96b2092885108caaea1b8aba3b4211b245ff7aLittle OpenACC fixes for microphys code RESOLVED:900681c91bdbdf8d6cd069bab01663ebac1a3279editsrc/Microphys/advance_microphys_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/Microphys/estimate_scm_microphys_module.F90editsrc/Microphys/KK_microphys_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse572http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/572/570http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/570/Started by an SCM change570900681c91bdbdf8d6cd069bab01663ebac1a3279900681c91bdbdf8d6cd069bab01663ebac1a3279refs/remotes/origin/master900681c91bdbdf8d6cd069bab01663ebac1a3279900681c91bdbdf8d6cd069bab01663ebac1a3279refs/remotes/origin/master900681c91bdbdf8d6cd069bab01663ebac1a3279900681c91bdbdf8d6cd069bab01663ebac1a3279refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#570382920107644clubb_BFB_r8029_flags_gfortran_test #570570false5708058SUCCESS1788683229563http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/570/src/Microphys/KK_microphys/CMakeLists.txtsrc/Microphys/KK_microphys/KK_upscaled_turbulent_sed.F90src/Microphys/Microphys_utils/microphys_stats_vars_module.F90src/Microphys/KK_microphys_module.F90src/SILHS/CMakeLists.txtsrc/CLUBB_core/stats_netcdf.F90src/Microphys/pdf_hydromet_microphys_wrapper.F90src/Microphys/advance_microphys_module.F90src/Microphys/lh_microphys_driver_module.F90src/Microphys/KK_microphys/KK_upscaled_covariances.F90src/Microphys/ice_dfsn_module.F90src/SILHS/est_kessler_microphys_module.F90src/Microphys/cloud_sed_module.F90src/Microphys/microphys_interface.incsrc/CLUBB_core/stats_clubb_utilities.F90src/SILHS/math_utilities.F90src/Microphys/estimate_scm_microphys_module.F90src/Microphys/CMakeLists.txtsrc/Microphys/Morrison_microphys/CMakeLists.txtsrc/SILHS/silhs_api_module.F90src/Microphys/mixed_moment_PDF_integrals.F90tests/run_silhs_test.pysrc/SILHS/latin_hypercube_driver_module.F90src/Microphys/morrison_microphys_module.F90src/Microphys/gfdl_activation.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/SILHS/lh_microphys_var_covar_module.F90src/clubb_driver.F90src/Microphys/silhs_category_variance_module.F90src/CLUBB_core/fill_holes.F90src/Microphys/microphys_driver.F90src/Radiation/radiation_module.F90src/Microphys/Microphys_utils/CMakeLists.txt900681c91bdbdf8d6cd069bab01663ebac1a32791788666832000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMicrophys loop push (#1355) * First set of loop pushes - feature addition to stats too to allow for calling stats_update multiple times in a timestep and averaging the results, which is quite nice for silhs and allows us to get rid of the special microphysics stats type * More loop pushes * Tiny changes to restore BFBness * Pushing loop into advance_microphys * Little more loop push * More basic loop pushing * More loop pushing, also found what seems to be a bug with additional columns, theres code that uses only the first one. Im leaving this in for now to maintain BFBness, but labeled the problem areas with TODOs * Potentially final batch of loop pushes * Adding acc fixes for microphys stuff - the 2D versions called are GPUized, so they need acc data statements surrounding them * Removing unneccesary single col versions of lots of things * Restoring some comments and formatting * A little more restoration, maybe unnecceary 2026-09-05 22:53:52 -0500900681c91bdbdf8d6cd069bab01663ebac1a3279Microphys loop push 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JAX (#1351) * Testing new porting shortcut by creating a jax version of advance_xm_wpxp.py - it wen't well. Also updating the porting shortcut with more tips. * Small update to porting shortcut * Iterative improvements to porting shortcut * Using porting script to port advance_xp2_xpyp in one go - still some issues that seems to require rerunning to fix issues, which is sad but maybe the best we can do with such a simple method * Little bug fixes * Updates to make the ports create better jax in the sense that it is more jit-ready * Adding a more general plan to also use CLUBB-JAX and using it on advance_xm_wpxp * Cleanup * More properly jax-izing the current jax ports * More formatting of ported jax code * More formatting of ported jax code * Updates in pursuit of full jit-compatibility * Adding jit compile test * Fully jitting advance_xp2_xpyp * Copying parameter_indices from CLUBB-JAX but subtracting 1 to avoid -1 in code * Little update to port shortcut * Jitting and formatting CLUBB-JAX * Mostly formatting * Updating jax code * Improving stats outputting * Compile mono flux range loops with JAX * Improvement to jax mixing length port * Organizing stats code * Making jax work on GPU * Improvements to prescribe forcings code * Mainly prescribe forcings formatting work * Small improvements, getting rid of unneccesary weird jit statement * Radiation porting completed. Bugsrad and silhs radiation were intentionally left out for now. * Removing stale code and adding a proposal.md file detailing a potential future feature to make the python_api work with current jax code * Proper port of model flags and parameters and constants and such - those there were all kinda put into one file before * new jenkinsfile added * Tiny cleanup and adding back some stats outputs for microphysics that we need for some reason * limited to only one process. Find out built time * made jenkins jax tests faster by running them not so extensively * Mainly working on README, also some other tiny things: changing default test stats list to standard instead of all_stats, and renaming run_jax.sh to run_jax_wrapper.sh --------- Co-authored-by: Daniel Ebel <debel@uwm.edu> 2026-09-02 13:15:01 -050053920ce2095c4b721f59936d5933dd6da8bcb590Clubb JAX 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by an SCM change5682cd63f391364ece6bd63ccffa31f7c4b421ee5312cd63f391364ece6bd63ccffa31f7c4b421ee531refs/remotes/origin/master2cd63f391364ece6bd63ccffa31f7c4b421ee5312cd63f391364ece6bd63ccffa31f7c4b421ee531refs/remotes/origin/master2cd63f391364ece6bd63ccffa31f7c4b421ee5312cd63f391364ece6bd63ccffa31f7c4b421ee531refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#568222106107644clubb_BFB_r8029_flags_gfortran_test #568568false5687815SUCCESS1787992026087http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/568/jenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfile2cd63f391364ece6bd63ccffa31f7c4b421ee5311787963911000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding -debug to branch vs master bindiff test, this is to turn off compiler optimizations that can cause innocent changes to cause tiny differences 2026-08-28 19:38:31 -05002cd63f391364ece6bd63ccffa31f7c4b421ee531Adding -debug to branch vs master bindiff test, this is to turn off compiler optimizations that can cause innocent changes to cause tiny differenceseditjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse569http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/569/567http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/567/Started by an SCM change5673a5ea18d3acadfec92c6af657031dddb5c1cb6623a5ea18d3acadfec92c6af657031dddb5c1cb662refs/remotes/origin/master3a5ea18d3acadfec92c6af657031dddb5c1cb6623a5ea18d3acadfec92c6af657031dddb5c1cb662refs/remotes/origin/master3a5ea18d3acadfec92c6af657031dddb5c1cb6623a5ea18d3acadfec92c6af657031dddb5c1cb662refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#567157260107644clubb_BFB_r8029_flags_gfortran_test #567567false5677734SUCCESS1787819226677http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/567/run_scripts/run_scm_all.py3a5ea18d3acadfec92c6af657031dddb5c1cb6621787754687000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduAttempted fix for Jenkins clubb_BFB_gfortran_test to include "bomex_5day_4scam" (#1349) 2026-08-26 09:31:27 -05003a5ea18d3acadfec92c6af657031dddb5c1cb662Attempted fix for Jenkins clubb_BFB_gfortran_test to include "bomex_5day_4scam" (#1349)editrun_scripts/run_scm_all.pygithttp://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockfalse568http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/568/566http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/566/Started by an SCM change566639e840b79fd413417d16751d1556da5ebc0e5e0639e840b79fd413417d16751d1556da5ebc0e5e0refs/remotes/origin/master639e840b79fd413417d16751d1556da5ebc0e5e0639e840b79fd413417d16751d1556da5ebc0e5e0refs/remotes/origin/master639e840b79fd413417d16751d1556da5ebc0e5e0639e840b79fd413417d16751d1556da5ebc0e5e0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#566155837107644clubb_BFB_r8029_flags_gfortran_test #566566false5667658SUCCESS1787732826869http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/566/run_scripts/run_scm_all.py49b28e58b3463c7c376bc4a49c6ba92b13c387391787681276000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduAdding 'bomex_5day_4scam' to MIN_CASES for Jenkins clubb_BFB_gfortran_test. This is BIT_CHANGING. 2026-08-25 13:07:56 -050049b28e58b3463c7c376bc4a49c6ba92b13c38739Adding 'bomex_5day_4scam' to MIN_CASES for Jenkins clubb_BFB_gfortran_test. This is BIT_CHANGING.editrun_scripts/run_scm_all.pyrun_scripts/run_scm_all.py313fc4213b88e04bcd664f3155adb4fbaa04a3f11787685286000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduAdded blank line in order to run Jenkins test 2026-08-25 14:14:46 -0500313fc4213b88e04bcd664f3155adb4fbaa04a3f1Added blank line in order to run Jenkins testeditrun_scripts/run_scm_all.pyrun_scripts/run_scm_all.py55a6f491250c667eb115fb97202275c81c6a5cdd1787692415000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line in order to trigger Jenkins tests 2026-08-25 16:13:35 -050055a6f491250c667eb115fb97202275c81c6a5cddAdd blank line in order to trigger Jenkins testseditrun_scripts/run_scm_all.pysrc/Benchmark_cases/time_dependent_input.F90639e840b79fd413417d16751d1556da5ebc0e5e01787697926000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBug fix: the i in rho is the column dimension, not time dimension. Since this fixes a bug, it is technically BIT_CHANGING 2026-08-25 17:45:26 -0500639e840b79fd413417d16751d1556da5ebc0e5e0Bug fix: the i in rho is the column dimension, not time dimension. Since this fixes a bug, it is technically BIT_CHANGINGeditsrc/Benchmark_cases/time_dependent_input.F90githttp://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse567http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/567/565http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/565/Started by an SCM change565b2993e0082ef3958bb215698697b34655a20b1afb2993e0082ef3958bb215698697b34655a20b1afrefs/remotes/origin/masterb2993e0082ef3958bb215698697b34655a20b1afb2993e0082ef3958bb215698697b34655a20b1afrefs/remotes/origin/masterb2993e0082ef3958bb215698697b34655a20b1afb2993e0082ef3958bb215698697b34655a20b1afrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5651929078107644clubb_BFB_r8029_flags_gfortran_test #565565false5657563SUCCESS1787646426774http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/565/clubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/prescribe_forcings.pyclubb_python_api/f2py_fortran_wrappers/prescribe_forcings_module_wrapper.F90clubb_python_driver/advance_clubb_to_end.pyd7fa9a72d2b8d10690060876afe44fd1c96771311787602115000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixed clubb python (#1346) - Necessary changes to get 'clubb_python_test_branch' jenkins test to pass 2026-08-24 15:08:35 -0500d7fa9a72d2b8d10690060876afe44fd1c9677131Fixed clubb python (#1346)editclubb_python_api/clubb_python/prescribe_forcings.pyeditclubb_python_driver/advance_clubb_to_end.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/f2py_fortran_wrappers/prescribe_forcings_module_wrapper.F90src/CLUBB_core/advance_clubb_core_module.F90b2993e0082ef3958bb215698697b34655a20b1af1787604006000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove a blank line in order to trigger nightly tests Removed unnecessary blank line at the beginning of the module. 2026-08-24 15:40:06 -0500b2993e0082ef3958bb215698697b34655a20b1afRemove a blank line in order to trigger nightly testseditsrc/CLUBB_core/advance_clubb_core_module.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse566http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/566/564http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/564/Started by an SCM change5640c90d7040b1f163985b1f884eaf431e1c356cdf00c90d7040b1f163985b1f884eaf431e1c356cdf0refs/remotes/origin/master0c90d7040b1f163985b1f884eaf431e1c356cdf00c90d7040b1f163985b1f884eaf431e1c356cdf0refs/remotes/origin/master0c90d7040b1f163985b1f884eaf431e1c356cdf00c90d7040b1f163985b1f884eaf431e1c356cdf0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#564311866107644clubb_BFB_r8029_flags_gfortran_test #564564false5647457SUCCESS1787387228631http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/564/readiopdata_core_module.F90bc3376036f8b43c5386c1b184bce90015fb8b1531630365994000http://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldcisenfireldc@gmail.comMove readiopdata_core_module.F90 to a subdirectory for use with git-subtree 2021-08-30 18:26:34 -0500bc3376036f8b43c5386c1b184bce90015fb8b153Move readiopdata_core_module.F90 to a subdirectory for use with git-subtreeaddreadiopdata_core_module.F90readiopdata_core_module.F907e7eac0320dbba47bc1ce08f1158fd9b55be22ed1787332097000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdates to readiopdata_core and corresponding calls (#178) - readiopdata can now take in w or omega * Necessary fixes and changes to work as well as be identical to clubb readiopdata_core_module 2026-08-21 12:08:17 -05007e7eac0320dbba47bc1ce08f1158fd9b55be22edUpdates to readiopdata_core and corresponding calls (#178)editreadiopdata_core_module.F90src/Benchmark_cases/arm_0003.F90input/case_setups/bomex_model.insrc/Input_fields/CMakeLists.txtsrc/Benchmark_cases/arm_3year.F90src/Input_fields/hydrostatic_module.F90input/case_setups/BOMEX_5day_4scam.ncsrc/Input_fields/input_interpret.F90clubb_python_driver/io/sounding.pysrc/Benchmark_cases/time_dependent_input.F90input/case_setups/bomex_5day_4scam_model.insrc/readiopdata_module.F90src/readiopdata_core/readiopdata_core_module.F90clubb_python_driver/clubb_case_initalization.pysrc/Benchmark_cases/bomex.F90src/clubb_driver.F90cmake/utils/CPPDefinitions.cmakeclubb_jax/io/sounding.pysrc/Benchmark_cases/sfc_flux.F90src/Input_fields/sounding.F90utilities/case_setup/sclr_sounding_conversion.F90src/Benchmark_cases/prescribe_forcings.F90clubb_jax/clubb_case_initalization.pysrc/Benchmark_cases/arm.F90clubb_python_api/f2py_fortran_wrappers/prescribe_forcings_module_wrapper.F904aa411aa309abec014934f1589d435a83a9a4bec1787333459000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBring readiopdata changes into master (#1343) * Brought changes from readiopdata2 onto modern master branch - Currently code successfully compiles but fails to run * Fixed errors, allowing for both cases to be run and plotted! - fixed variable names in .in files * Fixes, add ifdef UWM_MISC statements, and changed alt_type/theta_type * Added l_readiopdata into ALL bomex model.in files * Code improvements - Fixed source code compilation check warnings - Checked and updated parameter order - All code I changed now has intent in/out labeled on calls - Found more instances of alt_type and theta_type to be renamed in clubb_jax and clubb_python - readiopdata_core_module.F90 moved into a folder to prepare for git subtrees * Change to be identical to sam_clubb readiopdata_core_module and a fix in arm_0003 * Fix order of operations to fix cgils cases 2026-08-21 12:30:59 -05004aa411aa309abec014934f1589d435a83a9a4becBring readiopdata changes into master (#1343)editsrc/Benchmark_cases/sfc_flux.F90editsrc/Benchmark_cases/bomex.F90editsrc/Benchmark_cases/arm.F90editclubb_python_api/f2py_fortran_wrappers/prescribe_forcings_module_wrapper.F90editsrc/Benchmark_cases/arm_0003.F90editsrc/Input_fields/CMakeLists.txteditclubb_jax/clubb_case_initalization.pyeditsrc/Input_fields/hydrostatic_module.F90addsrc/readiopdata_module.F90addinput/case_setups/bomex_5day_4scam_model.ineditsrc/Benchmark_cases/arm_3year.F90editsrc/Input_fields/input_interpret.F90editclubb_python_driver/io/sounding.pyeditsrc/Benchmark_cases/prescribe_forcings.F90editsrc/Benchmark_cases/time_dependent_input.F90addsrc/readiopdata_core/readiopdata_core_module.F90editinput/case_setups/bomex_model.ineditsrc/Input_fields/sounding.F90addinput/case_setups/BOMEX_5day_4scam.nceditutilities/case_setup/sclr_sounding_conversion.F90editclubb_python_driver/clubb_case_initalization.pyeditclubb_jax/io/sounding.pyeditcmake/utils/CPPDefinitions.cmakeeditsrc/clubb_driver.F90tests/run_silhs_test.pyutilities/create_case_namelist.pyutilities/pytests/test_create_case_namelist.pyrun_scripts/run_scm.py1f4ec8993842ad7859cefecdfab5e067b07c53fa1787333808000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPrevious commit improved the robustness of -override option and teased out a couple bugs in tests, causing them to fail. This adds the ability to specify which namelist an override goes in if there's no associated key to replace, the failing tests can be fixed by making use of this. One test is fixed here, and the other needed a change in a BFB config hosted on the jenkins server. 2026-08-21 12:36:48 -05001f4ec8993842ad7859cefecdfab5e067b07c53faPrevious commit improved the robustness of -override option and teased out a couple bugs in tests, causing them to fail. This adds the ability to specify which namelist an override goes in if there's no associated key to replace, the failing tests can be fixed by making use of this. One test is fixed here, and the other needed a change in a BFB config hosted on the jenkins server.editrun_scripts/run_scm.pyedittests/run_silhs_test.pyaddutilities/pytests/test_create_case_namelist.pyeditutilities/create_case_namelist.pysrc/readiopdata_module.F901b17c7eb82913aa29b80cb94f5280c9a81fb162f1787335615000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving unused dependency that can cause compilation to fail - seems compiler/build system dependent 2026-08-21 13:06:55 -05001b17c7eb82913aa29b80cb94f5280c9a81fb162fRemoving unused dependency that can cause compilation to fail - seems compiler/build system dependenteditsrc/readiopdata_module.F90src/readiopdata_core/readiopdata_core_module.F90ec70668f175a08f982ca25797a9c7367f10e03d61787335778000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduRemoved readiopdata_core to prepare for git subtrees 2026-08-21 13:09:38 -0500ec70668f175a08f982ca25797a9c7367f10e03d6Removed readiopdata_core to prepare for git subtreesdeletesrc/readiopdata_core/readiopdata_core_module.F90readiopdata_core_module.F90e49f15da4a620fb2c6af3b83858ca3a692847f541787339796000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line to trigger gitUpdateScripts 2026-08-21 14:16:36 -0500e49f15da4a620fb2c6af3b83858ca3a692847f54Add blank line to trigger gitUpdateScriptseditreadiopdata_core_module.F901e0e2db32c6deda3a17097f6bd47ca31bed9c7491787339851000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove blank line to trigger nightly tests and gitUpdateScripts 2026-08-21 14:17:31 -05001e0e2db32c6deda3a17097f6bd47ca31bed9c749Remove blank line to trigger nightly tests and gitUpdateScriptsgithttp://carson.math.uwm.edu/jenkins/user/isenfireldcisenfireldchttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/hancockTrevor 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Dash workflows and broker services (#1342) * Improve Dash workflows and broker services Streamline run telemetry and output-scoped admission, add build selection and pyplotgen export support, improve profile and tuning workflows, and make Tune failures column-local and recoverable. * A little cleanup * Simplification in SILHS to keep errors silent in debug=-1 mode, and removing accidental change in advance_clubb_core.F90 * Little dash fix and comment improvement * Replacing scipy usage in the adam initial point choosing with numpy * Removing l_rtm_nudge from flag set file used by run_bindiff_w_flags tests. This is technically a model_setting, so it shouldn't be here, and is already enabled by cgils_s12, so will remain tested in at least one case. 2026-08-20 16:20:25 -05001db1e01971bca05b2e95037f97c94aae0a827a50Improve Dash workflows and broker services 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profiling tab (#1340) * Adding dash time to profile code * Little fix to benchmark output 2026-08-13 19:57:10 -0500e0ffe41f4e282a8f1686d43a2d7c881327408fe1Dash profiling tab 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Hueblerhuebler@uwm.eduDash improvement to how dash+broker is managed, also adding config save button to run tab 2026-08-11 12:28:48 -0500a2e1a527c4dec20d8256987ca0f93d97b40e2515Dash improvement to how dash+broker is managed, also adding config save button to run 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Hueblerhuebler@uwm.eduLittle bug fix for new save config feature 2026-08-11 12:44:42 -0500bdb4814bde210083394109eeecd6f61abf184bb2Little bug fix for new save config featureeditdash_app/run_tab/callbacks_settings.pyeditdash_app/pytests/test_tunable_config_save.pyeditdash_app/run_tab/layout.pyeditdash_app/assets/37_workspace_persistence.jstests/run_clubb_conv_test.pytests/README992b33894af364d6a4b1d73923529dde389015b91786471215000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduLittle improvement to convergence test - it makes nicer plots and reports the 4 and 8 point fitted slopes. 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The pass/fail criteria remains unchanged, so this is just a diagnostic improvementedittests/run_clubb_conv_test.pyedittests/READMEgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse562http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/562/560http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/560/Started by an SCM change560c292c6c30e74faab2dc44ba5185d8885aa2f29d6c292c6c30e74faab2dc44ba5185d8885aa2f29d6refs/remotes/origin/masterc292c6c30e74faab2dc44ba5185d8885aa2f29d6c292c6c30e74faab2dc44ba5185d8885aa2f29d6refs/remotes/origin/masterc292c6c30e74faab2dc44ba5185d8885aa2f29d6c292c6c30e74faab2dc44ba5185d8885aa2f29d6refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5601521413107644clubb_BFB_r8029_flags_gfortran_test #560560false5607048SUCCESS1786436827178http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/560/dash_app/pytests/test_fill_holes_viewer.pysrc/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_wp2_wp3_module.F90dash_app/misc_tab/fill_holes_viewer/callbacks.pyinput/stats/all_stats.indash_app/misc_tab/fill_holes_viewer/figures.pydash_app/misc_tab/fill_holes_viewer/__init__.pydash_app/misc_tab/fill_holes_viewer/analysis.pydash_app/fill_holes.pydash_app/misc_tab/fill_holes_viewer/layout.pydash_app/assets/23_fill_holes_viewer.csssrc/CLUBB_core/advance_xp2_xpyp_module.F90c292c6c30e74faab2dc44ba5185d8885aa2f29d61786417963000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFill holes tab (#1339) * New fill holes misc tab, requires some new stats outputs, but I think we can remove some * Small UI improvements and removing unnecessary new stats * Removing old fill holes dash file 2026-08-10 22:12:43 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See https://github.com/larson-group/clubb/pull/1336 for 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dash_app/pytests/test_runtime_logging.pyedittests/run_jax_vs_fortran_cases.pyedittuner/sample_history.pyeditdash_app/assets/34_run_param_clientside.jsadddash_app/pytests/test_runtime.pyaddutilities/pytests/test_create_multi_col_params.pyeditrun_scripts/run_scm_loss.pyadddash_app/misc_tab/sam_w_rt_neighborhood/tab.pyeditrun_scripts/README.mdadddash_app/misc_tab/mixing_length_trajectories/figures.pyadddash_app/tune_tab/callbacks_workspaces.pyadddash_app/pytests/test_run_callbacks_settings.pyeditlaunch_dashboard.shadddash_app/reports_tab/static.pyadddash_app/shared/dashboard_registry.pyadddash_app/agent_integration/client.pyadddash_app/misc_tab/mixing_length_trajectories/analysis.pyeditdash_app/plot_tab/state.pyeditdash_app/assets/31_plots_ui_resize.jsadddash_app/shared/__init__.pyeditdash_app/run_tab/callbacks_runs.pyeditutilities/benchmark_converter.pyeditclubb_python_api/clubb_f2py.pyfadddash_app/pytests/test_dashboard_lifecycle.pyeditjenkins_tests/clubb_new_tuner_test/Jenkinsfileadddash_app/plot_tab/plot_types/custom_plot.pyadddash_app/shared/tunable_configs.pyeditAGENTS.mdadddoc/reports/sam-heatmap-coloring-examples-20h30/generate_rc_vs_rt_example.pyadddash_app/shared/runtime_logging.pyeditdash_app/plot_tab/layout.pyaddtests/run_clubb_settings_validation_test.pyadddash_app/tutorial_tab/adg1_gaussian_explorer.pyeditdash_app/compile_tab/callbacks.pyaddtuner/workspaces.pyeditdash_app/run_tab/tab.pyeditclubb_jax/clubb_case_initalization.pyeditutilities/create_case_namelist.pyaddutilities/clubb_settings_validation.pyadddash_app/assets/37_workspace_persistence.jsedit.gitignoreaddutilities/pytests/test_clubb_settings_resolution.pyeditclubb_python_driver/clubb_case_initalization.pyeditdash_app/assets/32_plots_constant_param_rows.jsadddash_app/misc_tab/tab.pyadddash_app/misc_tab/mixing_length_trajectories/callbacks.pyeditdash_app/plot_tab/plot_types/budget_plot.pyadddash_app/pytests/test_taylor_window_display.pyaddtuner/pytests/test_parameter_ranges.pyadddash_app/agent_integration/dashboard_lifecycle.pyadddash_app/tutorial_tab/clubb_equations_demo/__init__.pyadddash_app/tutorial_tab/welcome.pyaddtuner/parameter_ranges.pyadddash_app/shared/components.pyaddtuner/presets.jsoneditdash_app/tune_tab/tab.pyeditdash_app/README.mdeditdash_app/assets/13_tab_tune_theme.cssadddash_app/pytests/test_scm_override.pyeditdash_app/plot_tab/plot_types/profile_plot.pyadddash_app/pytests/test_param_disclosures.pyeditdash_app/run_tab/callbacks_settings.pyedittuner/taylor_metrics.pyadddash_app/assets/05_shared_modal.cssadddash_app/tutorial_tab/layout.pyedittests/run_python_vs_fortran_cases.pyedittuner/job_runtime.pyadddash_app/services/__init__.pyadddash_app/services/profiles.pyadddash_app/pytests/test_agent_services.pyadddash_app/pytests/test_agent_integration.pyadddash_app/pytests/test_bivariate_heatmap.pyadddash_app/assets/25_tab_misc.csseditdash_app/run_tab/namelist.pyeditdash_app/run_tab/config_state.pyedittests/READMEeditdash_app/tune_tab/callbacks_runs.pyeditdash_app/app.pyadddash_app/misc_tab/mixing_length_trajectories/__init__.pyeditdash_app/tune_tab/layout.pyadddoc/reports/README.mdadddash_app/pytests/test_misc_tab.pyadddash_app/pytests/test_output_directory_picker.pyeditdash_app/compile_tab/runtime.pyeditsrc/clubb_driver.F90editLLM_prompts/update_host_models_after_clubb_changes.mdadddash_app/misc_tab/layout.pyaddutilities/les_chi_moments.pyaddutilities/pytests/test_output_paths.pyadddoc/reports/sam-heatmap-coloring-examples-20h30/report.htmleditdash_app/plot_tab/plot_types/specs.pydeletedash_app/compile_tab/test_compile_tab_build_status.pyadddash_app/pytests/test_run_runtime.pyadddoc/reports/sam-heatmap-coloring-examples-20h30/data/raw-sam-wrt-rc-vs-rt.jsoneditclubb_python_api/clubb_python/clubb_api.pyeditjenkins_tests/clubb_driver_test/Jenkinsfileeditdash_app/plot_tab/plot_types/base_plot.pyadddash_app/shared/output_discovery.pyeditdash_app/plot_tab/benchmark_overlay.pyadddash_app/shared/runtime.pyadddash_app/pytests/test_state_persistence.pyadddash_app/misc_tab/sam_w_rt_neighborhood/generation.pyeditdash_app/DEVELOPMENT.mdeditdash_app/tune_tab/discovery.pyeditdash_app/requirements.txtadddash_app/agent_integration/mcp_server.pyadddash_app/persistence.pyadddash_app/services/jobs.pyeditdash_app/assets/14_tab_compile_theme.cssadddash_app/misc_tab/mixing_length_trajectories/layout.pyeditsrc/CLUBB_core/parameters_tunable.F90adddash_app/tutorial_tab/__init__.pyeditdash_app/plot_tab/callbacks_params.pyeditdash_app/run_tab/runtime.pyeditrun_scripts/run_tuner.pyeditdash_app/plot_tab/callbacks_grid.pyadddash_app/pytests/test_agent_tuning.pyadddash_app/pytests/test_equations.pyadddoc/reports/sam-heatmap-coloring-examples-20h30/data/raw-sam-wrt-color-signals.jsonedittuner/case_defaults.jsoneditclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyadddash_app/pytests/test_agent_plot_actions.pyadddash_app/pytests/test_tutorial_tab.pyadddash_app/tutorial_tab/clubb_equations_demo/components.pyeditdash_app/compile_tab/layout.pyeditLLM_prompts/SHORTCUTS.mdeditjenkins_tests/clubb_python_test/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse559http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/559/557http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/557/Started by an SCM change557034f61908b84f2574a06cc7da3db70d50696e69d034f61908b84f2574a06cc7da3db70d50696e69drefs/remotes/origin/master034f61908b84f2574a06cc7da3db70d50696e69d034f61908b84f2574a06cc7da3db70d50696e69drefs/remotes/origin/master034f61908b84f2574a06cc7da3db70d50696e69d034f61908b84f2574a06cc7da3db70d50696e69drefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#557109342107644clubb_BFB_r8029_flags_gfortran_test #557557false5576711SUCCESS1785313626333http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/557/READMEc15480a71ed50936412eb66827a86bf69c490a371785258857000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRecently a commit removed the l_tke_aniso flag, which is BFB unless that flag is enabled. That flag was used in the clubb_BFB_varying_flags_gfortran_test, causing it to fail even though we don't care since it only failed for a removed flag, so RESOLVED:8ab3902e812c2883976b4f1f57c085d682666d92 2026-07-28 12:14:17 -0500c15480a71ed50936412eb66827a86bf69c490a37Recently a commit removed the l_tke_aniso flag, which is BFB unless that flag is enabled. That flag was used in the clubb_BFB_varying_flags_gfortran_test, causing it to fail even though we don't care since it only failed for a removed flag, so RESOLVED:8ab3902e812c2883976b4f1f57c085d682666d92editREADMEjenkins_tests/clubb_plot_solver_compare/Jenkinsfile034f61908b84f2574a06cc7da3db70d50696e69d1785260769000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThe old mixing length calculation seems to be making dycoms2_rf02 fail when using the bicgstab solver. This case was always unstable with bicgstab, so it seemed more like luck before that it was passing. This change just removes the failed output data to prevent pyplotgen from crashing 2026-07-28 12:46:09 -0500034f61908b84f2574a06cc7da3db70d50696e69dThe old mixing length calculation seems to be making dycoms2_rf02 fail when using the bicgstab solver. This case was always unstable with bicgstab, so it seemed more like luck before that it was passing. This change just removes the failed output data to prevent pyplotgen from crashingeditjenkins_tests/clubb_plot_solver_compare/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse558http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/558/556http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/556/Started by an SCM change556765ae7c30cda88e01b27cd1ee4277d54e4fcb752765ae7c30cda88e01b27cd1ee4277d54e4fcb752refs/remotes/origin/master765ae7c30cda88e01b27cd1ee4277d54e4fcb752765ae7c30cda88e01b27cd1ee4277d54e4fcb752refs/remotes/origin/master765ae7c30cda88e01b27cd1ee4277d54e4fcb752765ae7c30cda88e01b27cd1ee4277d54e4fcb752refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5561232138107644clubb_BFB_r8029_flags_gfortran_test #556556false5566622SUCCESS1785227229682http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/556/experimental/experimental_pdfs/doc/trivariate_transport_method_report.mdexperimental/experimental_pdfs/python/report_scripts/pdf10_arm_rt_thl_structure/generate_report.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_mixed_moment_allocation.pyexperimental/experimental_pdfs/python/report_scripts/directional_lscale_pdf_coherence/generate_report.pyexperimental/experimental_pdfs/python/report_scripts/generate_pdf10_arm_noise_report.pyexperimental/experimental_pdfs/README.mdexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_refresh_pdf9_parcel_ensemble_lab.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_transport_2g_prototype.pyexperimental/experimental_pdfs/src/CLUBB_core/pdf_closure_module.F90experimental/experimental_pdfs/python/dash_additions/utilities/refresh_pdf9_parcel_ensemble_lab.pyexperimental/experimental_pdfs/doc/pdf_method_investigation_report.mdexperimental/experimental_pdfs/src/G_unit_test_types/trivariate_transport_pdf_tests.F90experimental/experimental_pdfs/python/dash_additions/utilities/generate_pdf9_parcel_ensemble_diagnostics.pyexperimental/experimental_pdfs/python/report_scripts/pdf10_mixed_third_moment_decision/generate_report.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_vertical_coherence.pyexperimental/experimental_pdfs/python/report_scripts/pdf10_flux_alignment_effect/generate_report.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/trivariate_transport_sam_lab.pyexperimental/experimental_pdfs/src/CLUBB_core/trivariate_transport_pdf.F90experimental/experimental_pdfs/python/dash_additions/misc_labs/vertical_coherence.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/pdf9_parcel_ensemble.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/sam_lscale.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/transport_2g_prototype.pyexperimental/experimental_pdfs/python/report_scripts/pdf10_arm_xp3_budget_audit/generate_pdf10_arm_xp3_budget_report.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/vertically_coherent_transport_sam_lab.pyexperimental/experimental_pdfs/src/CLUBB_core/pdf_9_module.F90experimental/experimental_pdfs/python/report_scripts/pdf10_arm_scalar_third_moment_noise_audit/generate_pdf10_arm_noise_report.pyexperimental/experimental_pdfs/src/CLUBB_core/advance_xp3_module.F90experimental/experimental_pdfs/python/report_scripts/generate_pdf10_arm_xp3_budget_report.pyexperimental/experimental_pdfs/python/dash_additions/src/pdf_9_module.F90experimental/experimental_pdfs/doc/vertically_coherent_pdf_diagnosis.mdexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_pdf9_parcel_ensemble_report.pyexperimental/experimental_pdfs/python/dash_additions/misc_labs/__init__.pybf9986a7c169085e4f89733f84407bd2220759341785203996000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduArchiving experimental files that were used to explore some crazy PDF diagnosis methods. Much of this is sporatic LLM generated code and reports. These two methods were tested and did work well when using LES input to model the PDF, but were extemely noisy and unstable in free running clubb. The 'parcel tracking' one performs a mixing-length-like calculation to evolve a persistent 3rd gaussian, then computes a residual ADG1 pair to balance everything out and adhere to clubbs predicted moments. The second one (dubbed trivariate even though they're technically all trivariate) is a 2 Gaussian method that allows for many more degrees of freedom in how we place Gaussian centers and allocate covariance - it does this in part by taking into account rt and thl skewness, which require calculating rtp3 and thlp3. This trivate actually does really well when modelled using LES data, but it's heavy reliance on xp3 terms makes it extremely noisy and bad in clubb - this is why this code also includes a much more sophisticated (and barely tested) advance_xp3_module.F90, as an attempt to make this less worse for the trivariate pdf. 2026-07-27 20:59:56 -0500bf9986a7c169085e4f89733f84407bd222075934Archiving experimental files that were used to explore some crazy PDF diagnosis methods. Much of this is sporatic LLM generated code and reports. These two methods were tested and did work well when using LES input to model the PDF, but were extemely noisy and unstable in free running clubb. The 'parcel tracking' one performs a mixing-length-like calculation to evolve a persistent 3rd gaussian, then computes a residual ADG1 pair to balance everything out and adhere to clubbs predicted moments. The second one (dubbed trivariate even though they're technically all trivariate) is a 2 Gaussian method that allows for many more degrees of freedom in how we place Gaussian centers and allocate covariance - it does this in part by taking into account rt and thl skewness, which require calculating rtp3 and thlp3. This trivate actually does really well when modelled using LES data, but it's heavy reliance on xp3 terms makes it extremely noisy and bad in clubb - this is why this code also includes a much more sophisticated (and barely tested) advance_xp3_module.F90, as an attempt to make this less worse for the trivariate pdf.addexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_vertical_coherence.pyaddexperimental/experimental_pdfs/python/report_scripts/generate_pdf10_arm_xp3_budget_report.pyaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/__init__.pyaddexperimental/experimental_pdfs/src/CLUBB_core/pdf_9_module.F90addexperimental/experimental_pdfs/python/dash_additions/utilities/generate_pdf9_parcel_ensemble_diagnostics.pyaddexperimental/experimental_pdfs/python/report_scripts/pdf10_arm_scalar_third_moment_noise_audit/generate_pdf10_arm_noise_report.pyaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_pdf9_parcel_ensemble_report.pyaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/trivariate_transport_sam_lab.pyaddexperimental/experimental_pdfs/src/CLUBB_core/pdf_closure_module.F90addexperimental/experimental_pdfs/python/report_scripts/directional_lscale_pdf_coherence/generate_report.pyaddexperimental/experimental_pdfs/python/report_scripts/pdf10_arm_rt_thl_structure/generate_report.pyaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_refresh_pdf9_parcel_ensemble_lab.pyaddexperimental/experimental_pdfs/src/G_unit_test_types/trivariate_transport_pdf_tests.F90addexperimental/experimental_pdfs/doc/trivariate_transport_method_report.mdaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/sam_lscale.pyaddexperimental/experimental_pdfs/doc/pdf_method_investigation_report.mdaddexperimental/experimental_pdfs/python/dash_additions/utilities/refresh_pdf9_parcel_ensemble_lab.pyaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_transport_2g_prototype.pyaddexperimental/experimental_pdfs/src/CLUBB_core/trivariate_transport_pdf.F90addexperimental/experimental_pdfs/src/CLUBB_core/advance_xp3_module.F90addexperimental/experimental_pdfs/doc/vertically_coherent_pdf_diagnosis.mdaddexperimental/experimental_pdfs/python/report_scripts/pdf10_arm_xp3_budget_audit/generate_pdf10_arm_xp3_budget_report.pyaddexperimental/experimental_pdfs/python/report_scripts/generate_pdf10_arm_noise_report.pyaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/transport_2g_prototype.pyaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/tests/test_mixed_moment_allocation.pyaddexperimental/experimental_pdfs/python/report_scripts/pdf10_mixed_third_moment_decision/generate_report.pyaddexperimental/experimental_pdfs/README.mdaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/pdf9_parcel_ensemble.pyaddexperimental/experimental_pdfs/python/dash_additions/src/pdf_9_module.F90addexperimental/experimental_pdfs/python/dash_additions/misc_labs/vertical_coherence.pyaddexperimental/experimental_pdfs/python/report_scripts/pdf10_flux_alignment_effect/generate_report.pyaddexperimental/experimental_pdfs/python/dash_additions/misc_labs/vertically_coherent_transport_sam_lab.pysrc/CLUBB_core/advance_xp3_module.F90765ae7c30cda88e01b27cd1ee4277d54e4fcb7521785204361000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug in advance_xp3 code. This is BFB because advance_xp3 is hardcoded to false. 2026-07-27 21:06:01 -0500765ae7c30cda88e01b27cd1ee4277d54e4fcb752Fixing bug in advance_xp3 code. This is BFB because advance_xp3 is hardcoded to false.editsrc/CLUBB_core/advance_xp3_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse557http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/557/555http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/555/Started by an SCM change5557e9b710922cae26f2bcaf92b858ba00bc6b5f0407e9b710922cae26f2bcaf92b858ba00bc6b5f040refs/remotes/origin/master7e9b710922cae26f2bcaf92b858ba00bc6b5f0407e9b710922cae26f2bcaf92b858ba00bc6b5f040refs/remotes/origin/master7e9b710922cae26f2bcaf92b858ba00bc6b5f0407e9b710922cae26f2bcaf92b858ba00bc6b5f040refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5551416597107644clubb_BFB_r8029_flags_gfortran_test #555555false5556524SUCCESS1785054427669http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/555/input/parameter_and_flag_configs/default/configurable_model_flags.insrc/CLUBB_core/model_flags.F90input/flag_sets/run_bindiff_w_flags_config_core_flags.json02babc6b5a46bda3075bf071426fa20bf200a43b1785002743000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSetting l_diag_Lscale_from_tau to false by default, and changing it to true in the flag set list the run_bindiff_w_flags test uses so that we keep testing the tau code nightly. This flag changes answers, so this is BIT_CHANGING. 2026-07-25 13:05:43 -050002babc6b5a46bda3075bf071426fa20bf200a43bSetting l_diag_Lscale_from_tau to false by default, and changing it to true in the flag set list the run_bindiff_w_flags test uses so that we keep testing the tau code nightly. This flag changes answers, so this is BIT_CHANGING.editsrc/CLUBB_core/model_flags.F90editinput/parameter_and_flag_configs/default/configurable_model_flags.ineditinput/flag_sets/run_bindiff_w_flags_config_core_flags.jsontests/run_python_vs_fortran_cases.pyafbbe1126523c6ff7a4bb8091f72a242280490ba1785004898000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSetting l_diag_Lscale_from_tau to false caused dycoms2_rf01_fixed_sst to start failing the python vs fortran test. The differences were small and occured at a late timestep, so to fix the test I put a limiter on the number of timesteps the test runs. 2026-07-25 13:41:38 -0500afbbe1126523c6ff7a4bb8091f72a242280490baSetting l_diag_Lscale_from_tau to false caused dycoms2_rf01_fixed_sst to start failing the python vs fortran test. The differences were small and occured at a late timestep, so to fix the test I put a limiter on the number of timesteps the test runs.edittests/run_python_vs_fortran_cases.pyinput/parameter_and_flag_configs/coriolis_cases/atex_long_parameters.ininput/parameter_and_flag_configs/e3sm_maint32/tunable_parameters.insrc/CLUBB_core/advance_wp2_wp3_module.F90input/flag_sets/run_bindiff_w_flags_config_core_flags.jsoninput/parameter_and_flag_configs/coriolis_cases/coriolis_test_parameters.insrc/clubb_tuner.F90input/parameter_and_flag_configs/Lscale/configurable_model_flags.insrc/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/model_flags.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90src/G_unit_test_types/pdf_parameter_tests.F90clubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pysrc/CLUBB_core/parameters_tunable.F90clubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyinput/case_setups/dycoms2_rf02_nd_model.LR.inclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90src/CLUBB_core/clip_explicit.F90input/parameter_and_flag_configs/tauMatchLscale/configurable_model_flags.ininput/parameter_and_flag_configs/e3sm_maint32/maint32_defaults_report.mdsrc/CLUBB_core/advance_xm_wpxp_module.F90clubb_python_driver/clubb_case_initalization.pyclubb_python_api/tests/test_advance_core_subs.pyinput/case_setups/dycoms2_rf02_so_model.LR.ininput/case_setups/dycoms2_rf02_ds_model.HR.ininput/case_setups/dycoms2_rf02_do_model.HR.inclubb_python_api/clubb_f2py.pyfinput/case_setups/dycoms2_rf02_do_model.LR.ininput/parameter_and_flag_configs/e3sm_maint32/configurable_model_flags.ininput/parameter_and_flag_configs/default/configurable_model_flags.inclubb_jax/advance_clubb_core.pyinput/case_setups/dycoms2_rf02_so_model.HR.inclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyinput/parameter_and_flag_configs/compatible_r8029/configurable_model_flags.insrc/Microphys/pdf_hydromet_microphys_wrapper.F90input/parameter_and_flag_configs/e3sm/configurable_model_flags.inclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90input/flag_sets/run_bindiff_w_flags_config_host_flags.jsonclubb_jax/clubb_case_initalization.pyinput/case_setups/READMEinput/parameter_and_flag_configs/e3sm/tunable_parameters.inclubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90src/G_unit_test_types/spurious_source_test.F90input/parameter_and_flag_configs/default/tunable_parameters.inclubb_python_api/tests/test_init_sequence.pyinput/case_setups/dycoms2_rf02_nd_model.HR.insrc/CLUBB_core/advance_clubb_core_module.F90input/parameter_and_flag_configs/coriolis_cases/ekman_parameters.insrc/CLUBB_core/constants_clubb.F90src/clubb_driver.F90input/case_setups/dycoms2_rf02_ds_model.LR.ininput/parameter_and_flag_configs/Lscale/tunable_parameters.ininput/parameter_and_flag_configs/compatible_r8029/tunable_parameters.inclubb_python_api/clubb_python/derived_types/config_flags.pyclubb_python_api/f2py_fortran_wrappers/model_flags_wrapper.F908ab3902e812c2883976b4f1f57c085d682666d921785005093000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving the l_tke_aniso flag 2026-07-25 13:44:53 -05008ab3902e812c2883976b4f1f57c085d682666d92Removing the l_tke_aniso flageditsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/clip_explicit.F90editsrc/CLUBB_core/model_flags.F90editinput/parameter_and_flag_configs/e3sm_maint32/maint32_defaults_report.mdeditinput/case_setups/dycoms2_rf02_do_model.LR.ineditinput/case_setups/dycoms2_rf02_so_model.HR.ineditinput/flag_sets/run_bindiff_w_flags_config_host_flags.jsoneditinput/parameter_and_flag_configs/compatible_r8029/tunable_parameters.ineditsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_jax/clubb_case_initalization.pyeditinput/case_setups/dycoms2_rf02_ds_model.HR.ineditclubb_python_api/clubb_f2py.pyfeditsrc/clubb_tuner.F90editclubb_jax/advance_clubb_core.pyeditinput/case_setups/READMEeditinput/parameter_and_flag_configs/coriolis_cases/ekman_parameters.ineditsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditsrc/CLUBB_core/advance_xm_wpxp_module.F90editclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/parameters_tunable.F90editinput/parameter_and_flag_configs/e3sm/tunable_parameters.ineditclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90editinput/parameter_and_flag_configs/Lscale/configurable_model_flags.ineditinput/case_setups/dycoms2_rf02_so_model.LR.ineditinput/parameter_and_flag_configs/default/tunable_parameters.ineditclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editinput/parameter_and_flag_configs/tauMatchLscale/configurable_model_flags.ineditclubb_python_api/clubb_python/derived_types/config_flags.pyeditinput/parameter_and_flag_configs/compatible_r8029/configurable_model_flags.ineditinput/parameter_and_flag_configs/e3sm/configurable_model_flags.ineditsrc/clubb_driver.F90editinput/parameter_and_flag_configs/default/configurable_model_flags.ineditinput/case_setups/dycoms2_rf02_ds_model.LR.ineditclubb_python_driver/clubb_case_initalization.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditinput/parameter_and_flag_configs/Lscale/tunable_parameters.ineditinput/parameter_and_flag_configs/e3sm_maint32/configurable_model_flags.ineditinput/case_setups/dycoms2_rf02_nd_model.LR.ineditinput/case_setups/dycoms2_rf02_do_model.HR.ineditclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditsrc/G_unit_test_types/pdf_parameter_tests.F90editclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/tests/test_init_sequence.pyeditclubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90editsrc/G_unit_test_types/spurious_source_test.F90editclubb_python_api/f2py_fortran_wrappers/model_flags_wrapper.F90editinput/parameter_and_flag_configs/coriolis_cases/coriolis_test_parameters.ineditinput/case_setups/dycoms2_rf02_nd_model.HR.ineditclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditinput/parameter_and_flag_configs/coriolis_cases/atex_long_parameters.ineditinput/parameter_and_flag_configs/e3sm_maint32/tunable_parameters.ineditinput/flag_sets/run_bindiff_w_flags_config_core_flags.jsoneditsrc/CLUBB_core/constants_clubb.F90input/case_setups/bomex_model.ininput/case_setups/fire_model.ininput/case_setups/dycoms2_rf01_model.ininput/case_setups/dycoms2_rf02_ds_model.ininput/case_setups/rico_silhs_model.ininput/case_setups/gabls2_model.ininput/case_setups/cgils_s12_model.ininput/case_setups/rico_model.ininput/case_setups/cgils_s11_model.ininput/case_setups/arm_model.ininput/case_setups/dycoms2_rf02_do_model.ininput/case_setups/neutral_model.ininput/case_setups/mpace_b_model.ininput/case_setups/dycoms2_rf02_nd_model.ininput/case_setups/cgils_s6_model.ininput/case_setups/twp_ice_model.ininput/case_setups/arm_97_model.ininput/case_setups/atex_long_model.ininput/case_setups/dycoms2_rf02_so_model.ininput/case_setups/lba_model.ininput/case_setups/atex_model.ininput/case_setups/gabls3_night_model.ininput/case_setups/wangara_model.ininput/case_setups/dycoms2_rf01_fixed_sst_model.inc743a1427c73d47a5515a8d34c6de40cc266a3fd1785011358000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking les paths in _model.in files correct 2026-07-25 15:29:18 -0500c743a1427c73d47a5515a8d34c6de40cc266a3fdMaking les paths in _model.in files correcteditinput/case_setups/cgils_s11_model.ineditinput/case_setups/fire_model.ineditinput/case_setups/dycoms2_rf02_do_model.ineditinput/case_setups/neutral_model.ineditinput/case_setups/dycoms2_rf02_ds_model.ineditinput/case_setups/mpace_b_model.ineditinput/case_setups/dycoms2_rf01_model.ineditinput/case_setups/rico_silhs_model.ineditinput/case_setups/atex_long_model.ineditinput/case_setups/atex_model.ineditinput/case_setups/bomex_model.ineditinput/case_setups/dycoms2_rf01_fixed_sst_model.ineditinput/case_setups/dycoms2_rf02_nd_model.ineditinput/case_setups/gabls2_model.ineditinput/case_setups/arm_97_model.ineditinput/case_setups/cgils_s6_model.ineditinput/case_setups/dycoms2_rf02_so_model.ineditinput/case_setups/lba_model.ineditinput/case_setups/twp_ice_model.ineditinput/case_setups/wangara_model.ineditinput/case_setups/rico_model.ineditinput/case_setups/gabls3_night_model.ineditinput/case_setups/cgils_s12_model.ineditinput/case_setups/arm_model.inLLM_prompts/update_host_models_after_clubb_changes.mdLLM_prompts/SHORTCUTS.md7e9b710922cae26f2bcaf92b858ba00bc6b5f0401785030901000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding prompt to automate updating host models 2026-07-25 20:55:01 -05007e9b710922cae26f2bcaf92b858ba00bc6b5f040Adding prompt to automate updating host modelseditLLM_prompts/SHORTCUTS.mdaddLLM_prompts/update_host_models_after_clubb_changes.mdgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse556http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/556/554http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/554/Started by an SCM change5540ccbf4f61f326437ea971ff5eca1eb570e8e47110ccbf4f61f326437ea971ff5eca1eb570e8e4711refs/remotes/origin/master0ccbf4f61f326437ea971ff5eca1eb570e8e47110ccbf4f61f326437ea971ff5eca1eb570e8e4711refs/remotes/origin/master0ccbf4f61f326437ea971ff5eca1eb570e8e47110ccbf4f61f326437ea971ff5eca1eb570e8e4711refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#55488723107644clubb_BFB_r8029_flags_gfortran_test #554554false5546427SUCCESS1784622430999http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/554/CMakeLists.txt0ccbf4f61f326437ea971ff5eca1eb570e8e47111784573250000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClarify that the SILHS preprocessor flag in CLUBB is connected to the same flag in sam_clubb. 2026-07-20 13:47:30 -05000ccbf4f61f326437ea971ff5eca1eb570e8e4711Clarify that the SILHS preprocessor flag in CLUBB is connected to the same flag in sam_clubb.editCMakeLists.txtgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse555http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/555/553http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/553/Started by an SCM change5535d01201f199f1883ab7f835dc441fbafdb686d675d01201f199f1883ab7f835dc441fbafdb686d67refs/remotes/origin/master5d01201f199f1883ab7f835dc441fbafdb686d675d01201f199f1883ab7f835dc441fbafdb686d67refs/remotes/origin/master5d01201f199f1883ab7f835dc441fbafdb686d675d01201f199f1883ab7f835dc441fbafdb686d67refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#553316017107644clubb_BFB_r8029_flags_gfortran_test #553553false5536353SUCCESS1784104026472http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/553/CMakeLists.txt84b8d6700a274f2dcec4df60a67207e2808308e41784054609000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduFixing SILHS usage so clubb/sam_clubb are compatible 2026-07-14 13:43:29 -050084b8d6700a274f2dcec4df60a67207e2808308e4Fixing SILHS usage so clubb/sam_clubb are compatibleeditCMakeLists.txtsrc/Microphys/Morrison_microphys/microphysics.F905d01201f199f1883ab7f835dc441fbafdb686d671784065113000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduFixing error/diff with morrison microphysics 2026-07-14 16:38:33 -05005d01201f199f1883ab7f835dc441fbafdb686d67Fixing error/diff with morrison microphysicseditsrc/Microphys/Morrison_microphys/microphysics.F90githttp://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockfalse554http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/554/552http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/552/Started by an SCM change552406c3636fd5626566f8c184c71152f19157606b5406c3636fd5626566f8c184c71152f19157606b5refs/remotes/origin/master406c3636fd5626566f8c184c71152f19157606b5406c3636fd5626566f8c184c71152f19157606b5refs/remotes/origin/master406c3636fd5626566f8c184c71152f19157606b5406c3636fd5626566f8c184c71152f19157606b5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#55298409107644clubb_BFB_r8029_flags_gfortran_test #552552false5526269SUCCESS1784017626681http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/552/microphysics.F9053dc29afa7900265d39acc9ed78e302153d2e9181783949205000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduRemoved option to disable silhs 2026-07-13 08:26:45 -050053dc29afa7900265d39acc9ed78e302153d2e918Removed option to disable silhseditmicrophysics.F90src/Microphys/Morrison_microphys/microphysics.F90c75d8e56d95be1eb4a5374351e1196ccb4aaa7281783949393000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduRevert changes to src/Microphys/Morrison_microphys/microphysics.F90 - Changes to this file are supposed to be made in sam_clubb 2026-07-13 08:29:53 -0500c75d8e56d95be1eb4a5374351e1196ccb4aaa728Revert changes to src/Microphys/Morrison_microphys/microphysics.F90editsrc/Microphys/Morrison_microphys/microphysics.F90githttp://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockfalse553http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/553/551http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/551/Started by an SCM 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(#1330)editsrc/Radiation/BUGSrad/kinds.F90editcompile.pyeditcmake/utils/CPPDefinitions.cmakeeditdash_app/compile_tab/runtime.pyeditdash_app/compile_tab/layout.pysrc/Input_fields/stat_file_utils.F90dash_app/compile_tab/discovery.pysrc/Input_fields/CMakeLists.txtdash_app/compile_tab/runtime.pyBUILD.mddash_app/compile_tab/test_compile_tab_build_status.pysrc/Input_fields/input_fields.F90CMakeLists.txtsrc/clubb_driver.F90src/Input_fields/input_netcdf.F90cmake/utils/CPPDefinitions.cmakesrc/CLUBB_core/CMakeLists.txtREADMEsrc/CMakeLists.txtsrc/error.F90clubb_python_api/CMakeLists.txtcompile.pya9a078699bbeabdded46e97e0948f403313218661783712742000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoved option to disable netcdf (#1331) 2026-07-10 14:45:42 -0500a9a078699bbeabdded46e97e0948f40331321866Removed option to disable netcdf (#1331)editCMakeLists.txteditsrc/CMakeLists.txteditdash_app/compile_tab/runtime.pyeditsrc/Input_fields/input_netcdf.F90editsrc/Input_fields/stat_file_utils.F90editdash_app/compile_tab/test_compile_tab_build_status.pyeditsrc/Input_fields/CMakeLists.txteditclubb_python_api/CMakeLists.txteditcmake/utils/CPPDefinitions.cmakeeditcompile.pyeditBUILD.mdeditsrc/Input_fields/input_fields.F90editsrc/error.F90editsrc/CLUBB_core/CMakeLists.txteditsrc/clubb_driver.F90editREADMEeditdash_app/compile_tab/discovery.pysrc/generalized_grid_test.F90src/Microphys/Morrison_microphys/microphysics.F90dash_app/compile_tab/runtime.pysrc/SILHS/silhs_api_module.F90BUILD.mddash_app/compile_tab/test_compile_tab_build_status.pysrc/SILHS/latin_hypercube_driver_module.F90src/Microphys/pdf_hydromet_microphys_wrapper.F90CMakeLists.txtsrc/Microphys/lh_microphys_driver_module.F90src/clubb_driver.F90cmake/utils/CPPDefinitions.cmakesrc/Microphys/microphys_driver.F90compile.py8e88e823c01ff67c119c389266848c925611c3ca1783713054000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoved option to disable silhs (#1332) 2026-07-10 14:50:54 -05008e88e823c01ff67c119c389266848c925611c3caRemoved option to disable silhs (#1332)editdash_app/compile_tab/runtime.pyeditsrc/Microphys/microphys_driver.F90editsrc/SILHS/silhs_api_module.F90editsrc/Microphys/Morrison_microphys/microphysics.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/clubb_driver.F90editCMakeLists.txteditsrc/Microphys/lh_microphys_driver_module.F90editcmake/utils/CPPDefinitions.cmakeeditdash_app/compile_tab/test_compile_tab_build_status.pyeditcompile.pyeditBUILD.mdeditsrc/SILHS/latin_hypercube_driver_module.F90editsrc/generalized_grid_test.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse552http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/552/550http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/550/Started by an SCM change550488f449568c63db426704905c4900f5fad8bc25e488f449568c63db426704905c4900f5fad8bc25erefs/remotes/origin/master488f449568c63db426704905c4900f5fad8bc25e488f449568c63db426704905c4900f5fad8bc25erefs/remotes/origin/master488f449568c63db426704905c4900f5fad8bc25e488f449568c63db426704905c4900f5fad8bc25erefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5503823399107644clubb_BFB_r8029_flags_gfortran_test #550550false5506067SUCCESS1783499228759http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/550/run_scripts/run_tuner.pytests/run_thread_test.pyb85bec98009c70ae215ecc3eeb67e1c30d77f6831783442757000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing little path bug in the old tuner script and the thread test script 2026-07-07 11:45:57 -0500b85bec98009c70ae215ecc3eeb67e1c30d77f683Fixing little path bug in the old tuner script and the thread test scriptedittests/run_thread_test.pyeditrun_scripts/run_tuner.pydash_app/README.md085d80ee0d2911eaf1df8845d1ab9f54a1e1bf6a1783452800000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate dash app README with alternative run command 2026-07-07 14:33:20 -0500085d80ee0d2911eaf1df8845d1ab9f54a1e1bf6aUpdate dash app README with alternative run commandeditdash_app/README.mddash_app/plot_tab/state.pydash_app/plot_tab/callbacks_controls.pydash_app/plot_tab/plot_types/shared.py.gitignoredash_app/compile_tab/discovery.pydash_app/app.pydash_app/compile_tab/runtime.pydash_app/assets/35_plot_slider_tooltips.jsdash_app/compile_tab/test_compile_tab_build_status.pydash_app/plot_tab/plot_types/profile_plot.pydash_app/README.mddash_app/assets/14_tab_compile_theme.cssdash_app/plot_tab/plot_types/subcolumn_plot.pydash_app/compile_tab/callbacks.pydash_app/compile_tab/layout.pydash_app/plot_tab/plot_types/budget_plot.pyREADMEdash_app/assets/12_tab_plots_theme.csslaunch_dashboard.shdash_app/requirements.txtdash_app/plot_tab/layout.pydash_app/plot_tab/callbacks_case.pydash_app/plot_tab/plot_types/timeheight_plot.pycompile.py488f449568c63db426704905c4900f5fad8bc25e1783483991000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comLocal python venv for dash app (#1329) * Little UI improvements to compile tab, and adding a dashboard launch script that installs the python dependencies for you in a local python venv * Little dash fixes to compile tab * Fixing little path bug in the old tuner script and the thread test script * Update dash app README with alternative run command * Little UI improvements to compile tab, and adding a dashboard launch script that installs the python dependencies for you in a local python venv * Little compile tab stlying and adding UI element to warn user of violated coding standards. Also improving README * Making the standards check error log viewable from the dash app * Little fix for mac * Plot updates, mainly default settings but a little slider UI * One more little default setting update --------- Co-authored-by: Vincent Larson <vlarson@users.noreply.github.com> 2026-07-07 23:13:11 -0500488f449568c63db426704905c4900f5fad8bc25eLocal python venv for dash app (#1329)editdash_app/assets/14_tab_compile_theme.csseditdash_app/plot_tab/plot_types/budget_plot.pyeditdash_app/plot_tab/plot_types/subcolumn_plot.pyeditdash_app/plot_tab/plot_types/timeheight_plot.pyeditdash_app/app.pyadddash_app/assets/35_plot_slider_tooltips.jseditdash_app/compile_tab/test_compile_tab_build_status.pyeditdash_app/compile_tab/runtime.pyeditREADMEeditdash_app/plot_tab/layout.pyeditdash_app/compile_tab/layout.pyeditdash_app/plot_tab/state.pyedit.gitignoreeditdash_app/assets/12_tab_plots_theme.csseditdash_app/plot_tab/plot_types/profile_plot.pyeditdash_app/plot_tab/callbacks_controls.pyeditdash_app/README.mdeditdash_app/compile_tab/callbacks.pyeditdash_app/compile_tab/discovery.pyeditdash_app/plot_tab/callbacks_case.pyeditdash_app/requirements.txteditcompile.pyeditdash_app/plot_tab/plot_types/shared.pyaddlaunch_dashboard.shgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse551http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/551/549http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/549/Started by an SCM change549d2415bd01044655b03328e22070af55f99511a59d2415bd01044655b03328e22070af55f99511a59refs/remotes/origin/masterd2415bd01044655b03328e22070af55f99511a59d2415bd01044655b03328e22070af55f99511a59refs/remotes/origin/masterd2415bd01044655b03328e22070af55f99511a59d2415bd01044655b03328e22070af55f99511a59refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5491537179107644clubb_BFB_r8029_flags_gfortran_test #549549false5495964SUCCESS1783412830742http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/549/input/parameter_and_flag_configs/default/tunable_parameters.in0b2206b6fec8e02c7539b444e1ac3b9aabb04ac51783362268000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove old SVN version control identifier ($Id$) from tunable_parameters.in 2026-07-06 13:24:28 -05000b2206b6fec8e02c7539b444e1ac3b9aabb04ac5Remove old SVN version control identifier ($Id$) from tunable_parameters.ineditinput/parameter_and_flag_configs/default/tunable_parameters.ininput/parameter_and_flag_configs/compatible_r8029/tunable_parameters.in1ebd57b3c3499139dc2d3424417ecd9edbf31e111783362399000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove old SVN version control identifier from compatible_r8029/tunable_parameters.in Removed the version control identifier from the file. 2026-07-06 13:26:39 -05001ebd57b3c3499139dc2d3424417ecd9edbf31e11Remove old SVN version control identifier from compatible_r8029/tunable_parameters.ineditinput/parameter_and_flag_configs/compatible_r8029/tunable_parameters.insrc/CLUBB_core/CMakeLists.txt15e88d15a1d7fa8d7ab5761e084ebc1874e0bf291783372173000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove blank line to test git update scripts 2026-07-06 16:09:33 -050015e88d15a1d7fa8d7ab5761e084ebc1874e0bf29Remove blank line to test git update scriptseditsrc/CLUBB_core/CMakeLists.txtsrc/generalized_grid_test.F90dash_app/compile_tab/runtime.pycmake/deps/GPTLDependency.cmakesrc/CLUBB_core/stats_netcdf.F90src/Microphys/pdf_hydromet_microphys_wrapper.F90run_scripts/run_scm.pysrc/CLUBB_core/code_timer_module.F90src/clubb_driver.F90src/CLUBB_core/CMakeLists.txtclubb_python_api/run_pytests.shREADMEdash_app/DEVELOPMENT.mdsrc/CMakeLists.txtdash_app/run_tab/callbacks_runs.pycmake/toolchains/linux_x86_64_nvhpc.cmakeclubb_python_api/CMakeLists.txtcompile.pyd2415bd01044655b03328e22070af55f99511a591783400577000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb timer upgrade (#1328) * Upgrading CLUBBs timer system. Now we either can use gptl just by compiling with it, or we use a cpu_time based fallback that was designed to be a crude copy * Giving up on using the build system to detect stale build, switching to a method that just compares timestamps on directories * Fixing small UI bug and removing a bit of dead code in the dash app, also fixing a gptl compiling issue on mac * Little fix for python * Adding a bit about the new timing output in the output section of the README * Improving print statements and disabling timing and iteration prints when debug=-1 --------- Co-authored-by: Gunther Huebler <guntherhuebler@frankie.uits.uwm.edu> 2026-07-07 00:02:57 -0500d2415bd01044655b03328e22070af55f99511a59Clubb timer upgrade (#1328)editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editrun_scripts/run_scm.pyeditcmake/deps/GPTLDependency.cmakeeditsrc/CMakeLists.txteditcompile.pyeditsrc/CLUBB_core/CMakeLists.txteditclubb_python_api/run_pytests.sheditREADMEeditdash_app/compile_tab/runtime.pyeditsrc/CLUBB_core/stats_netcdf.F90editsrc/generalized_grid_test.F90editdash_app/run_tab/callbacks_runs.pyeditsrc/clubb_driver.F90editsrc/CLUBB_core/code_timer_module.F90adddash_app/DEVELOPMENT.mdeditclubb_python_api/CMakeLists.txteditcmake/toolchains/linux_x86_64_nvhpc.cmakegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse550http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/550/548http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/548/Started by an SCM change548be5e217cd91196f514fb60f9668106e072c14c1bbe5e217cd91196f514fb60f9668106e072c14c1brefs/remotes/origin/masterbe5e217cd91196f514fb60f9668106e072c14c1bbe5e217cd91196f514fb60f9668106e072c14c1brefs/remotes/origin/masterbe5e217cd91196f514fb60f9668106e072c14c1bbe5e217cd91196f514fb60f9668106e072c14c1brefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#548299385107644clubb_BFB_r8029_flags_gfortran_test #548548false5485855SUCCESS1783240030465http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/548/input_misc/tuner/error_rico.ininput_misc/tuner/error_gabls3_night.indash_app/plot_tab/case_definitions.pyclubb_python_api/clubb_python/CLUBB_core/lapack_interfaces.pyutilities/read_sam_moments/netcdf_var_collector.pyinput_misc/tuner/error_nov11_altocu.indash_app/assets/14_tab_compile_theme.cssinput_misc/tuner/error_dycoms2_rf02_ds.ininput_misc/tuner/error_dycoms2_rf01.inclubb_python_api/clubb_python/CLUBB_core/grid_class.pydash_app/compile_tab/callbacks.pyinput_misc/tuner/error_wangara.intuner/case_defaults.jsoninput_misc/tuner/error_dycoms2_rf02_do.inutilities/create_case_namelist.pyinput_misc/tuner/error_dycoms2_rf02_nd.inclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyinput_misc/tuner/error_arm.indash_app/compile_tab/runtime.pycmake/deps/GPTLDependency.cmakeclubb_python_api/tests/test_udt_return_contract.pydash_app/run_tab/layout.pyclubb_python_driver/io/sounding.pyclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyinput_misc/tuner/error_arm_97.inclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pydash_app/tune_tab/layout.pyinput_misc/tuner/error_fire.ininput_misc/tuner/error_gabls2.intuner/case_defaults.pyinput_misc/tuner/error_atex.intuner/job_runtime.pydash_app/compile_tab/discovery.pyclubb_python_api/clubb_python/prescribe_forcings.pydash_app/README.mdinput_misc/tuner/error_four_cases.inclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pypostprocessing/pyplotgen/config/Case_definitions.pydash_app/assets/11_tab_run_theme.cssclubb_python_api/CMakeLists.txtinput_misc/tuner/error_bomex.ininput_misc/tuner/error_bomex_fire.indash_app/compile_tab/test_compile_tab_build_status.pyinput/les_and_clubb_benchmark_runsrun_scripts/run_scm.pyinput_misc/tuner/error_all.insrc/clubb_driver.F90input_misc/tuner/error_lba.inREADMEinput_misc/tuner/error_ticket_756.inbe5e217cd91196f514fb60f9668106e072c14c1b1783222022000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comTiny dash updates (#1327) * Cross-platform updates to help with running on Macs mainly. The biggest difference is that now our code expects the les data in input/, and I've added a symlink that points to the normal pub directory for it. This makes everything work the same, but also makes it so someone can download the les data and store it anywhere, then just change the symlink. * Little UI improvements * Small UI fix * Small fix needed for a different python version and a little UI update * Another tiny cross platform fix * Updating build removal method and adding a mac specific bit for GPTL compiling that fixes environment issues * Removing accidentally added file 2026-07-04 22:27:02 -0500be5e217cd91196f514fb60f9668106e072c14c1bTiny dash updates 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by user Gunther HueblerhueblerGunther Huebler54795d5d12aef49035170773f0714a97f4109bcccdd95d5d12aef49035170773f0714a97f4109bcccddrefs/remotes/origin/master95d5d12aef49035170773f0714a97f4109bcccdd95d5d12aef49035170773f0714a97f4109bcccddrefs/remotes/origin/master95d5d12aef49035170773f0714a97f4109bcccdd95d5d12aef49035170773f0714a97f4109bcccddrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#54721459107644clubb_BFB_r8029_flags_gfortran_test #547547false5475793SUCCESS1783184026114http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/547/http://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse548http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/548/546http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/546/Started by an SCM 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s/12_tab_plots_theme.cssinput/parameter_and_flag_configs/Lscale/tunable_parameters.insrc/clubb_loss_driver.F90input/parameter_and_flag_configs/compatible_r8029/tunable_parameters.in95d5d12aef49035170773f0714a97f4109bcccdd1783051574000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comTuner additions (#1324) * Starting new additions for tuner - specifically an overall history of all samples and loss metrics with the eventual goal of having fancy SVD and spline things we can do with that * Adding plots to tune tab to visualize data in the overall sample outputs * Adding the enhanced simulated annealed to the tuner. Only real tweak it that it runs workers x batch_size chains independently so that we can utilize the CPU fully * Filtering big values in parameter plot view and making default window length 3600s (1 hour) * Bug fix to metric report - a 0 correlation was able to throw things off, which could occur when a field from either result (clubb or LES) is all 0 without the other one being all zero. Also some small display improvements * Adding sensitivity plots * Updating flag/param selecting method by created a general input/tunable_parameters directory that contains subdirectories for different flag set combos. These can be used by passing in their name to run_scm.py with -config. Also updating references to these files since they moved and also making tests and scripts default to using -override instead of editting files with sed. * Adding buttons to select param/flag config in the tuner * Quality of life improvements for plot tab - now view settings and UI settings are retained when reloading the same case * Fixing missed comment change * Various small UI improvements * Improving tuner history check and little UI fix in run_tab * Fixing tuner environment setup * Fixing little netcdf version issue and adding new test for loss metrics consistency check * Renaming tunable_parameters to parameter_and_flag_configs, also adding -config example to run_scripts README 2026-07-02 23:06:14 -050095d5d12aef49035170773f0714a97f4109bcccddTuner additions (#1324)editdash_app/plot_tab/state.pyeditdash_app/plot_tab/plot_types/subcolumn_plot.pyeditinput/case_setups/coriolis_test_model.ineditdash_app/tune_tab/discovery.pyaddinput/parameter_and_flag_configs/compatible_r8029/configurable_model_flags.inaddinput/parameter_and_flag_configs/coriolis_cases/atex_long_parameters.inedittests/run_benchmark_converter_test.pyaddtests/analyze_tuner_sample_history.pyaddtests/run_loss_metrics_test.pyeditutilities/create_case_namelist.pydeleteinput/tunable_parameters/tunable_parameters.ineditdash_app/assets/14_tab_compile_theme.cssadddash_app/tunable_configs.pyeditdash_app/run_tab/runtime.pyeditdash_app/tune_tab/callbacks_display.pyeditdash_app/run_tab/namelist.pyaddinput/parameter_and_flag_configs/Lscale/configurable_model_flags.indeleteinput/tunable_parameters_Lscale/tunable_parameters.ineditdash_app/run_tab/callbacks_runs.pyeditrun_scripts/run_tuner_job.pyaddtuner/enhanced_simann_strategy.pyeditdash_app/assets/10_theme.cssaddinput/parameter_and_flag_configs/coriolis_cases/ekman_parameters.inaddinput/parameter_and_flag_configs/e3sm/configurable_model_flags.inaddinput/parameter_and_flag_configs/e3sm_maint32/silhs_parameters.ineditrun_scripts/run_scm.pyeditdash_app/plot_tab/layout.pyeditjenkins_tests/clubb_rev_grid_matrix_solve_test/Jenkinsfileeditdash_app/assets/12_tab_plots_theme.csseditrun_scripts/convergence_run/convergence_config.pyaddinput/parameter_and_flag_configs/default/configurable_model_flags.ineditdash_app/tune_tab/callbacks_runs.pyeditCMakeLists.txtdeleteinput/tunable_parameters_coriolis_cases/ekman_parameters.indeleterun_scripts/READMEaddinput/parameter_and_flag_configs/e3sm/tunable_parameters.ineditdash_app/plot_tab/plot_types/timeseries_plot.pyedittuner/status.pyedittuner/tuning_strategy.pyeditjenkins_tests/clubb_backwards_compatibility_gfortran_test/Jenkinsfiledeleteinput/tunable_parameters_compatible_r8029/silhs_parameters.ineditdash_app/tune_tab/tab.pydeleteinput/tunable_parameters_Lscale/configurable_model_flags.ineditsrc/clubb_loss_driver.F90edittests/test_monoflux_limiter_GPU.pyeditREADMEeditjenkins_tests/clubb_plot_solver_compare/Jenkinsfileedittuner/tuning_scheduler.pyaddinput/parameter_and_flag_configs/e3sm_maint32/configurable_model_flags.inaddinput/parameter_and_flag_configs/e3sm_maint32/maint32_defaults_report.mdedittuner/case_defaults.jsondeleteinput/tunable_parameters_tauMatchLscale/tunable_parameters.ineditdash_app/plot_tab/callbacks_case.pyeditutilities/loss_metrics.pyedittuner/test_tuning_strategy.pyedittuner/request.pyedittests/run_stats_output_consistency.pydeleteinput/tunable_parameters/silhs_parameters.ineditjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileeditsrc/generalized_grid_test.F90addinput/parameter_and_flag_configs/tauMatchLscale/tunable_parameters.indeleteinput/tunable_parameters_tauMatchLscale/configurable_model_flags.ineditutilities/create_multi_col_params.pyedittests/run_loss_output_consistency.pyeditdash_app/assets/13_tab_tune_theme.csseditsrc/clubb_tuner.F90editdash_app/plot_tab/plot_types/shared.pyeditrun_scripts/run_tuner.pyeditdash_app/plot_tab/callbacks_params.pyeditdash_app/plot_tab/plot_types/timeheight_plot.pyeditinput/case_setups/READMEeditjenkins_tests/clubb_driver_test/Jenkinsfileeditinput/case_setups/ekman_model.ineditdash_app/tune_tab/runtime.pyaddinput/parameter_and_flag_configs/compatible_r8029/silhs_parameters.ineditpostprocessing/output_scripts/cloud_feedback/READMEeditcmake/deps/GPTLDependency.cmakeadddash_app/run_tab/config_state.pyeditjenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfileaddinput/stats/all_tuning_stats.ineditrun_scripts/run_scm_loss.pyeditjenkins_tests/clubb_new_tuner_test/Jenkinsfileeditdash_app/tune_tab/layout.pydeleteinput/tunable_parameters_compatible_r8029/tunable_parameters.ineditdash_app/assets/11_tab_run_theme.csseditdash_app/compile_tab/callbacks.pyaddinput/parameter_and_flag_configs/default/tunable_parameters.indeleteinput/tunable_parameters/configurable_model_flags.indeleteinput/tunable_parameters_e3sm/tunable_parameters.inedittests/READMEeditdash_app/plot_tab/plot_types/budget_plot.pyeditdash_app/tune_tab/state.pyedittuner/paths.pyaddinput/parameter_and_flag_configs/default/silhs_parameters.inaddrun_scripts/README.mdeditcompile.pyedittuner/job_runtime.pydeleteinput/tunable_parameters_coriolis_cases/atex_long_parameters.ineditutilities/benchmark_converter.pydeleteinput/tunable_parameters_coriolis_cases/coriolis_test_parameters.ineditdash_app/run_tab/layout.pyeditens_tune/mytuner_sequential.basheditdash_app/run_tab/state.pyedit.gitignoreeditdash_app/plot_tab/callbacks_controls.pyaddinput/parameter_and_flag_configs/coriolis_cases/coriolis_test_parameters.inedittests/run_thread_test.pyaddinput/parameter_and_flag_configs/tauMatchLscale/configurable_model_flags.inaddtuner/sample_history.pyeditdash_app/compile_tab/layout.pyaddinput/parameter_and_flag_configs/compatible_r8029/tunable_parameters.ineditdash_app/run_tab/callbacks_settings.pyeditdash_app/run_tab/tab.pyaddtuner/syst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by an SCM change54531446891daef22d1f1ac63262df21583933565b931446891daef22d1f1ac63262df21583933565b9refs/remotes/origin/master31446891daef22d1f1ac63262df21583933565b931446891daef22d1f1ac63262df21583933565b9refs/remotes/origin/master31446891daef22d1f1ac63262df21583933565b931446891daef22d1f1ac63262df21583933565b9refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#545266490107644clubb_BFB_r8029_flags_gfortran_test #545545false5455542SUCCESS1782980826227http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/545/dash_app/run_tab/tab.pydash_app/compile_tab/discovery.pydash_app/app.pydash_app/compile_tab/runtime.pydash_app/assets/10_theme.cssclubb_python_api/README.mddash_app/run_tab/layout.pydash_app/assets/30_run_ui_resize.jsdash_app/compile_tab/tab.pydash_app/assets/14_tab_compile_theme.cssrun_scripts/run_scm.pydash_app/assets/20_autoscroll.jsdash_app/compile_tab/callbacks.pyrun_scripts/run_scm_loss.pydash_app/compile_tab/layout.pyclubb_python_api/run_pytests.shdash_app/plot_tab/plot_types/base_plot.pydash_app/tune_tab/layout.pydash_app/assets/11_tab_run_theme.cssdash_app/compile_tab/state.pyclubb_python_api/CMakeLists.txtdash_app/compile_tab/__init__.py31446891daef22d1f1ac63262df21583933565b91782963365000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comDash compile tab (#1323) * Fixing small UI issues and adding tab that currently only can compile, but the plan is to have to be compile + run tests * Improving compile tab - mainly implementing the ability to select existing builds to use as the version to run with. * Tiny fixes to run tab UI * Improvements to rebuilding - there were tiny bugs. * Updating method of installing python compiles - now we package the python .so libraries with the install build. This makes things simple to import and fixes compilation issues when switching between compilers * Cleanup - reverting various unneccesary things --------- Co-authored-by: Gunther Huebler <guntherhuebler@Gunthers-MacBook-Pro-2.local> 2026-07-01 22:36:05 -050031446891daef22d1f1ac63262df21583933565b9Dash compile tab (#1323)editdash_app/assets/20_autoscroll.jseditrun_scripts/run_scm_loss.pyadddash_app/compile_tab/tab.pyeditclubb_python_api/run_pytests.shadddash_app/compile_tab/state.pyeditdash_app/tune_tab/layout.pyeditdash_app/run_tab/tab.pyeditclubb_python_api/CMakeLists.txtadddash_app/compile_tab/layout.pyeditclubb_python_api/README.mdadddash_app/compile_tab/__init__.pyadddash_app/compile_tab/discovery.pyeditdash_app/plot_tab/plot_types/base_plot.pyadddash_app/assets/14_tab_compile_theme.csseditdash_app/assets/30_run_ui_resize.jsadddash_app/compile_tab/callbacks.pyeditrun_scripts/run_scm.pyeditdash_app/run_tab/layout.pyeditdash_app/assets/11_tab_run_theme.csseditdash_app/app.pyadddash_app/compile_tab/runtime.pyeditdash_app/assets/10_theme.cssgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse546http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/546/544http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/544/Started by an SCM change5447c083496c42caa1b7d18c781134f0cc18ae947487c083496c42caa1b7d18c781134f0cc18ae94748refs/remotes/origin/master7c083496c42caa1b7d18c781134f0cc18ae947487c083496c42caa1b7d18c781134f0cc18ae94748refs/remotes/origin/master7c083496c42caa1b7d18c781134f0cc18ae947487c083496c42caa1b7d18c781134f0cc18ae94748refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#54491538107644clubb_BFB_r8029_flags_gfortran_test #544544false5445432SUCCESS1782548826103http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/544/clubb_jax/advance_clubb_core.pyclubb_jax/advance_clubb_to_end.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyclubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90clubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90clubb_python_driver/advance_clubb_core.pyLLM_prompts/python_api_audit_handoff.mdclubb_python_api/tests/test_argument_contract_audit.pyclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyclubb_jax/clubb_case_initalization.pyclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90LLM_prompts/update_python_api_and_drivers.mdclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90clubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyclubb_python_driver/advance_clubb_to_end.pyclubb_python_driver/clubb_case_initalization.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/tests/test_call_tree_advance_core.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py1ba1f81f6b41e649dfe497947dc4c22c69f38f6c1782446549000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUpdating python contract audit to better detect API arg list discrepancies from the underlying fortran arg lists. Also adding a temporary handoff file and improving the python api fix shortcut (cherry picked from commit 47106db56945d6d0c1f962cc77d205db99d60f4f) 2026-06-25 23:02:29 -05001ba1f81f6b41e649dfe497947dc4c22c69f38f6cUpdating python contract audit to better detect API arg list discrepancies from the underlying fortran arg lists. Also adding a temporary handoff file and improving the python api fix shortcuteditLLM_prompts/update_python_api_and_drivers.mdeditclubb_python_driver/advance_clubb_to_end.pyaddLLM_prompts/python_api_audit_handoff.mdeditclubb_python_api/tests/test_call_tree_advance_xp3.pyeditclubb_jax/clubb_case_initalization.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/tests/test_argument_contract_audit.pyeditclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyeditclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90editclubb_jax/advance_clubb_to_end.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_driver/clubb_case_initalization.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_core.pyeditclubb_jax/advance_clubb_core.pyclubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pyclubb_python_api/tests/test_call_tree_corr_varnce_module.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyclubb_python_api/tests/test_call_tree_mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyclubb_python_api/f2py_fortran_wrappers/ly93_pdf_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyclubb_python_api/clubb_python/CLUBB_core/penta_bicgstab_solver.pyclubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.pyclubb_python_api/clubb_python/CLUBB_core/grid_class.pyclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyclubb_python_driver/radiation.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/saturation.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/radiation_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyclubb_python_api/f2py_fortran_wrappers/adg1_adg2_3d_luhar_pdf_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/remapping_module.pyclubb_python_api/clubb_python/CLUBB_core/diffusion.pyclubb_python_api/tests/test_advance_core_subs.pyclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pyclubb_python_api/tests/test_call_tree_numerical_check.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/pos_definite_module.pyclubb_python_api/clubb_python/CLUBB_core/turbulent_adv_pdf.pyclubb_python_api/clubb_python/CLUBB_core/calc_pressure.pyclubb_python_api/f2py_fortran_wrappers/new_tsdadg_pdf_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.pyclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyclubb_python_api/tests/test_call_tree_splat.pyclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyclubb_python_api/clubb_python/prescribe_forcings.pyclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyclubb_python_api/clubb_python/CLUBB_core/sfc_varnce_module.pyclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyclubb_python_api/tests/test_argument_contract_audit.pyLLM_prompts/python_api_audit_handoff.mdclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyclubb_python_api/clubb_python/CLUBB_core/corr_varnce_module.pyclubb_python_api/clubb_python/CLUBB_core/new_pdf.pyclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyclubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_wrapper.F90clubb_python_api/f2py_fortran_wrappers/new_pdf_wrapper.F90clubb_python_api/tests/test_call_tree_turbulent_adv_pdf.pyclubb_python_api/clubb_python/radiation.pyclubb_python_api/clubb_python/CLUBB_core/ly93_pdf.pyclubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/f2py_fortran_wrappers/sponge_layer_damping_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/new_pdf_main.pyclubb_python_api/clubb_python/CLUBB_core/skx_module.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py0da14a07a2ef02d9517c80c18d0a3a285dc08d041782446642000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduOur argument_contract_audit.py script checks if the python_api matches the underlying fortran - this makes it more strict, and fixes many of the inconsistencies it found. (cherry picked from commit f5c3b99d56499acc2a706cf024dd802f73030dd2) 2026-06-25 23:04:02 -05000da14a07a2ef02d9517c80c18d0a3a285dc08d04Our argument_contract_audit.py script checks if the python_api matches the underlying fortran - this makes it more strict, and fixes many of the inconsistencies it found.editclubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pyeditclubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.pyeditclubb_python_api/clubb_python/CLUBB_core/sfc_varnce_module.pyeditclubb_python_api/tests/test_call_tree_mixing_length.pyeditclubb_python_driver/radiation.pyeditclubb_python_api/f2py_fortran_wrappers/radiation_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyeditclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyeditclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.pyeditclubb_python_api/f2py_fortran_wrappers/new_pdf_wrapper.F90editclubb_python_api/tests/test_argument_contract_audit.pyeditclubb_python_api/clubb_python/CLUBB_core/corr_varnce_module.pyeditclubb_python_api/clubb_python/CLUBB_core/grid_class.pyeditclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pyeditclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyeditclubb_python_api/tests/test_call_tree_splat.pyeditclubb_python_api/f2py_fortran_wrappers/new_tsdadg_pdf_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/calc_pressure.pyeditclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditclubb_python_api/tests/test_call_tree_corr_varnce_module.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyeditclubb_python_api/clubb_python/CLUBB_core/skx_module.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyeditclubb_python_api/tests/test_call_tree_turbulent_adv_pdf.pyeditclubb_python_api/clubb_python/radiation.pyeditclubb_python_api/tests/test_call_tree_numerical_check.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/penta_bicgstab_solver.pyeditclubb_python_api/f2py_fortran_wrappers/ly93_pdf_wrapper.F90editclubb_python_api/clubb_python/prescribe_forcings.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_python_api/clubb_python/CLUBB_core/new_pdf.pydeleteLLM_prompts/python_api_audit_handoff.mdeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/f2py_fortran_wrappers/sponge_layer_damping_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.pyeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditclubb_python_api/clubb_python/CLUBB_core/saturation.pyeditclubb_python_api/clubb_python/CLUBB_core/ly93_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyeditclubb_python_api/clubb_python/CLUBB_core/diffusion.pyeditclubb_python_api/clubb_python/CLUBB_core/pos_definite_module.pyeditclubb_python_api/f2py_fortran_wrappers/adg1_adg2_3d_luhar_pdf_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/new_pdf_main.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/clubb_python/CLUBB_core/turbulent_adv_pdf.pyclubb_python_api/clubb_python/clubb_api.pyclubb_python_api/tests/test_call_tree_mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyclubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.pyclubb_python_api/tests/test_call_tree_transport.pyclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyclubb_python_api/f2py_fortran_wrappers/mixing_length_wrapper.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90clubb_python_api/tests/test_udt_return_contract.pyclubb_python_api/tests/test_init_pressure.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyclubb_python_api/clubb_python/CLUBB_core/diffusion.pyclubb_python_driver/clubb_case_initalization.pyclubb_python_api/tests/test_advance_core_subs.pyclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_api/tests/test_stats.pyclubb_python_api/tests/test_call_tree_precipitation_fraction.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/calc_pressure.pyclubb_python_api/tests/test_call_tree_ly93.pyclubb_python_api/tests/test_call_tree_sponge.pyclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.pyclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyclubb_python_api/tests/test_call_tree_luhar.pyclubb_python_api/clubb_python/prescribe_forcings.pyclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/advance_helper.pyclubb_python_api/clubb_python/CLUBB_core/new_pdf.pyclubb_python_api/tests/test_call_tree_skx.pyclubb_python_api/tests/test_call_tree_new_pdf.pyclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyclubb_jax/clubb_case_initalization.pyclubb_python_api/tests/test_call_tree_new_hybrid_pdf.pyclubb_python_api/tests/test_call_tree_mono_flux.pyclubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_driver/advance_clubb_to_end.pyclubb_python_api/clubb_python/radiation.pyclubb_python_api/clubb_python/CLUBB_core/ly93_pdf.pyclubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_main_wrapper.F90clubb_python_api/tests/test_call_tree_new_tsdadg.pyclubb_python_api/tests/test_call_tree_advance_core.pyclubb_python_api/tests/test_call_tree_remap.pyclubb_python_api/clubb_python/CLUBB_core/skx_module.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pye73f5d17f344ccfbf4741d978a7e0dd60a06fb251782446735000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduadvance_clubb_core.py cleanup and removing strange compat_kwargs usages that seem like artifacts of laziness (cherry picked from commit 9056400901e270333b80ee8f66af055d395b8020) 2026-06-25 23:05:35 -0500e73f5d17f344ccfbf4741d978a7e0dd60a06fb25advance_clubb_core.py cleanup and removing strange compat_kwargs usages that seem like artifacts of lazinesseditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditclubb_python_api/tests/test_call_tree_skx.pyeditclubb_python_api/tests/test_udt_return_contract.pyeditclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pyeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.pyeditclubb_python_driver/advance_clubb_to_end.pyeditclubb_python_api/tests/test_stats.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/tests/test_call_tree_new_tsdadg.pyeditclubb_python_api/f2py_fortran_wrappers/mixing_length_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyeditclubb_python_api/tests/test_call_tree_new_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/diffusion.pyeditclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/skx_module.pyeditclubb_python_driver/clubb_case_initalization.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/tests/test_call_tree_new_hybrid_pdf.pyeditclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/clubb_python/prescribe_forcings.pyeditclubb_python_api/clubb_python/CLUBB_core/new_pdf.pyeditclubb_python_api/tests/test_call_tree_ly93.pyeditclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_api/clubb_python/radiation.pyeditclubb_jax/clubb_case_initalization.pyeditclubb_python_api/tests/test_call_tree_advance_core.pyeditclubb_python_api/tests/test_call_tree_precipitation_fraction.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyeditclubb_python_api/tests/test_call_tree_advance_xp3.pyeditclubb_python_api/tests/test_call_tree_luhar.pyeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyeditclubb_python_api/tests/test_call_tree_sponge.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/tests/test_init_pressure.pyeditclubb_python_api/tests/test_call_tree_mixing_length.pyeditclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90editclubb_python_api/tests/test_call_tree_transport.pyeditclubb_python_api/clubb_python/CLUBB_core/calc_pressure.pyeditclubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_main_wrapper.F90editclubb_python_api/tests/test_call_tree_mono_flux.pyeditclubb_python_api/tests/test_call_tree_remap.pyeditclubb_python_api/clubb_python/CLUBB_core/ly93_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyeditclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyclubb_jax/advance_clubb_core.pyclubb_python_api/clubb_python/CLUBB_core/error_code.pyclubb_python_api/clubb_python/clubb_api.pyclubb_jax/advance_clubb_to_end.pyclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyclubb_python_api/tests/test_call_tree_luhar.pyclubb_python_api/clubb_python/prescribe_forcings.pyclubb_python_api/tests/test_call_tree_mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyLLM_prompts/port_underlying_fortran_to_other_languages.mdclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyclubb_python_driver/advance_clubb_core.pyclubb_python_api/tests/test_argument_contract_audit.pyclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyclubb_python_api/tests/test_call_tree_new_pdf.pyclubb_jax/clubb_case_initalization.pyclubb_python_api/clubb_python/CLUBB_core/loss_driver.pyLLM_prompts/SHORTCUTS.mdclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/clubb_loss_driver_wrapper.F90clubb_python_api/tests/test_call_tree_pdf_closure_driver.pyclubb_python_api/tests/test_call_tree_mono_flux.pyclubb_python_api/t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Hueblerhuebler@uwm.eduImproving audit script even more, fixing issues it found. Also making advance_clubb_core.py nice and making an LLM shortcut for how to repeat the process (cherry picked from commit 25b41435d7bfbbe03f2736440bdcbf4330f863ab) 2026-06-25 23:49:56 -05001fa8fdebc019e2807e0031f7233ef85243f80ad6Improving audit script even more, fixing issues it found. Also making advance_clubb_core.py nice and making an LLM shortcut for how to repeat the processeditclubb_jax/clubb_case_initalization.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyeditclubb_python_api/tests/test_call_tree_mono_flux.pyeditclubb_python_driver/clubb_case_initalization.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/loss_driver.pyeditclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyeditclubb_python_api/tests/test_call_tree_precipitation_fraction.pyeditclubb_python_driver/advance_clubb_to_end.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/tests/test_call_tree_advance_xp3.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyeditclubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.pyeditclubb_python_api/tests/test_call_tree_matrix_solver_wrapper.pyeditclubb_python_api/clubb_python/prescribe_forcings.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/new_pdf_main.pyaddLLM_prompts/port_underlying_fortran_to_other_languages.mdeditclubb_python_api/tests/test_argument_contract_audit.pyeditclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyeditclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditLLM_prompts/SHORTCUTS.mdeditclubb_python_api/f2py_fortran_wrappers/clubb_loss_driver_wrapper.F90editclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/tests/test_call_tree_new_pdf.pyeditclubb_jax/advance_clubb_core.pyeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/tests/test_stats.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyeditclubb_python_api/clubb_python/CLUBB_core/diffusion.pyeditclubb_jax/advance_clubb_to_end.pyeditclubb_python_api/clubb_python/CLUBB_core/error_code.pyeditclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyeditclubb_python_api/tests/test_call_tree_pdf_closure_driver.pyeditclubb_python_api/tests/test_call_tree_luhar.pyeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditclubb_python_api/tests/test_call_tree_mixing_length.pyeditclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyrun_scripts/READMEtests/READMErun_scripts/run_bindiff_all.pytests/run_bindiff_w_flags.py7c083496c42caa1b7d18c781134f0cc18ae947481782494071000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBuilding varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB test 2026-06-26 12:14:31 -05007c083496c42caa1b7d18c781134f0cc18ae94748Building varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB testeditrun_scripts/READMEedittests/READMEeditrun_scripts/run_bindiff_all.pyedittests/run_bindiff_w_flags.pygithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse545http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/545/543http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/543/Started by user Gunther HueblerhueblerGunther Huebler543955aa780e3a47b6accf7af68d85f76ad53baff39955aa780e3a47b6accf7af68d85f76ad53baff39refs/remotes/origin/master955aa780e3a47b6accf7af68d85f76ad53baff39955aa780e3a47b6accf7af68d85f76ad53baff39refs/remotes/origin/master955aa780e3a47b6accf7af68d85f76ad53baff39955aa780e3a47b6accf7af68d85f76ad53baff39refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#54396905107644clubb_BFB_r8029_flags_gfortran_test #543543false5435287SUCCESS1782454188436http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/543/run_scripts/run_tuner.pyrun_scripts/run_clubb_w_varying_flags.pyjenkins_tests/clubb_restart_silhs_gfortran_test/Jenkinsfileclubb_python_driver/README.mdrun_scripts/time_scm_all.bashtests/test_monoflux_limiter_GPU.pyinput/flag_sets/run_bindiff_w_flags_config_core_flags.jsoninput/flag_sets/run_bindiff_w_flags_config_example.jsonrun_scripts/generate_seed.bashjenkins_tests/clubb_timestep_convergence_gfortran_test/Jenkinsfilerun_scripts/run_scm_loss.pyrun_scripts/run_G_unit_tests.bashclubb_jax/JAX_CONVERSION_PLAN.mdjenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfilesrc/generalized_grid_test.F90run_scripts/create_case_namelist.pyrun_scripts/ensemble_run/ensembles/.gitignoretuner/paths.pytests/run_thread_test.pyjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfilerun_scripts/run_scm.bashrun_scripts/check_budget_balance.pyjenkins_tests/clubb_restart_gfortran_test/Jenkinsfilerun_scripts/run_scm_collect_suite.bashclubb_jax/README.mdjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfilerun_scripts/run_scm_collect.bashtests/run_restart_test.pyrun_scripts/run_silhs_test.bashrun_scripts/ensemble_run/create_output.bashtests/run_loss_output_consistency.pyrun_scripts/run_bindiff_w_flags_config_core_flags.jsontuner/test_tuning_strategy.pyrun_scripts/run_scm_debug.bashrun_scripts/test_fatal_error_handling.bashrun_scripts/run_stats_output_consistency.pyrun_scripts/run_python_vs_fortran_cases.pytests/run_benchmark_converter_test.pyrun_scripts/run_bindiff_w_flags.pyrun_scripts/run_clubb_and_pyplotgen.pyrun_scripts/run_clubb_conv_test.bashtests/run_stats_output_consistency.pyjenkins_tests/clubb_silhs_convergence_gfortran/Jenkinsfilejenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfilerun_scripts/run_G_unit_tests.pyjenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfilejenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfilesrc/clubb_driver.F90run_scripts/test_fatal_error_handling.pyREADMEtuner/README.mdrun_scripts/run_silhs_test.pypostprocessing/timestep_convergence_test.bashtests/test_fatal_error_handling.pyjenkins_tests/clubb_G_unit_gfortran_tests/Jenkinsfilejenkins_tests/clubb_cmake_output_matching/Jenkinsfiletests/run_timestep_tests.pytests/run_clubb_conv_test.pyrun_scripts/run_bindiff_all.bashpostprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.shtests/check_budget_balance.pyrun_scripts/ensemble_run/READMErun_scripts/ensemble_run/ensemble_run.bashrun_scripts/ensemble_run/submission/.gitignorerun_scripts/READMEjenkins_tests/clubb_openmp_gfortran_test/Jenkinsfileutilities/create_case_namelist.pyrun_scripts/run_benchmark_converter_test.pytests/run_jax_vs_fortran_cases.pytests/READMEtests/test_fire_tuner.pytuner/tuning_worker.pyrun_scripts/run_scm_all.bashrun_scripts/run_bindiff_w_flags_config_host_flags.jsonjenkins_tests/clubb_python_test/Jenkinsfiletests/check_mirrored_multi_col_output.pyrun_scripts/run_bindiff_w_flags_requirements.txtrun_scripts/create_multi_col_params.pyrun_scripts/run_loss_output_consistency.pyjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfiletests/run_G_unit_tests.pyrun_scripts/fire_tuner.pysrc/int2txt.F90postprocessing/pyplotgen/pyplotgen.pyrun_scripts/run_bindiff_w_flags_config_example.jsontests/run_python_vs_fortran_cases.pyrun_scripts/run_clubb_conv_test.pyrun_scripts/run_thread_test.bashrun_scripts/fill_holes.pyrun_scripts/check_mirrored_multi_col_output.pyrun_scripts/ensemble_run/input/.gitignorerun_scripts/RUN_CASESjenkins_tests/clubb_fire_tuning_gfortran_test/Jenkinsfiletests/run_bindiff_w_flags.pyrun_scripts/run_clubb_and_pyplotgen.bashjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfilejenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfilerun_scripts/run_timestep_tests.bashinput/flag_sets/run_bindiff_w_flags_config_host_flags.jsonjenkins_tests/clubb_uninit_var_oracle_test/Jenkinsfilejenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfilerun_scripts/run_timestep_tests.pyjenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfilerun_scripts/ensemble_run/output/.gitignorerun_scripts/run_tuner.bashLLM_prompts/update_python_api_and_drivers.mdtests/run_silhs_test.pyrun_scripts/diff_netcdf_outputs.pydash_app/fill_holes.pyrun_scripts/run_jax_vs_fortran_cases.pyrun_scripts/run_restart_test.pyrun_scripts/ensemble_run/ensemble_setup.bashrun_scripts/run_bindiff_varying_flags_output.pyrun_scripts/run_scm.pyrun_scripts/run_bindiff_all.pyutilities/create_multi_col_params.pyrun_scripts/run_thread_test.pyrun_scripts/test_monoflux_limiter_GPU.pysrc/CMakeLists.txtsrc/error.F90run_scripts/check_multi_col_error.pye04956358685c2869358db8b6d46d16cf9744b031782439617000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comCleaning up run_scripts (#1320) * Cleaning up run_scripts by removing old bash files, also moving many scripts into a new tests/ directory, since those are tests. Fixing a small bug in clubb_driver as well, just needed to move a print statement, otherwise it tries writing to a closed file. * A little cleanup and better READMEs for run_scripts and tests 2026-06-25 21:06:57 -0500e04956358685c2869358db8b6d46d16cf9744b03Cleaning up run_scripts (#1320)deleterun_scripts/ensemble_run/ensembles/.gitignoredeleterun_scripts/run_G_unit_tests.pydeleterun_scripts/RUN_CASESdeleterun_scripts/diff_netcdf_outputs.pyeditrun_scripts/run_tuner.pyaddtests/run_silhs_test.pyeditrun_scripts/run_bindiff_all.pyaddtests/test_fatal_error_handling.pyeditLLM_prompts/update_python_api_and_drivers.mddeletejenkins_tests/clubb_uninit_var_oracle_test/Jenkinsfiledeleterun_scripts/check_mirrored_multi_col_output.pydeleterun_scripts/run_stats_output_consistency.pyaddtests/run_G_unit_tests.pydeleterun_scripts/run_scm_all.bashaddtests/run_bindiff_w_flags.pyeditclubb_jax/JAX_CONVERSION_PLAN.mdeditrun_scripts/run_scm.pyeditclubb_jax/README.mdaddtests/run_stats_output_consistency.pyeditjenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfileeditjenkins_tests/clubb_G_unit_gfortran_tests/Jenkinsfiledeleterun_scripts/run_timestep_tests.pyadddash_app/fill_holes.pydeleterun_scripts/fire_tuner.pyeditsrc/clubb_driver.F90deleterun_scripts/check_budget_balance.pydeleterun_scripts/run_bindiff_w_flags_config_core_flags.jsondeleterun_scripts/run_scm.bashdeleterun_scripts/ensemble_run/create_output.bashdeleterun_scripts/run_bindiff_w_flags_config_host_flags.jsoneditREADMEeditpostprocessing/timestep_convergence_test.bashdeletesrc/int2txt.F90addtests/run_timestep_tests.pyaddinput/flag_sets/run_bindiff_w_flags_config_core_flags.jsoneditsrc/CMakeLists.txtedittuner/test_tuning_strategy.pydeleterun_scripts/run_jax_vs_fortran_cases.pyaddutilities/create_multi_col_params.pydeleterun_scripts/run_bindiff_w_flags_config_example.jsoneditjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfiledeleterun_scripts/run_thread_test.pyaddtests/test_monoflux_limiter_GPU.pydeleterun_scripts/run_clubb_conv_test.pydeleterun_scripts/create_multi_col_params.pyaddtests/test_fire_tuner.pyaddtests/READMEaddtests/run_thread_test.pyeditjenkins_tests/clubb_timestep_convergence_gfortran_test/Jenkinsfileeditrun_scripts/READMEaddtests/run_jax_vs_fortran_cases.pyaddrun_scripts/run_clubb_and_pyplotgen.pyeditrun_scripts/run_clubb_w_varying_flags.pydeleterun_scripts/run_scm_collect_suite.bashdeleterun_scripts/run_benchmark_converter_test.pydeleterun_scripts/run_python_vs_fortran_cases.pyaddinput/flag_sets/run_bindiff_w_flags_config_host_flags.jsonaddtests/check_mirrored_multi_col_output.pyeditjenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfileaddtests/run_loss_output_consistency.pyeditpostprocessing/pyplotgen/pyplotgen.pyaddtests/run_restart_test.pyaddinput/flag_sets/run_bindiff_w_flags_config_example.jsonedittuner/tuning_worker.pyedittuner/paths.pydeleterun_scripts/run_thread_test.basheditjenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfiledeleterun_scripts/run_clubb_conv_test.basheditjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfiledeleterun_scripts/run_scm_debug.basheditjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfileeditjenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfiledeletejenkins_tests/clubb_cmake_output_matching/Jenkinsfiledeleterun_scripts/run_G_unit_tests.bashaddutilities/create_case_namelist.pydeleterun_scripts/time_scm_all.bashaddtests/run_benchmark_converter_test.pydeleterun_scripts/ensemble_run/input/.gitignoredeleterun_scripts/test_fatal_error_handling.pydeleterun_scripts/run_restart_test.pyeditjenkins_tests/clubb_fire_tuning_gfortran_test/Jenkinsfiledeleterun_scripts/test_fatal_error_handling.bashaddtests/run_clubb_conv_test.pydeleterun_scripts/ensemble_run/ensemble_setup.bashedittuner/README.mddeleterun_scripts/fill_holes.pydeleterun_scripts/create_case_namelist.pydeleterun_scripts/run_bindiff_all.bashdeleterun_scripts/run_tuner.basheditrun_scripts/run_scm_loss.pydeleterun_scripts/test_monoflux_limiter_GPU.pydeleterun_scripts/run_clubb_and_pyplotgen.bashdeleterun_scripts/check_multi_col_error.pyeditclubb_python_driver/README.mdeditjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfileaddtests/check_budget_balance.pydeleterun_scripts/run_silhs_test.pydeleterun_scripts/run_timestep_tests.basheditjenkins_tests/clubb_restart_silhs_gfortran_test/Jenkinsfiledeleterun_scripts/generate_seed.basheditsrc/error.F90editjenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfileeditpostprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.shdeleterun_scripts/ensemble_run/READMEdeleterun_scripts/run_bindiff_varying_flags_output.pydeleterun_scripts/run_bindiff_w_flags.pyeditjenkins_tests/clubb_restart_gfortran_test/Jenkinsfiledeleterun_scripts/run_loss_output_consistency.pydeleterun_scripts/run_silhs_test.bashaddtests/run_python_vs_fortran_cases.pyeditjenkins_tests/clubb_openmp_gfortran_test/Jenkinsfiledeleterun_scripts/run_bindiff_w_flags_requirements.txtdeleterun_scripts/run_scm_collect.bashdeleterun_scripts/ensemble_run/submission/.gitignoreeditjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfiledeleterun_scripts/ensemble_run/ensemble_run.basheditjenkins_tests/clubb_python_test/Jenkinsfileeditsrc/generalized_grid_test.F90editjenkins_tests/clubb_silhs_convergence_gfortran/Jenkinsfiledeleterun_scripts/ensemble_run/output/.gitignoreeditjenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfilerun_scripts/READMEsrc/CMakeLists.txtsrc/jacobian.F90input_misc/jacobian.inREADMErun_scripts/run_jacobian.bash5512bff0caa1b179b2a03a5512fc3de2c866b0cb1782441296000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving jacobian code - it has not worked in a long time 2026-06-25 21:34:56 -05005512bff0caa1b179b2a03a5512fc3de2c866b0cbRemoving jacobian code - it has not worked in a long timeeditrun_scripts/READMEdeleteinput_misc/jacobian.ineditREADMEdeleterun_scripts/run_jacobian.basheditsrc/CMakeLists.txtdeletesrc/jacobian.F90src/Input_fields/recl.ince1ca53920f7095d09c5dde5b9502f4056c481b481782441838000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving recl.inc, just dead code for an outdated issue 2026-06-25 21:43:58 -0500e1ca53920f7095d09c5dde5b9502f4056c481b48Removing recl.inc, just dead code for an outdated issuedeletesrc/Input_fields/recl.incsrc/CLUBB_core/lapack_wrap.F900ed15803474cd7d3d8228a642e9e2599a840707d1782442179000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving ifdefs that are only for E3SM and only on a specific machine 2026-06-25 21:49:39 -05000ed15803474cd7d3d8228a642e9e2599a840707dRemoving ifdefs that are only for E3SM and only on a specific machineeditsrc/CLUBB_core/lapack_wrap.F90src/CLUBB_core/advance_clubb_core_module.F90src/generalized_grid_test.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/mixing_length.F9086f7a6081cc525e6d953cebc42d4e5962d7e24f21782443428000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving the CLUBBND_CAM option, not sure what it was for, it's not defined in this repo or any of our host model repos 2026-06-25 22:10:28 -050086f7a6081cc525e6d953cebc42d4e5962d7e24f2Removing the CLUBBND_CAM option, not sure what it was for, it's not defined in this repo or any of our host model reposeditsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/generalized_grid_test.F90src/generalized_grid_test.F90src/CLUBB_core/pdf_closure_module.F90clubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90src/Input_fields/input_fields.F90clubb_python_api/tests/test_call_tree_pdf_closure_driver.pyclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pysrc/Microphys/pdf_hydromet_microphys_wrapper.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/clubb_driver.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90clubb_python_api/clubb_f2py.pyfclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.py955aa780e3a47b6accf7af68d85f76ad53baff391782445585000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving unused variables 2026-06-25 22:46:25 -0500955aa780e3a47b6accf7af68d85f76ad53baff39Removing unused variableseditclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditsrc/CLUBB_core/pdf_closure_module.F90editsrc/generalized_grid_test.F90editclubb_python_api/tests/test_call_tree_pdf_closure_driver.pyeditsrc/Input_fields/input_fields.F90editclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90editsrc/clubb_driver.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditsrc/CLUBB_core/advance_windm_edsclrm_module.F90editclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse544http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/544/542http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/542/Started by an SCM change5422ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/master2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/master2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#54288504107644clubb_BFB_r8029_flags_gfortran_test #542542false5425166SUCCESS1782289630480http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/542/README2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb1782247864000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRecently clubb_BFB_varying_flags_gfortran_test failed due to a script bug, dispite it being BFB. RESOLVED:2a334f87922dfaceb7d3a37b1924d374f1b986d5 2026-06-23 15:51:04 -05002ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbRecently clubb_BFB_varying_flags_gfortran_test failed due to a script bug, dispite it being BFB. RESOLVED:2a334f87922dfaceb7d3a37b1924d374f1b986d5editREADMEgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse543http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/543/541http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/541/Started by an SCM change5412a334f87922dfaceb7d3a37b1924d374f1b986d52a334f87922dfaceb7d3a37b1924d374f1b986d5refs/remotes/origin/master2a334f87922dfaceb7d3a37b1924d374f1b986d52a334f87922dfaceb7d3a37b1924d374f1b986d5refs/remotes/origin/master2a334f87922dfaceb7d3a37b1924d374f1b986d52a334f87922dfaceb7d3a37b1924d374f1b986d5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#541197591107644clubb_BFB_r8029_flags_gfortran_test #541541false5415048SUCCESS1781771230355http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/541/clubb_python_api/clubb_python/clubb_api.pysrc/CLUBB_core/pdf_closure_module.F90dash_app/assets/37_run_console_state.jsclubb_python_api/f2py_fortran_wrappers/stats_netcdf_wrapper.F90dash_app/tune_tab/__init__.pydash_app/assets/13_tab_tune_theme.csssrc/clubb_loss_driver_test.F90dash_app/tune_tab/callbacks_display.pydash_app/run_tab/callbacks_console.pysrc/CLUBB_core/error_code.F90tuner/clubb_loss_driver.pydash_app/plot_tab/profile_loss.pytuner/taylor_metrics.pyrun_scripts/run_scm_loss.pysrc/clubb_driver_test.F90tuner/case_defaults.jsonrun_scripts/run_benchmark_converter_test.pydash_app/tune_tab/tab.pyclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pydash_app/tune_tab/runtime.pydash_app/plot_tab/plot_types/shared.pytuner/clubb_loss_driver_test.pytuner/tune_clubb.pytuner/tuning_worker.pyutilities/loss_metrics.pyrun_scripts/create_case_namelist.pyjenkins_tests/LLM_FAILURE_AUTOMATION_DESIGN.mdtuner/paths.pysrc/SILHS/latin_hypercube_driver_module.F90tuner/status.pydash_app/run_tab/layout.pydash_app/plot_tab/benchmark_overlay.pyclubb_python_driver/clubb_case_initalization.pyrun_scripts/run_loss_output_consistency.pyrun_scripts/create_multi_col_params.pydash_app/plot_tab/callbacks_grid.pysrc/CLUBB_core/clubb_api_module.F90dash_app/tune_tab/callbacks_runs.pydash_app/tune_tab/layout.pyclubb_python_api/clubb_f2py.pyfdash_app/requirements.txtdash_app/tune_tab/discovery.pyjenkins_tests/clubb_new_tuner_test/Jenkinsfilerun_scripts/run_tuner_job.pytuner/case_defaults.pydash_app/plot_tab/plot_types/timeheight_plot.pydash_app/assets/36_tune_ui_resize.jsdash_app/plot_tab/state.pytuner/job_runtime.pyutilities/__init__.pytuner/test_tuning_strategy.pytuner/__init__.pysrc/CLUBB_core/stats_netcdf.F90dash_app/tune_tab/callbacks_settings.pydash_app/README.mdtuner/tuning_strategy.pyrun_scripts/run_stats_output_consistency.pytuner/request.pyutilities/benchmark_converter.pydash_app/plot_tab/plot_types/budget_plot.pyclubb_python_api/clubb_python/_runtime_loader.pyclubb_python_api/clubb_python/CLUBB_core/loss_driver.pydash_app/plot_tab/layout.pydash_app/plot_tab/callbacks_controls.pydash_app/plot_tab/callbacks_params.pyclubb_python_api/f2py_fortran_wrappers/clubb_loss_driver_wrapper.F90dash_app/app.pyjenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfileclubb_python_api/clubb_python/__init__.pydash_app/plot_tab/plot_types/profile_plot.pyclubb_python_driver/advance_clubb_to_end.pysrc/clubb_standalone_loss.F90run_scripts/run_scm.pyrun_scripts/run_bindiff_all.pydash_app/plot_tab/plot_types/subcolumn_plot.pysrc/clubb_driver.F90READMEtuner/tuning_scheduler.pysrc/CMakeLists.txtdash_app/assets/12_tab_plots_theme.csstuner/README.mddash_app/plot_tab/callbacks_case.pysrc/clubb_loss_driver.F90dash_app/tune_tab/state.py2a334f87922dfaceb7d3a37b1924d374f1b986d51781756186000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb loss driver (#1303) * First set of commits for the new loss driver. * Improvements * Batching capabilities * Lot's of cleanup, simplifications, and consolidation * More testing * Python interfaces for the loss driver * Interface for tuner and tuner with modes. * Nice updates * Missed file * Little updates to fix inconsistencies in the plots and averaging ranges * Adding a script that converts sam and coamps netcdf files to a clubb named version, including things that need to be calculated. This fixes a bug where fields were being averaged before being calculated, see https://github.com/larson-group/clubb/issues/1284, but is currently only wired up in the new tuner and the dash app plotter * Making some things public for nvhpc * Organization and consistency test fix * Adding taylor diagram to tune tab, this needs taylor metrics to be computed so the loss driver needed to output this info. * Adding more fancy loss functions based on Taylor metrics and a way to switch how the loss is computed in the dash tuner * Making NaN in code not an issue * Mostly dash app improvements to plotting, also made subwindows for tuning * Tuner tracking by case * Removing stats time-variance code * Simplifying loss driver output - now loss metrics are output explicitly rather than as packaged taylor_metrics and having different versions for subwindows and such * Mainly ui updates and small simplifications * Improving comments and cleaning things up a bit * Removing strictness on stats window vs output interval, and adding a stats consistency test to tests for issues with batch size and output frequency and the windowing mode * Fixing openmp bug and making incomplete stats intervals not output, as it was before * Making jenkins test use standard stats, and fixing tiny bug that caused error running with debug+no rcp2 stats * Adding gate around bindiff, there's an edge case where a cosmetic diff can trigger a full-diff even in a failed case, which should otherwise be considered BFB and skipped. * Adding some README entries for the dash app and a python requirements file * Adding comments and little bug fix to dash app * Update to loss consistency test, making it simpler since stats consistency test covers most things. Also adding it to the stats consistency jenkins test since it is still similar * Cleanup and code consolidation, new jenkins test for tuner * Adding comments * Fixing little bugs * Slight improvement to stats_api * Small bug fix * Consolidating stats time setting 2026-06-17 23:16:26 -05002a334f87922dfaceb7d3a37b1924d374f1b986d5Clubb loss driver (#1303)adddash_app/tune_tab/callbacks_settings.pyeditsrc/clubb_driver_test.F90addtuner/__init__.pyaddtuner/clubb_loss_driver.pyeditclubb_python_api/f2py_fortran_wrappers/stats_netcdf_wrapper.F90editclubb_python_api/clubb_python/clubb_api.pyadddash_app/README.mdaddtuner/job_runtime.pyeditdash_app/plot_tab/callbacks_params.pyeditsrc/CLUBB_core/clubb_api_module.F90editsrc/CMakeLists.txtaddrun_scripts/run_loss_output_consistency.pyadddash_app/tune_tab/tab.pyeditdash_app/plot_tab/callbacks_case.pyadddash_app/tune_tab/runtime.pyeditdash_app/plot_tab/state.pyaddrun_scripts/run_tuner_job.pyaddtuner/tuning_scheduler.pyeditdash_app/plot_tab/benchmark_overlay.pyeditsrc/CLUBB_core/pdf_closure_module.F90editrun_scripts/run_bindiff_all.pyeditclubb_python_driver/clubb_case_initalization.pyeditdash_app/app.pyaddtuner/test_tuning_strategy.pyeditdash_app/plot_tab/plot_types/profile_plot.pyadddash_app/plot_tab/profile_loss.pyeditdash_app/run_tab/callbacks_console.pyadddash_app/requirements.txtadddash_app/assets/13_tab_tune_theme.csseditdash_app/run_tab/layout.pyaddrun_scripts/run_scm_loss.pyaddsrc/clubb_loss_driver_test.F90addrun_scripts/create_case_namelist.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyeditclubb_python_driver/advance_clubb_to_end.pyadddash_app/tune_tab/discovery.pyaddclubb_python_api/clubb_python/_runtime_loader.pyaddtuner/tuning_worker.pyaddutilities/loss_metrics.pyeditdash_app/plot_tab/plot_types/budget_plot.pyaddrun_scripts/run_stats_output_consistency.pyeditREADMEadddash_app/tune_tab/state.pyaddsrc/clubb_standalone_loss.F90addutilities/benchmark_converter.pyeditdash_app/plot_tab/callbacks_grid.pyaddtuner/README.mdaddrun_scripts/run_benchmark_converter_test.pyeditclubb_python_api/clubb_python/__init__.pyaddclubb_python_api/clubb_python/CLUBB_core/loss_driver.pyeditdash_app/plot_tab/plot_types/subcolumn_plot.pyaddtuner/status.pyeditsrc/SILHS/latin_hypercube_driver_module.F90editdash_app/plot_tab/plot_types/timeheight_plot.pyeditdash_app/plot_tab/plot_types/shared.pyaddtuner/tuning_strategy.pyeditrun_scripts/run_scm.pyeditdash_app/assets/12_tab_plots_theme.csseditsrc/CLUBB_core/stats_netcdf.F90editdash_app/plot_tab/layout.pyaddjenkins_tests/clubb_new_tuner_test/Jenkinsfileaddclubb_python_api/f2py_fortran_wrappers/clubb_loss_driver_wrapper.F90addjenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfileaddtuner/tune_clubb.pyaddtuner/paths.pyaddtuner/case_defaults.jsonaddjenkins_tests/LLM_FAILURE_AUTOMATION_DESIGN.mdaddutilities/__init__.pyadddash_app/tune_tab/callbacks_runs.pyadddash_app/assets/36_tune_ui_resize.jsadddash_app/assets/37_run_console_state.jseditrun_scripts/create_multi_col_params.pyaddsrc/clubb_loss_driver.F90adddash_app/tune_tab/__init__.pyeditdash_app/plot_tab/callbacks_controls.pyaddtuner/taylor_metrics.pyeditsrc/clubb_driver.F90addtuner/request.pyadddash_app/tune_tab/callbacks_display.pyeditsrc/CLUBB_core/error_code.F90adddash_app/tune_tab/layout.pyaddtuner/clubb_loss_driver_test.pyeditclubb_python_api/clubb_f2py.pyfaddtuner/case_defaults.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse542http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/542/540http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/540/Started by an SCM change540d4fbf466f74b11ca7b5a81575427768beebc3f5bd4fbf466f74b11ca7b5a81575427768beebc3f5brefs/remotes/origin/masterd4fbf466f74b11ca7b5a81575427768beebc3f5bd4fbf466f74b11ca7b5a81575427768beebc3f5brefs/remotes/origin/masterd4fbf466f74b11ca7b5a81575427768beebc3f5bd4fbf466f74b11ca7b5a81575427768beebc3f5brefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#54089381107644clubb_BFB_r8029_flags_gfortran_test #540540false5404903SUCCESS1781684828805http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/540/src/clubb_driver.F90d4fbf466f74b11ca7b5a81575427768beebc3f5b1781661933000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing bug that caused incorrect times to be written to netcdf in cases where stats_tout (output interval) > dt_main (timestep). This is BIT_CHANGING because of that, but only for the time variable (no field differences), and only for cases where we don't output each timestep. 2026-06-16 21:05:33 -0500d4fbf466f74b11ca7b5a81575427768beebc3f5bFixing bug that caused incorrect times to be written to netcdf in cases where stats_tout (output interval) > dt_main (timestep). This is BIT_CHANGING because of that, but only for the time variable (no field differences), and only for cases where we don't output each timestep.editsrc/clubb_driver.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse541http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/541/539http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/539/Started by an SCM change539a38df744233769a1888462f2616bd9d8c007fcf5a38df744233769a1888462f2616bd9d8c007fcf5refs/remotes/origin/mastera38df744233769a1888462f2616bd9d8c007fcf5a38df744233769a1888462f2616bd9d8c007fcf5refs/remotes/origin/mastera38df744233769a1888462f2616bd9d8c007fcf5a38df744233769a1888462f2616bd9d8c007fcf5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#539109710107644clubb_BFB_r8029_flags_gfortran_test #539539false5394785SUCCESS1781252827556http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/539/jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfilea38df744233769a1888462f2616bd9d8c007fcf51781191186000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate Jenkinsfile to match moved file - utilities/convert_acc_to_omp.bash 2026-06-11 10:19:46 -0500a38df744233769a1888462f2616bd9d8c007fcf5Update Jenkinsfile to match moved fileeditjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse540http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/540/538http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/538/Started by an SCM 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#538538false5384705SUCCESS1781166427999http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/538/compile/config/linux_x86_64_ifort_compy.bashcompile/file_list/clubb_parabolic_filesutilities/convert_acc_to_omp.bashcompile/file_list/jacobian_filesdocs/license.htmlcompile/config/READMEcompile/config/linux_x86_64_ifort_optimizing.bashcompile/clean_all.bashcompile/config/linux_x86_64_ifort_r4.bashcompile/config/linux_x86_64_gfortran_ubuntu.bashcompile/config/linux_ia64_ifort.bashcompile/Makefilecompile/file_list/clubb_morrison_filescompile/file_list/clubb_KK_microphys_filescompile/compiler_tests.bashobj/.gitignorecompile/config/linux_x86_64_nvhpc.bashdocs/about.htmlcompile/mkmfcompile/config/linux_x86_64_oracle_debug.bashcompile/config/linux_x86_64_ifort_debug.bashdocs/images/static/pgbk.gifcompile/config/linux_x86_64_ifort_anvil.bashcompile/file_list/clubb_bugsrad_filesdocs/images/dynamic/buttonset1/subnav1hover.gifcompile/config/macosx_x86_64_gfortran.bashcompile/file_list/int2txt_filescompile/config/linux_x86_64_open64_debug.bashcompile/config/linux_x86_64_gfortran_NCAR.bashcompile/config/linux_x86_64_ifort_hd1.bashcompile/READMEcompile/config/linux_x86_64_gfortran.bashcompile/config/linux_x86_64_nvhpc_debug.bashdocs/index.htmlcompile/config/linux_x86_64_gfortran_debug.bashcompile/file_list/G_unit_tests_fileslib/.gitignoredocs/images/dynamic/key_visual1.jpgcompile/config/linux_x86_64_ifort_r4_debug.bashcompile/config/linux_x86_64_absoft.bashcompile/convert_acc_to_omp.bashcompile/config/linux_x86_64_nvhpc_gpu_openmp.bashcompile/config/linux_x86_64_ifort_hd1_debug.bashdocs/_config.ymlcompile/config/mswin_mingw_x86_gfortran.bashbin/.gitignoredocs/images/dynamic/buttonset1/subnav1.gifcompile/config/mswin_cygwin_i686_gfortran.bashcompile/config/linux_x86_64_cray_frontier.bashcompile/config/linux_x86_64_oracle_optimize.bashdocs/style/style.cssdocs/faq.htmlcompile/file_list/clubb_tuner_filescompile/config/linux_x86_64_ifort.bashcompile/config/linux_x86_64_open64.bashdocs/images/dynamic/buttonset1/n1activeitem.gifcompile/config/linux_x86_64_ifort_gpu_openmp.bashcompile/config/gfdl_wks.bashcompile/config/linux_x86_64_gfortran_compy.bashcompile/file_list/clubb_model_filesdocs/style/colorscheme.csscompile/config/linux_x86_64_gfortran_hd1.bashcompile/config/solaris_generic_oracle.bashcompile/config/linux_x86_64_nvhpc_gpu_openacc.bashdocs/style/main.csscompile/file_list/clubb_thread_test_filescompile/compile.bashcompile/config/linux_x86_64_gfortran_r4.bashcompile/file_list/clubb_standalone_filesbeffd89a659bcbddc72da2c23fa57ff0bd34a4241781117467000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comDeleted the old compile directory and docs directory (#1315) - The old mkmf/make compile directory, the bash based compile scripts are no longer needed now that we have CMake - Moved `convert_acc_to_omp.bash` to utilities/ directory - The docs directory had an old copy of the website, but the website is backed up to a local drive on Carson 2026-06-10 13:51:07 -0500beffd89a659bcbddc72da2c23fa57ff0bd34a424Deleted the old compile directory and docs directory 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README, BUILD.md, and pyplotgen README.md (#1309) 2026-06-10 14:42:04 -0500f6b2bf7d9b01b55a68c5101649d8a157ee17921fUpdate README, BUILD.md, and pyplotgen README.md (#1309)editBUILD.mdeditcompile.pyeditpostprocessing/pyplotgen/README.mdeditREADMEgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse539http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/539/537http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/537/Started by an SCM change5377945eaacac73eb9bbf7dc2b21dd6187c724a8fbf7945eaacac73eb9bbf7dc2b21dd6187c724a8fbfrefs/remotes/origin/master7945eaacac73eb9bbf7dc2b21dd6187c724a8fbf7945eaacac73eb9bbf7dc2b21dd6187c724a8fbfrefs/remotes/origin/master7945eaacac73eb9bbf7dc2b21dd6187c724a8fbf7945eaacac73eb9bbf7dc2b21dd6187c724a8fbfrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5371659008107644clubb_BFB_r8029_flags_gfortran_test 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outdated Matlab files (#1313) - Removed plotting, utility, and post-processing Matlab scripts 2026-06-09 14:30:35 -0500e969f3be4e23a0ed4932c6c7c34baa05cca9e136Removed/deleted outdated Matlab files 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GrADS (.ctl, .dat) file format and reference to it (#1310) - Made updates to Input Fields to remove GrADS. 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by user Trevor HancockhancockTrevor Hancock536039f9da10548eff43e3aa9c2d928cbed34689600039f9da10548eff43e3aa9c2d928cbed34689600refs/remotes/origin/master039f9da10548eff43e3aa9c2d928cbed34689600039f9da10548eff43e3aa9c2d928cbed34689600refs/remotes/origin/master039f9da10548eff43e3aa9c2d928cbed34689600039f9da10548eff43e3aa9c2d928cbed34689600refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#536487856107644clubb_BFB_r8029_flags_gfortran_test #536536false5364467SUCCESS1780693586941http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/536/utilities/READMEutilities/CLUBBStandardsCheck.pl039f9da10548eff43e3aa9c2d928cbed346896001780693246000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoved perl and references to it (#1311) * Removed perl and references to it * Reverting changes to files/directories as requested 2026-06-05 16:00:46 -0500039f9da10548eff43e3aa9c2d928cbed34689600Removed perl and references to it 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plotgen (#1312) * Removed entire plotgen directory 2026-06-04 13:47:50 -050053893cabfda88eccc92204a3471b3855a4716aa6Removed plotgen 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#534534false5344309SUCCESS1780561629267http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/534/src/CLUBB_core/new_hybrid_pdf_main.F90clubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pysrc/CLUBB_core/advance_xp3_module.F90clubb_jax/advance_clubb_core.pysrc/CLUBB_core/pdf_closure_module.F90clubb_jax/advance_clubb_to_end.pyclubb_python_api/clubb_python/clubb_api.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyclubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/skx_module_wrapper.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/Skx_module.F90clubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/f2py_fortran_wrappers/mixing_length_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/advance_helper.pysrc/CLUBB_core/stats_clubb_utilities.F90clubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/sigma_sqd_w_module_wrapper.F90src/G_unit_test_types/pdf_parameter_tests.F90clubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pysrc/CLUBB_core/advance_helper_module.F90src/CLUBB_core/sigma_sqd_w_module.F90clubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90clubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pysrc/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90clubb_python_api/tests/test_advance_core_subs.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/tests/test_call_tree_meta.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py0be32f96d2f5c4ce974c17fbc82912d516b68baf1780545147000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb organization part3 (#1306) * More BFB movements * Reworking where sigma_sqd_w and gamma_Skw_fnc are computed - this should all be BFB. Also fixing the G_unit test that was failing due to sigma_sqd_w issues * Correcting arg list * Fixes after rebase * Making sigma_sqd_w_zt BFB vs master when using iiPDF_type=7 (new hybrid) * Fixing python API * Changing name of compute_xp3 to diagnose_xp3 and moving a1_coef and a3_coef calculation back into advance routines * Fixes for GPU code 2026-06-03 22:52:27 -05000be32f96d2f5c4ce974c17fbc82912d516b68bafClubb organization part3 (#1306)editclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/f2py_fortran_wrappers/sigma_sqd_w_module_wrapper.F90editclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditsrc/CLUBB_core/mixing_length.F90editclubb_python_api/clubb_f2py.pyfeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editsrc/CLUBB_core/advance_helper_module.F90editclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/CLUBB_core/sigma_sqd_w_module.F90editclubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editsrc/CLUBB_core/advance_xp3_module.F90editclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_jax/advance_clubb_core.pyeditsrc/CLUBB_core/new_hybrid_pdf_main.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/CLUBB_core/pdf_closure_module.F90editclubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90editsrc/CLUBB_core/Skx_module.F90editclubb_python_api/tests/test_call_tree_advance_xp3.pyeditclubb_jax/advance_clubb_to_end.pyeditclubb_python_api/tests/test_call_tree_meta.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/skx_module_wrapper.F90editclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editclubb_python_api/f2py_fortran_wrappers/mixing_length_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pyutilities/convert_to_async.pyjenkins_tests/clubb_gpu_async_output_matching/Jenkinsfile8164a32e6256c0d21d4ecc9506117d79a7aaf0471780545161000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGPU async script (#1307) * Adding script that converts openacc directives to use async clauses and jenkins test to test that adding them does not change BFBness * Small cleanup - fixing typo and adding comments. 2026-06-03 22:52:41 -05008164a32e6256c0d21d4ecc9506117d79a7aaf047GPU async script (#1307)addutilities/convert_to_async.pyaddjenkins_tests/clubb_gpu_async_output_matching/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse535http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/535/533http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/533/Started by an SCM change5334f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/master4f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/master4f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#53398695107644clubb_BFB_r8029_flags_gfortran_test #533533false5334228SUCCESS1780475229908http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/533/clubb_jax/JAX_CONVERSION_PLAN.md4f132e2cf1bea29284b46b82a0b5006a2b23249a1780435588000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate JAX conversion plan for clarity and detail Clarified the role of clubb_python_api in the conversion process and improved the description of the test harness functionality. 2026-06-02 16:26:28 -05004f132e2cf1bea29284b46b82a0b5006a2b23249aUpdate JAX conversion plan for clarity and detaileditclubb_jax/JAX_CONVERSION_PLAN.mdgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse534http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/534/532http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/532/Started by user Gunther HueblerhueblerGunther Huebler532fb12cc1c0be895d2db030ceed981bc5121277b0efb12cc1c0be895d2db030ceed981bc5121277b0erefs/remotes/origin/masterfb12cc1c0be895d2db030ceed981bc5121277b0efb12cc1c0be895d2db030ceed981bc5121277b0erefs/remotes/origin/masterfb12cc1c0be895d2db030ceed981bc5121277b0efb12cc1c0be895d2db030ceed981bc5121277b0erefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#53274305107644clubb_BFB_r8029_flags_gfortran_test #532532false5324090SUCCESS1779992338350http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/532/READMEfb12cc1c0be895d2db030ceed981bc5121277b0e1779992322000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThe last commit should've been marked as non-BFB since it corrected a crashing bug - so comparing output to no output caused the output to be considered different. This was missed because the BFB checking tests didn't fail, and that was because the commit that caused the crashing was marked non-BFB, so an unusual combo. In general though any commit that fixes crashing behavior should be labelled as bit changing. RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0 2026-05-28 13:18:42 -0500fb12cc1c0be895d2db030ceed981bc5121277b0eThe last commit should've been marked as non-BFB since it corrected a crashing bug - so comparing output to no output caused the output to be considered different. This was missed because the BFB checking tests didn't fail, and that was because the commit that caused the crashing was marked non-BFB, so an unusual combo. In general though any commit that fixes crashing behavior should be labelled as bit changing. RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0editREADMEgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse533http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/533/531http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/531/Started by an SCM change53173dc365c77ab4bf2405d753f167307ae9be330a073dc365c77ab4bf2405d753f167307ae9be330a0refs/remotes/origin/master73dc365c77ab4bf2405d753f167307ae9be330a073dc365c77ab4bf2405d753f167307ae9be330a0refs/remotes/origin/master73dc365c77ab4bf2405d753f167307ae9be330a073dc365c77ab4bf2405d753f167307ae9be330a0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5312309468107644clubb_BFB_r8029_flags_gfortran_test #531531false5314044FAILURE1779956923445http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/531/src/CLUBB_core/advance_clubb_core_module.F9073dc365c77ab4bf2405d753f167307ae9be330a01779907751000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving unneccesary wp2_zt conversion that should've been removed already, but was accidentally added back in the last PR when trying to split BFB from non-BFB changes. This was an unused local variable so this does not affect anything. 2026-05-27 13:49:11 -050073dc365c77ab4bf2405d753f167307ae9be330a0Removing unneccesary wp2_zt conversion that should've been removed already, but was accidentally added back in the last PR when trying to split BFB from non-BFB changes. This was an unused local variable so this does not affect anything.editsrc/CLUBB_core/advance_clubb_core_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse532http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/532/530http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/530/Started by an SCM change5307b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/master7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/master7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5301275511107644clubb_BFB_r8029_flags_gfortran_test #530530false5303927SUCCESS1779870429284http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/530/clubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp3_module.F90clubb_jax/advance_clubb_core.pyclubb_python_api/clubb_python/clubb_api.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/clubb_python/CLUBB_core/advance_helper.pysrc/CLUBB_core/stats_clubb_utilities.F90clubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pysrc/CLUBB_core/advance_helper_module.F90clubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pysrc/G_unit_test_types/spurious_source_test.F90clubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90clubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pysrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_clubb_core_module.F90clubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb1779832578000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb organization part2 (#1304) A number of fields were being calculated in `advance_clubb_core` (`wp2_zt` `wp3_on_wp2` `wp3_on_wp2_zt` `Skw_zm` `Skw_zt) then passed into other routines, however, all these fields depend on `wp2` and were not being updated after `wp2` was being updated by `calc_sfc_varnce`. This commit fixes that by moving where these fields are calculated - instead of computing in `advance_clubb_core` with the incoming `wp2`, we now calculate them "on-demand" where they are needed using the most recent value of `wp2`. Using our default flag set, there are no numerical differences caused by this change set, only a few stats differences. There are real differences that occur when `l_upwind_xpyp_ta = .false.` (a clubb_config_flag value) or when `l_explicit_turbulent_adv_xpyp = .true.` (a parameter in model_flags.F90), but these are small differences and do not visually affect plots for our stable cases. Changing the order of the `advance_` routines would also cause this to be BIT_CHANGING, since that also affects the update path for `wp2` - now these values that got moved would be using the newest `wp2` instead of being "stale", also causing small (but real) differences. * Calculating wp2_zt and wp3_on_wp2 where needed, rather than passing those values around through advance_clubb_core. This is BIT_CHANGING for a handful of stats only variables be default: wp3_on_wp2, wp3_on_wp2_zt, wp3_on_wp2_cfl_num, term_wprtp2_explicit, term_wprtpthlp_explicit, and term_wpthlp2_explicit. Some Skw_ variables when using lmm_stepping, and has actual differences (not just in stats output) when swapping the order of the advance routines * Moving things around, this seems to all be BFB except for the Skw_ movements, which is BIT_CHANGING if the advance_ order changes * Fixing python API * Reverting some BFB changes 2026-05-26 16:56:18 -05007b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbClubb organization part2 (#1304)editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editclubb_jax/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditsrc/CLUBB_core/stats_clubb_utilities.F90editclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/tests/test_call_tree_advance_xp3.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditsrc/CLUBB_core/advance_wp2_wp3_module.F90editclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editsrc/CLUBB_core/advance_helper_module.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/advance_xp3_module.F90editclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse531http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/531/529http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/529/Started by an SCM change529f6869b072b6d6628b04508169a17c757c2ebddc5f6869b072b6d6628b04508169a17c757c2ebddc5refs/remotes/origin/masterf6869b072b6d6628b04508169a17c757c2ebddc5f6869b072b6d6628b04508169a17c757c2ebddc5refs/remotes/origin/masterf6869b072b6d6628b04508169a17c757c2ebddc5f6869b072b6d6628b04508169a17c757c2ebddc5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#529239940107644clubb_BFB_r8029_flags_gfortran_test #529529false5293846SUCCESS1779524826013http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/529/cmake/toolchains/darwin_arm64_gcc.cmakeBUILD.mdcmake/toolchains/darwin_x86_64_gfortran.cmakecmake/toolchains/darwin_arm64_gfortran.cmakecompile.pycmake/deps/NetcdfFortranDependency.cmakef6869b072b6d6628b04508169a17c757c2ebddc51779480188000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comImprovements to get clubb working on mac (#1305) 2026-05-22 15:03:08 -0500f6869b072b6d6628b04508169a17c757c2ebddc5Improvements to get clubb working on mac (#1305)deletecmake/toolchains/darwin_arm64_gfortran.cmakeaddcmake/toolchains/darwin_arm64_gcc.cmakeeditBUILD.mdeditcompile.pyeditcmake/deps/NetcdfFortranDependency.cmakedeletecmake/toolchains/darwin_x86_64_gfortran.cmakegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse530http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/530/528http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/528/Started by an SCM change5288244162bdb14e97ce64bf9b5961dc91e6ba442b48244162bdb14e97ce64bf9b5961dc91e6ba442b4refs/remotes/origin/master8244162bdb14e97ce64bf9b5961dc91e6ba442b48244162bdb14e97ce64bf9b5961dc91e6ba442b4refs/remotes/origin/master8244162bdb14e97ce64bf9b5961dc91e6ba442b48244162bdb14e97ce64bf9b5961dc91e6ba442b4refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5281650635107644clubb_BFB_r8029_flags_gfortran_test #528528false5283764SUCCESS1779265626769http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/528/src/CLUBB_core/pdf_closure_module.F908244162bdb14e97ce64bf9b5961dc91e6ba442b41779217968000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving a couple variables from openacc statements to fix the clubb_driver_test - these were causing stats errors on the GPU for chi and chip2. This is technically BIT_CHANGING. 2026-05-19 14:12:48 -05008244162bdb14e97ce64bf9b5961dc91e6ba442b4Removing a couple variables from openacc statements to fix the clubb_driver_test - these were causing stats errors on the GPU for chi and chip2. This is technically BIT_CHANGING.editsrc/CLUBB_core/pdf_closure_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse529http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/529/527http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/527/Started by an SCM change527a1acd2bad4630dc5f48adc31966bc720b915d0e5a1acd2bad4630dc5f48adc31966bc720b915d0e5refs/remotes/origin/mastera1acd2bad4630dc5f48adc31966bc720b915d0e5a1acd2bad4630dc5f48adc31966bc720b915d0e5refs/remotes/origin/mastera1acd2bad4630dc5f48adc31966bc720b915d0e5a1acd2bad4630dc5f48adc31966bc720b915d0e5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5271711518107644clubb_BFB_r8029_flags_gfortran_test #527527false5273669SUCCESS1779179230317http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/527/clubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90clubb_jax/advance_clubb_core.pysrc/CLUBB_core/pdf_closure_module.F90clubb_jax/advance_clubb_to_end.pyrun_scripts/run_bindiff_w_flags_config_core_flags.jsonclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyLLM_prompts/update_python_api_and_drivers.mdsrc/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_clubb_core_module.F90clubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_driver/advance_clubb_core.pysrc/CLUBB_core/stats_clubb_utilities.F90clubb_python_api/clubb_f2py.pyfa1acd2bad4630dc5f48adc31966bc720b915d0e51779161553000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb organization part1 (#1302) * More organization. Also moving some stats calls inside of pdf_closure_driver, which is BIT_CHANGING, but only for stats output and only when ipdf_call_placement=ipdf_pre_post_advance_fields * Adding new flag set for testing * Fixing python API and updating prompt 2026-05-18 22:32:33 -0500a1acd2bad4630dc5f48adc31966bc720b915d0e5Clubb organization part1 (#1302)editLLM_prompts/update_python_api_and_drivers.mdeditrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditsrc/CLUBB_core/mixing_length.F90editclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditsrc/CLUBB_core/pdf_closure_module.F90editclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editclubb_python_api/clubb_f2py.pyfeditsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_jax/advance_clubb_to_end.pyeditsrc/CLUBB_core/stats_clubb_utilities.F90editclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_jax/advance_clubb_core.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse528http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/528/526http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/526/Started by an SCM change52677d989d6d7397187825e263ed404e956c759874977d989d6d7397187825e263ed404e956c7598749refs/remotes/origin/master77d989d6d7397187825e263ed404e956c759874977d989d6d7397187825e263ed404e956c7598749refs/remotes/origin/master77d989d6d7397187825e263ed404e956c759874977d989d6d7397187825e263ed404e956c7598749refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#526736935107644clubb_BFB_r8029_flags_gfortran_test #526526false5263568SUCCESS1778833627074http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/526/src/CLUBB_core/advance_windm_edsclrm_module.F9077d989d6d7397187825e263ed404e956c75987491778783426000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis fixes the GPU BFB test that failed due to stats-only differences in rtm_ed and thlm_ed, and as a result is technically BIT_CHANGING. Also, the BFB with varying flags failed because flag set 1 changed to use the lapack solvers since the custom ones it set before are now default. RESOLVED:34c6bb07afb6e445f60ea87dcc632969086f9fa1 2026-05-14 13:30:26 -050077d989d6d7397187825e263ed404e956c7598749This fixes the GPU BFB test that failed due to stats-only differences in rtm_ed and thlm_ed, and as a result is technically BIT_CHANGING. Also, the BFB with varying flags failed because flag set 1 changed to use the lapack solvers since the custom ones it set before are now default. RESOLVED:34c6bb07afb6e445f60ea87dcc632969086f9fa1editsrc/CLUBB_core/advance_windm_edsclrm_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse527http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/527/525http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/525/Started by an SCM change52534c6bb07afb6e445f60ea87dcc632969086f9fa134c6bb07afb6e445f60ea87dcc632969086f9fa1refs/remotes/origin/master34c6bb07afb6e445f60ea87dcc632969086f9fa134c6bb07afb6e445f60ea87dcc632969086f9fa1refs/remotes/origin/master34c6bb07afb6e445f60ea87dcc632969086f9fa134c6bb07afb6e445f60ea87dcc632969086f9fa1refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5251838435107644clubb_BFB_r8029_flags_gfortran_test 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cleanup (#1301) * BFB cleanup stuff * Adding some helper routines * More BFB changes * More BFB changes * More BFB changes * More BFB changes * Fixing python API and adding an agent file and a prompt to fix python API in the future. * Updating scripts and improving formatting * Updating some scripts and adding new jenkins test to compare the current branch vs master with flags * Restoring BFBness when using l_lmm_stepping=.true. by reimplementing an existing bug... * Making run_clubb_w_varying_flags.py not remove output, it's just unneccesary * Simplifying script changes * Jenkins script update * Little consolidation of code in pdf_closure_driver * Fixing python API * Fixing parameterization_check formatting 2026-05-13 15:00:40 -050034c6bb07afb6e445f60ea87dcc632969086f9fa1advance_clubb_core cleanup (#1301)editclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditsrc/CLUBB_core/advance_windm_edsclrm_module.F90addLLM_prompts/fortran_routine_formatting.mdeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pyeditsrc/Microphys/morrison_microphys_module.F90editsrc/CLUBB_core/mixing_length.F90editclubb_python_api/tests/test_call_tree_advance_xp3.pyeditsrc/CLUBB_core/advance_xp3_module.F90editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/CLUBB_core/numerical_check.F90editclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90addLLM_prompts/update_python_api_and_drivers.mdeditclubb_python_api/f2py_fortran_wrappers/sigma_sqd_w_module_wrapper.F90editsrc/error.F90editclubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90editclubb_python_api/tests/test_call_tree_meta.pyeditsrc/CLUBB_core/Skx_module.F90editclubb_python_api/tests/test_advance_core_subs.pyeditsrc/CLUBB_core/pdf_closure_module.F90editsrc/CLUBB_core/sigma_sqd_w_module.F90editclubb_python_api/tests/test_python_port_api_coverage.pyeditclubb_python_api/clubb_f2py.pyfeditrun_scripts/run_bindiff_varying_flags_output.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/f2py_fortran_wrappers/skx_module_wrapper.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editclubb_jax/advance_clubb_to_end.pyeditclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyeditrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditsrc/CLUBB_core/advance_helper_module.F90editclubb_python_api/tests/test_call_tree_numerical_check.pyaddLLM_prompts/SHORTCUTS.mdeditclubb_jax/advance_clubb_core.pyaddAGENTS.mdeditsrc/CLUBB_core/clip_explicit.F90editclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyaddjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfileeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/skx_module.pyeditclubb_python_api/tests/test_call_tree_skx.pyeditclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90editclubb_python_api/tests/test_call_tree_splat.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyeditclubb_python_api/f2py_fortran_wrappers/numerical_check_wrapper.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_driver/advance_clubb_to_end.pyeditclubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90editrun_scripts/run_clubb_w_varying_flags.pyeditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/grid_adaptation_module.F90editsrc/Radiation/bugsrad_driver.F90editclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditrun_scripts/run_bindiff_w_flags.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse526http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/526/524http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/524/Started by an SCM change5242fe6e56761356da5b20a7fba14c72ec69fdc9d022fe6e56761356da5b20a7fba14c72ec69fdc9d02refs/remotes/origin/master2fe6e56761356da5b20a7fba14c72ec69fdc9d022fe6e56761356da5b20a7fba14c72ec69fdc9d02refs/remotes/origin/master2fe6e56761356da5b20a7fba14c72ec69fdc9d022fe6e56761356da5b20a7fba14c72ec69fdc9d02refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#524136516107644clubb_BFB_r8029_flags_gfortran_test #524524false5243346SUCCESS1778228828513http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/524/clubb_jax/advance_clubb_to_end.pyclubb_python_driver/advance_clubb_to_end.py2fe6e56761356da5b20a7fba14c72ec69fdc9d021778175927000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSwitching default call to advance_clubb_core in python and jax drivers to use the python api version, rather than the python ported version. 2026-05-07 12:45:27 -05002fe6e56761356da5b20a7fba14c72ec69fdc9d02Switching default call to advance_clubb_core in python and jax drivers to use the python api version, rather than the python ported version.editclubb_jax/advance_clubb_to_end.pyeditclubb_python_driver/advance_clubb_to_end.pygithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse525http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/525/523http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/523/Started by user Gunther HueblerhueblerGunther Huebler5235e3cfdd6efddf098dbddb41a5848e3ef4189aac85e3cfdd6efddf098dbddb41a5848e3ef4189aac8refs/remotes/origin/master5e3cfdd6efddf098dbddb41a5848e3ef4189aac85e3cfdd6efddf098dbddb41a5848e3ef4189aac8refs/remotes/origin/master5e3cfdd6efddf098dbddb41a5848e3ef4189aac85e3cfdd6efddf098dbddb41a5848e3ef4189aac8refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#52386865107644clubb_BFB_r8029_flags_gfortran_test 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#521521false5213203FAILURE1778019410402http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/521/clubb_jax/advance_clubb_core.pyclubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfilejenkins_tests/clubb_driver_test/Jenkinsfileclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pysrc/CLUBB_core/advance_clubb_core_module.F90clubb_python_api/tests/test_advance_core_subs.pysrc/CLUBB_core/advance_windm_edsclrm_module.F90jenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfileclubb_python_driver/advance_clubb_core.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyabccbb5bc06909c50b6645028674a3461f0bf0ab1778019270000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing python api and python/jax driver. Also fixing bug that caused non-BFBness in stats outputs (only upwp_cl/vpwp_cl) when using l_predict_upwp_vpwp=.false., and adding ulimit -s 8388608 to fix GPU test (though it's unclear why exactly we need this all of a sudden for this test). RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b 2026-05-05 17:14:30 -0500abccbb5bc06909c50b6645028674a3461f0bf0abFixing python api and python/jax driver. Also fixing bug that caused non-BFBness in stats outputs (only upwp_cl/vpwp_cl) when using l_predict_upwp_vpwp=.false., and adding ulimit -s 8388608 to fix GPU test (though it's unclear why exactly we need this all of a sudden for this test). RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0beditclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditjenkins_tests/clubb_driver_test/Jenkinsfileeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditjenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfileeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyeditclubb_jax/advance_clubb_core.pyeditclubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditjenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfileeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse522http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/522/520http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/520/Started by an SCM change520f146255f50732c445ccbd012ca45888a9ce44d0bf146255f50732c445ccbd012ca45888a9ce44d0brefs/remotes/origin/masterf146255f50732c445ccbd012ca45888a9ce44d0bf146255f50732c445ccbd012ca45888a9ce44d0brefs/remotes/origin/masterf146255f50732c445ccbd012ca45888a9ce44d0bf146255f50732c445ccbd012ca45888a9ce44d0brefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5201042249107644clubb_BFB_r8029_flags_gfortran_test #520520false5203141FAILURE1777969626737http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/520/src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/G_unit_test_types/spurious_source_test.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/CLUBB_core/clip_explicit.F90src/Microphys/pdf_hydromet_microphys_wrapper.F90src/CLUBB_core/advance_xp2_xpyp_module.F90643d128a5613019595aecd643f1028e937ad4b761777923494000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClip covar simplifications (#1297) * Initial clip covar changes * Slightly nicer clipping count behavior 2026-05-04 14:38:14 -0500643d128a5613019595aecd643f1028e937ad4b76Clip covar simplifications (#1297)editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/clip_explicit.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90src/clubb_driver.F90READMEcmake/deps/NetcdfFortranDependency.cmakesrc/CMakeLists.txtrun_scripts/READMEpostprocessing/plotgen/cases/READMEcompile.pyrun_scripts/run_scm.pyf146255f50732c445ccbd012ca45888a9ce44d0b1777938051000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comCmake netcdf fallback (#1294) * WIP: Compile w/o NetCDF - Currently failing from a 'version' error, but actually it's because the fortran cmake is testing a small c program to test functionality, but the C hasn't been built yet * CMake configuration phase works for netcdf, but build fails * Compiles almost all the way and has the executable clubb_standalone * No errors to compile w/o netcdf - CMake configure and build phase ran with no errors - Clubb was functional after the build * Fixed to work as a fresh user - Worked with no netcdf and a clean clone of this branch * Added blank line * Got compile.py to run on gfortran, nvhpc, ifort, ifx - Needs testing for with/without netcdf pre-installed * Fixed compiler logic - Basically, if not matching the default (gfortran) netcdf, and can't find a different one, then go from scratch. * Small bug fixes * Cleaned up code, all lines less than 100 characters * Commented through code * Removing redundancy * Fixes to make -gptl flag work * Improved comments, replaced .bash with .py in readme's 2026-05-04 18:40:51 -0500f146255f50732c445ccbd012ca45888a9ce44d0bCmake netcdf fallback (#1294)editpostprocessing/plotgen/cases/READMEeditsrc/CMakeLists.txteditrun_scripts/READMEeditcompile.pyeditrun_scripts/run_scm.pyeditsrc/clubb_driver.F90editREADMEeditcmake/deps/NetcdfFortranDependency.cmakegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse521http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/521/519http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/519/Started by an SCM change5192bac827cd3b91b3437ca62918583938237c9fd032bac827cd3b91b3437ca62918583938237c9fd03refs/remotes/origin/master2bac827cd3b91b3437ca62918583938237c9fd032bac827cd3b91b3437ca62918583938237c9fd03refs/remotes/origin/master2bac827cd3b91b3437ca62918583938237c9fd032bac827cd3b91b3437ca62918583938237c9fd03refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5191720028107644clubb_BFB_r8029_flags_gfortran_test #519519false5193044SUCCESS1775723227878http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/519/clubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyclubb_python_api/clubb_python/string_conversion.pyclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pya142b32188f7388ce905ee833c55abff306fb8121775676953000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall fix to python api string handling. There was an issue that crept up with this when running on mitch - this should make the string/char array handling more robust 2026-04-08 14:35:53 -0500a142b32188f7388ce905ee833c55abff306fb812Small fix to python api string handling. There was an issue that crept up with this when running on mitch - this should make the string/char array handling more robusteditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyaddclubb_python_api/clubb_python/string_conversion.pyeditclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/tests/test_hello_world.pyclubb_python_api/f2py_fortran_wrappers/stats_netcdf_wrapper.F90clubb_python_api/tests/test_string_conversion.pyclubb_python_api/tests/test_call_tree_t_in_k_module.pyclubb_python_api/f2py_fortran_wrappers/parameters_tunable_wrapper.F90dc7d6ed92e27f14e4e64769a67a09a63b27833101775681164000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPython update (#1291) * Possibly better string fix for python API * Little test changes 2026-04-08 15:46:04 -0500dc7d6ed92e27f14e4e64769a67a09a63b2783310Python update (#1291)editclubb_python_api/f2py_fortran_wrappers/parameters_tunable_wrapper.F90addclubb_python_api/tests/test_string_conversion.pydeleteclubb_python_api/tests/test_hello_world.pyeditclubb_python_api/f2py_fortran_wrappers/stats_netcdf_wrapper.F90editclubb_python_api/clubb_f2py.pyfaddclubb_python_api/tests/test_call_tree_t_in_k_module.pysrc/CLUBB_core/CMakeLists.txt0ab371ba28cf647f279567c04786ddc925aa5a871775682381000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove line to test python scripts 2026-04-08 16:06:21 -05000ab371ba28cf647f279567c04786ddc925aa5a87Remove line to test python scriptseditsrc/CLUBB_core/CMakeLists.txtsrc/CLUBB_core/CMakeLists.txt2bac827cd3b91b3437ca62918583938237c9fd031775696339000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line to test python scripts 2026-04-08 19:58:59 -05002bac827cd3b91b3437ca62918583938237c9fd03Add blank line to test python scriptseditsrc/CLUBB_core/CMakeLists.txtgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse520http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/520/518http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/518/Started by an SCM change518475e7687de4f2ba141334ba0046a2175b611eb75475e7687de4f2ba141334ba0046a2175b611eb75refs/remotes/origin/master475e7687de4f2ba141334ba0046a2175b611eb75475e7687de4f2ba141334ba0046a2175b611eb75refs/remotes/origin/master475e7687de4f2ba141334ba0046a2175b611eb75475e7687de4f2ba141334ba0046a2175b611eb75refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5181004334107644clubb_BFB_r8029_flags_gfortran_test #518518false5182956SUCCESS1775636828404http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/518/src/CLUBB_core/stats_netcdf.F90clubb_python_api/f2py_fortran_wrappers/stats_netcdf_wrapper.F90src/clubb_driver.F904f6fb3897c84478095520db9d61b33b888711b3d1775592422000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding err_info back to stats_end_timestep_api 2026-04-07 15:07:02 -05004f6fb3897c84478095520db9d61b33b888711b3dAdding err_info back to stats_end_timestep_apieditsrc/CLUBB_core/stats_netcdf.F90editclubb_python_api/f2py_fortran_wrappers/stats_netcdf_wrapper.F90editsrc/clubb_driver.F90src/CLUBB_core/mono_flux_limiter.F90run_scripts/test_monoflux_limiter_GPU.py3f405544d0d3692a822e9f58ae679938d62c6de11775594520000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing monoflux limiter test - there was a comment that was split across lines, which broke the test 2026-04-07 15:42:00 -05003f405544d0d3692a822e9f58ae679938d62c6de1Fixing monoflux limiter test - there was a comment that was split across lines, which broke the testeditsrc/CLUBB_core/mono_flux_limiter.F90editrun_scripts/test_monoflux_limiter_GPU.pysrc/CLUBB_core/stats_netcdf.F9015adc8422c4d13004afb02c87d35a590361ead7e1775594819000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving unused variable 2026-04-07 15:46:59 -050015adc8422c4d13004afb02c87d35a590361ead7eRemoving unused variableeditsrc/CLUBB_core/stats_netcdf.F90compile.py475e7687de4f2ba141334ba0046a2175b611eb751775594870000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding -fresh flag to compile.py to remove the previous build before compiling 2026-04-07 15:47:50 -0500475e7687de4f2ba141334ba0046a2175b611eb75Adding -fresh flag to compile.py to remove the previous build before compilingeditcompile.pygithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse519http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/519/517http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/517/Started by an SCM change517adfc58ffc5ad4d9bef00fc5e766b6d5a52079d8eadfc58ffc5ad4d9bef00fc5e766b6d5a52079d8erefs/remotes/origin/masteradfc58ffc5ad4d9bef00fc5e766b6d5a52079d8eadfc58ffc5ad4d9bef00fc5e766b6d5a52079d8erefs/remotes/origin/masteradfc58ffc5ad4d9bef00fc5e766b6d5a52079d8eadfc58ffc5ad4d9bef00fc5e766b6d5a52079d8erefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5171197888107644clubb_BFB_r8029_flags_gfortran_test #517517false5172836SUCCESS1775550428131http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/517/License.txt9d56b4d0695c86980a6bfaaf9567449dbc4ccabd1775500093000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSpace change for little test 2026-04-06 13:28:13 -05009d56b4d0695c86980a6bfaaf9567449dbc4ccabdSpace change for little testeditLicense.txtsrc/CLUBB_core/advance_wp2_wp3_module.F90src/Microphys/KK_microphys/CMakeLists.txtsrc/Microphys/parameters_microphys.F90cmake/utils/CompilerWarnings.cmakesrc/CLUBB_core/mean_adv.F90src/CLUBB_core/pdf_utilities.F90src/CLUBB_core/pdf_parameter_module.F90src/CLUBB_core/sfc_varnce_module.F90CMakeLists.txtsrc/CLUBB_core/sponge_layer_damping.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/model_flags.F90utilities/check_for_missing_threadprivate.pysrc/G_unit_test_types/pdf_parameter_tests.F90src/CLUBB_core/penta_bicgstab_solver.F90src/CLUBB_core/parameters_tunable.F90src/generalized_grid_test.F90src/Microphys/Morrison_microphys/CMakeLists.txtsrc/SILHS/latin_hypercube_driver_module.F90src/Microphys/morrison_microphys_module.F90src/Microphys/KK_microphys/parameters_KK.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/clubb_api_module.F90src/Lapack/Lapack_shared/CMakeLists.txtsrc/G_unit_test_types/rev_direction_grid_test.F90src/CLUBB_core/interpolation.F90src/CLUBB_core/stats_netcdf.F90src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90src/Benchmark_cases/dycoms2_rf02.F90src/Microphys/pdf_hydromet_microphys_wrapper.F90src/Benchmark_cases/mpace_b.F90src/CLUBB_core/hydromet_pdf_parameter_module.F90compile.pysrc/Radiation/parameters_radiation.F90src/G_unit_test_types/spurious_source_test.F90utilities/READMEsrc/Microphys/CMakeLists.txtsrc/SILHS/silhs_api_module.F90src/G_unit_test_types/read_corr_mtx_test.F90src/CLUBB_core/numerical_check.F90src/CLUBB_core/advance_clubb_core_module.F90src/Microphys/COAMPS_microphys/CMakeLists.txtsrc/jacobian.F90src/clubb_driver.F90src/CLUBB_core/corr_varnce_module.F90src/Input_fields/recl.incsrc/CLUBB_core/fill_holes.F90src/Benchmark_cases/neutral_case.F90src/Microphys/microphys_driver.F90src/Radiation/radiation_module.F90src/Benchmark_cases/lba.F90compile/compile.bashsrc/Radiation/simple_rad_module.F90src/CLUBB_core/pdf_closure_module.F90src/Microphys/KK_microphys/KK_upscaled_turbulent_sed.F90src/CLUBB_core/grid_class.F90src/Radiation/radiation_variables_module.F90src/CLUBB_core/array_index.F90src/Benchmark_cases/wangara.F90src/Benchmark_cases/time_dependent_input.F90src/G_unit_test_types/tuner_tests.F90src/CLUBB_core/error_code.F90src/clubb_tuner.F90src/Microphys/advance_microphys_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/clubb_driver_test.F90src/CLUBB_core/diffusion.F90src/Lapack/Lapack_double/CMakeLists.txtsrc/Microphys/estimate_scm_microphys_module.F90src/CLUBB_core/clip_explicit.F90src/Benchmark_cases/ekman.F90src/Benchmark_cases/gabls2.F90src/SILHS/latin_hypercube_arrays.F90src/Microphys/coamps_microphys_driver_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/Benchmark_cases/bomex.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/Benchmark_cases/prescribe_forcings.F90src/Radiation/BUGSrad/CMakeLists.txtsrc/Lapack/Lapack_single/CMakeLists.txtsrc/CLUBB_core/grid_adaptation_module.F90src/G_unit_test_types/fill_holes_tests.F90src/Microphys/KK_microphys_module.F90utilities/CLUBBStandardsCheck.pysrc/CLUBB_core/stats_clubb_utilities.F90src/Microphys/microphys_interface.incsrc/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/advance_helper_module.F90src/Benchmark_cases/dycoms2_rf01.F90src/Benchmark_cases/rico.F90src/Benchmark_cases/mpace_a.F90src/Microphys/SCM_Activation/CMakeLists.txtsrc/Microphys/gfdl_activation.F90src/CLUBB_core/constants_clubb.F90src/Microphys/silhs_category_variance_module.F90src/error.F90src/CLUBB_core/err_info_type_module.F901e25b23661f4235b8a0484bf76bc542cc1ab5f6d1775502171000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comStandards fix (#1288) * Fixing code to comply with clubb standards and making standards check output a little nicer * Fixing unused variable compiler errors * Removing ifdef GFDL option * A bit of cleanup * Little GPU fix * Making the threadprivate check part of the standards, little script improvements, and adding more code to the standards check and also fixing it * Adding missed cmake files * Improving various subroutine edits 2026-04-06 14:02:51 -05001e25b23661f4235b8a0484bf76bc542cc1ab5f6dStandards fix 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f2py (#1274) * Initial python clubb driver. Currently BFB for bomex. This is using a hugely simplified clubb_driver currently. * Fixes * Making work with cmake, and generalizing for more cases to work (arm, bomex, wangara tested and correct) * Lots of new interfaces, not all complete though. * Bit better structure and read grid_class.py * Improvements, mainly to pdf_closure stack * Making UDTs handled more correctly - lots of python interfaces were missing them as aguements, which is needed for pushing/pulling * Better pdf_params (implicit too) python type * Various cleanup and simplifications * Fixing up argument list orders * Breakup up clubb driver and making real radiation call * Improving run_bindiff script * Small improvements * Folder restructuring * Fixing sclr/edsclr code * Small fixes * Better output directory config and python vs fortran driver test script * Various small improvements to run scripts and dash app * Improvements to sclr/edsclr/hydromet handling using a _transport variable. Most cases (3/8) in run_python_vs_fortran_cases.py matching now with multiple columns. * Various cleanup * Various improvements and cleanup * Sync f2py branch with master radiation changes * Fixing things after merge conflict * Commenting run_bindiff_all better * Small changes and rough draft of README * Improvements to various things * Various improvements and adding a python converted advance_clubb_core for fun * Adding more apis for missed things and a nice script which checks for missed things * Stuctural changes and better READMEs * Little fixes * Aligning inouts/outs * Renaming jenkins test * Adding script * Little tweaks * Small updates * Better readme and api diagram * Better readme and api diagram again * Adding clubb_jax directory, just a copy of the python driver right now with some instructions/tips for the conversion process * Final little changes to readme and renaming various things 2026-04-06 15:22:36 -050014926dd026f178cacec4336a6389e3c59c2eb4d4Clubb f2py 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Hueblerhuebler@uwm.eduLittle fixes for python code 2026-04-06 15:42:22 -05003b604aca0d98b5f656e2be332d3090819f8af59fLittle fixes for python codeeditclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/stats_netcdf_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/matrix_solver_wrapper_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editsrc/Numerical_recipes/amebsa.f90src/CLUBB_core/CMakeLists.txtfeb80b9af098529dd9fb4192368a639bea44bac91775514539000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove blank line to trigger git update script 2026-04-06 17:28:59 -0500feb80b9af098529dd9fb4192368a639bea44bac9Remove blank line to trigger git update scripteditsrc/CLUBB_core/CMakeLists.txtsrc/Lapack/CMakeLists.txt89a78e3c137f74f6b8ed0c02875651646e6b0fd81775514601000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded blank line to trigger git update scripts 2026-04-06 17:30:01 -050089a78e3c137f74f6b8ed0c02875651646e6b0fd8Added blank line to trigger git update scriptseditsrc/Lapack/CMakeLists.txtChanges_M20059d534983ad611d90632f67b0e85b7bf738786c581775514643000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemoved blank line to trigger git update scripts 2026-04-06 17:30:43 -05009d534983ad611d90632f67b0e85b7bf738786c58Removed blank line to trigger git update scriptseditChanges_M2005src/SILHS/CMakeLists.txtea158fd73790b07ad91600595adf0a10f0bccd041775514734000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line to trigger git update scripts 2026-04-06 17:32:14 -0500ea158fd73790b07ad91600595adf0a10f0bccd04Add blank line to trigger git update scriptseditsrc/SILHS/CMakeLists.txtinput/stats/README170ad3f0b10539e37efd2f19c76f51b6bec3a2551775514788000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line to trigger git update scripts 2026-04-06 17:33:08 -0500170ad3f0b10539e37efd2f19c76f51b6bec3a255Add blank line to trigger git update scriptseditinput/stats/READMEinput/tunable_parameters/configurable_model_flags.in8759dedaf6cd411a4d4943c3d8525b022ca009861775514902000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line to trigger git update scripts 2026-04-06 17:35:02 -05008759dedaf6cd411a4d4943c3d8525b022ca00986Add blank line to trigger git update scriptseditinput/tunable_parameters/configurable_model_flags.ingithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse518http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/518/516http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/516/Started by an SCM change516b2e170923249df969fc5b3c0057edce4c1138e7db2e170923249df969fc5b3c0057edce4c1138e7drefs/remotes/origin/masterb2e170923249df969fc5b3c0057edce4c1138e7db2e170923249df969fc5b3c0057edce4c1138e7drefs/remotes/origin/masterb2e170923249df969fc5b3c0057edce4c1138e7db2e170923249df969fc5b3c0057edce4c1138e7drefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5161216999107644clubb_BFB_r8029_flags_gfortran_test #516516false5162734SUCCESS1775464027594http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/516/run_scripts/run_clubb_w_varying_flags.pyrun_scripts/run_scm.bashrun_scripts/run_thread_test.py0c709755aa0cbd9a53923dc8ea2cd62f07913aa61775412294000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduTiny fixes to scripts 2026-04-05 13:04:54 -05000c709755aa0cbd9a53923dc8ea2cd62f07913aa6Tiny fixes to scriptseditrun_scripts/run_clubb_w_varying_flags.pyeditrun_scripts/run_thread_test.pyeditrun_scripts/run_scm.bashrun_scripts/run_clubb_w_varying_flags.pysrc/CLUBB_core/stats_netcdf.F90src/clubb_driver.F90run_scripts/run_bindiff_varying_flags_output.pyrun_scripts/run_scm.pyb2e170923249df969fc5b3c0057edce4c1138e7d1775440060000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMaking run_bindiff_w_flags.py faster by calling run_scm.py directly and parallelizing over all cases/flag sets, rather than just calling run_scm_all.py and parallelizing over each flag batch. Also fixing a little stats bug that caused the time string to have weird trailing characters, and removing a little states print 2026-04-05 20:47:40 -0500b2e170923249df969fc5b3c0057edce4c1138e7dMaking run_bindiff_w_flags.py faster by calling run_scm.py directly and parallelizing over all cases/flag sets, rather than just calling run_scm_all.py and parallelizing over each flag batch. Also fixing a little stats bug that caused the time string to have weird trailing characters, and removing a little states printeditrun_scripts/run_clubb_w_varying_flags.pyeditsrc/CLUBB_core/stats_netcdf.F90editrun_scripts/run_bindiff_varying_flags_output.pyeditsrc/clubb_driver.F90editrun_scripts/run_scm.pygithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse517http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/517/515http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/515/Started by an SCM change515bcbcd985bf11702799629543e90e6e07a95ddbe5bcbcd985bf11702799629543e90e6e07a95ddbe5refs/remotes/origin/masterbcbcd985bf11702799629543e90e6e07a95ddbe5bcbcd985bf11702799629543e90e6e07a95ddbe5refs/remotes/origin/masterbcbcd985bf11702799629543e90e6e07a95ddbe5bcbcd985bf11702799629543e90e6e07a95ddbe5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#515121439107644clubb_BFB_r8029_flags_gfortran_test #515515false5152649SUCCESS1775377628289http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/515/run_scripts/run_clubb_w_varying_flags.pyoutput/.gitignorejenkins_tests/clubb_BFB_varying_flags_gfortran_test/Jenkinsfilerun_scripts/run_bindiff_varying_flags_output.pybcbcd985bf11702799629543e90e6e07a95ddbe51775360437000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comVarying bfb test (#1290) * Adding BFB test with varying flags * Space diff * Script fix * Space diff * Removing output .gitignore, we don't need it and it's annoying 2026-04-04 22:40:37 -0500bcbcd985bf11702799629543e90e6e07a95ddbe5Varying bfb test (#1290)addjenkins_tests/clubb_BFB_varying_flags_gfortran_test/Jenkinsfileaddrun_scripts/run_bindiff_varying_flags_output.pydeleteoutput/.gitignoreeditrun_scripts/run_clubb_w_varying_flags.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse516http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/516/514http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/514/Started by an SCM change514f5fb36fc103a46c7cd19ebbe151163da8ee91c42f5fb36fc103a46c7cd19ebbe151163da8ee91c42refs/remotes/origin/masterf5fb36fc103a46c7cd19ebbe151163da8ee91c42f5fb36fc103a46c7cd19ebbe151163da8ee91c42refs/remotes/origin/masterf5fb36fc103a46c7cd19ebbe151163da8ee91c42f5fb36fc103a46c7cd19ebbe151163da8ee91c42refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#514635330107644clubb_BFB_r8029_flags_gfortran_test #514514false5142525SUCCESS1774340829336http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/514/READMEb0473687b9eb3489e6ce50f8c4ce66419719fc2d1774289904000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduA couple recent commits were missing their bit-changing messages because they were accidentally merged in early, see https://github.com/larson-group/clubb/pull/1286 - this commit is to add the resolve messages for the BFB test - RESOLVED:149e61f9bab26c5cb4518fd7bada9b1f4064482e RESOLVED:9f2b1e6c9370a897e1da1320521fbc27baf6ff31 2026-03-23 13:18:24 -0500b0473687b9eb3489e6ce50f8c4ce66419719fc2dA couple recent commits were missing their bit-changing messages because they were accidentally merged in early, see https://github.com/larson-group/clubb/pull/1286 - this commit is to add the resolve messages for the BFB test - RESOLVED:149e61f9bab26c5cb4518fd7bada9b1f4064482e RESOLVED:9f2b1e6c9370a897e1da1320521fbc27baf6ff31editREADMEsrc/CLUBB_core/advance_wp2_wp3_module.F90src/G_unit_test_types/spurious_source_test.F90src/generalized_grid_test.F90src/CLUBB_core/grid_class.F90src/CLUBB_core/numerical_check.F90src/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/CLUBB_core/matrix_solver_wrapper.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/mono_flux_limiter.F90src/CLUBB_core/grid_adaptation_module.F90f5fb36fc103a46c7cd19ebbe151163da8ee91c421774297540000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comLittle Fix (#1287) * Making matrix solve checks also trigger if l_implemented is true so that they always are done in CAM, regardless of debug level * Reworking rcond flag in advance_windm * Updating l_implemented flag comments * Adding printouts to make clear where the NaN are (if any) in the soln vector. 2026-03-23 15:25:40 -0500f5fb36fc103a46c7cd19ebbe151163da8ee91c42Little Fix (#1287)editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/matrix_solver_wrapper.F90editsrc/CLUBB_core/numerical_check.F90editsrc/CLUBB_core/grid_class.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/generalized_grid_test.F90editsrc/CLUBB_core/grid_adaptation_module.F90editsrc/CLUBB_core/mono_flux_limiter.F90editsrc/CLUBB_core/mixing_length.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse515http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/515/513http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/513/Started by an SCM change513d9d887857da333c2c683aad09311ffcdb2d54440d9d887857da333c2c683aad09311ffcdb2d54440refs/remotes/origin/masterd9d887857da333c2c683aad09311ffcdb2d54440d9d887857da333c2c683aad09311ffcdb2d54440refs/remotes/origin/masterd9d887857da333c2c683aad09311ffcdb2d54440d9d887857da333c2c683aad09311ffcdb2d54440refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5131423204107644clubb_BFB_r8029_flags_gfortran_test #513513false5132425SUCCESS1774254427879http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/513/src/Radiation/soil_vegetation.F90src/Radiation/bugsrad_driver.F90src/Radiation/simple_rad_module.F90src/CLUBB_core/interpolation.F90src/clubb_driver.F90src/Radiation/radiation_variables_module.F90src/Radiation/radiation_module.F90src/Radiation/rad_lwsw_module.F909f2b1e6c9370a897e1da1320521fbc27baf6ff311774158992000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduGPUizing most of radiation code 2026-03-22 00:56:32 -05009f2b1e6c9370a897e1da1320521fbc27baf6ff31GPUizing most of radiation codeeditsrc/clubb_driver.F90editsrc/Radiation/rad_lwsw_module.F90editsrc/Radiation/radiation_variables_module.F90editsrc/Radiation/radiation_module.F90editsrc/Radiation/soil_vegetation.F90editsrc/Radiation/simple_rad_module.F90editsrc/CLUBB_core/interpolation.F90editsrc/Radiation/bugsrad_driver.F90src/Radiation/radiation_module.F90149e61f9bab26c5cb4518fd7bada9b1f4064482e1774236539000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing multicol radiation stats bug. 2026-03-22 22:28:59 -0500149e61f9bab26c5cb4518fd7bada9b1f4064482eFixing multicol radiation stats bug.editsrc/Radiation/radiation_module.F90dash_app/run_tab/callbacks_runs.pydash_app/run_tab/runtime.pydash_app/run_tab/layout.py0fc97f413d522aabb24db8c4a289aa5e5471256d1774237949000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding max tasks option to dash app 2026-03-22 22:52:29 -05000fc97f413d522aabb24db8c4a289aa5e5471256dAdding max tasks option to dash appeditdash_app/run_tab/callbacks_runs.pyeditdash_app/run_tab/layout.pyeditdash_app/run_tab/runtime.pysrc/generalized_grid_test.F90d9d887857da333c2c683aad09311ffcdb2d544401774239145000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduIncreasing tolerance for check_flipped_results - this is used in the generalized_grid_test when we allow the matrices to be solved in different vertical modes 2026-03-22 23:12:25 -0500d9d887857da333c2c683aad09311ffcdb2d54440Increasing tolerance for check_flipped_results - this is used in the generalized_grid_test when we allow the matrices to be solved in different vertical modeseditsrc/generalized_grid_test.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse514http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/514/512http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/512/Started by an SCM change512d20fd1daad5e5d921607794e258bfde151fd3c89d20fd1daad5e5d921607794e258bfde151fd3c89refs/remotes/origin/masterd20fd1daad5e5d921607794e258bfde151fd3c89d20fd1daad5e5d921607794e258bfde151fd3c89refs/remotes/origin/masterd20fd1daad5e5d921607794e258bfde151fd3c89d20fd1daad5e5d921607794e258bfde151fd3c89refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#512545560107644clubb_BFB_r8029_flags_gfortran_test #512512false5122336SUCCESS1773908825944http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/512/src/Radiation/soil_vegetation.F90src/Radiation/bugsrad_driver.F90src/Radiation/simple_rad_module.F90src/Radiation/BUGSrad/variables_radiation_module.F90src/Radiation/radiation_variables_module.F90src/Radiation/extended_atmosphere_module.F90src/Radiation/BUGSrad/bugs_rad.Fsrc/soil_vegetation.F90src/CLUBB_core/numerical_check.F90compile/file_list/clubb_model_filescompile/file_list/clubb_bugsrad_filessrc/Radiation/CMakeLists.txtsrc/Radiation/BUGSrad/driver_read.Fsrc/clubb_driver.F90src/CMakeLists.txtsrc/Radiation/BUGSrad/CMakeLists.txtsrc/Radiation/radiation_module.F90cbaf3b7cad36f5843a53f7e5ce77943ca7cc64c91773867770000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb radiation update (#1283) * Compartmentalizing radiation code a bit * More compartmentalizing * Pushing loop into bugsrad because it makes things cleaner * Small loop pushes * Little cleanup * Moving soil_veg code * GPU fix and a little cleanup * Missed a file to commit * Making work with old build system * Need zeroing routines for set_case_initial_conditions * Adding comment explaining why advance_soil_veg is being packaged with Radiation code now 2026-03-18 16:02:50 -0500cbaf3b7cad36f5843a53f7e5ce77943ca7cc64c9Clubb radiation update (#1283)editcompile/file_list/clubb_model_filesdeletesrc/Radiation/BUGSrad/variables_radiation_module.F90deletesrc/soil_vegetation.F90editsrc/CMakeLists.txteditsrc/Radiation/bugsrad_driver.F90editsrc/Radiation/BUGSrad/CMakeLists.txteditsrc/Radiation/CMakeLists.txtaddsrc/Radiation/soil_vegetation.F90editcompile/file_list/clubb_bugsrad_fileseditsrc/clubb_driver.F90addsrc/Radiation/radiation_variables_module.F90editsrc/Radiation/BUGSrad/driver_read.Feditsrc/CLUBB_core/numerical_check.F90editsrc/Radiation/extended_atmosphere_module.F90editsrc/Radiation/BUGSrad/bugs_rad.Feditsrc/Radiation/simple_rad_module.F90editsrc/Radiation/radiation_module.F90dash_app/plot_tab/state.pydash_app/assets/33_run_param_rows.jsdash_app/run_tab/tab.pydash_app/plot_tab/case_definitions.pysrc/CLUBB_core/stats_netcdf.F90dash_app/run_tab/callbacks_console.pydash_app/tab_compare.pydash_app/plot_tab/plot_types/registry.pydash_app/plot_tab/plot_types/budget_plot.pydash_app/run_tab/namelist.pydash_app/plot_tab/plot_types/base_plot.pydash_app/tab_run.pydash_app/assets/11_tab_run_theme.cssdash_app/plot_tab/layout.pydash_app/run_tab/callbacks_settings.pydash_app/assets/31_plots_ui_resize.jsdash_app/tab_multicol.pydash_app/plot_tab/callbacks_controls.pydash_app/plot_tab/plot_types/shared.pydash_app/assets/35_plots_keyboard.jsdash_app/run_tab/__init__.pydash_app/plot_tab/plot_types/budget_groups.pydash_app/plot_tab/callbacks_params.pydash_app/plot_tab/__init__.pydash_app/app.pydash_app/assets/10_theme.cssdash_app/run_tab/runtime.pydash_app/plot_tab/plot_types/__init__.pydash_app/run_tab/callbacks_selection.pydash_app/plot_tab/plot_types/profile_plot.pydash_app/run_tab/layout.pydash_app/plot_tab/benchmark_overlay.pydash_app/run_tab/state.pyrun_scripts/run_scm.pydash_app/plot_tab/plot_types/subcolumn_plot.pyrun_scripts/create_multi_col_params.pydash_app/plot_tab/callbacks_grid.pydash_app/run_tab/discovery.pydash_app/case_definitions.pydash_app/plot_tab/plot_types/specs.pydash_app/assets/12_tab_plots_theme.cssdash_app/plot_tab/tab.pydash_app/assets/32_plots_constant_param_rows.jsdash_app/run_tab/callbacks_runs.pydash_app/assets/34_run_param_clientside.jsdash_app/plot_tab/callbacks_case.pydash_app/plot_tab/plot_types/timeseries_plot.pydash_app/plot_tab/plot_types/timeheight_plot.py49bd72c6b6ee57f27c7694b25facd1b0eb91bd091773872129000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comDash app improvements (#1280) * Mainly dash app improvements, but also removing unused args from stats and improving run scripts * Small update to ui in run tab * Improvements to make plotting faster, fixing various bugs, making things more robust, and adding more run modification fields (out_dir/dt_main/etc) * Adding les plotting capabilities, lots of tiny improvements * Reverting run_bindiff_all.py * Tiny quality of life improvements - fixing port conflict, opening in browser automatically, and defaulting to the run_tab instead of requiring a first click 2026-03-18 17:15:29 -050049bd72c6b6ee57f27c7694b25facd1b0eb91bd09Dash app improvements (#1280)adddash_app/plot_tab/plot_types/budget_groups.pyadddash_app/plot_tab/plot_types/budget_plot.pyeditdash_app/assets/11_tab_run_theme.cssdeletedash_app/tab_run.pyadddash_app/run_tab/callbacks_console.pyadddash_app/plot_tab/plot_types/timeseries_plot.pyadddash_app/run_tab/state.pyadddash_app/plot_tab/plot_types/registry.pyeditrun_scripts/create_multi_col_params.pydeletedash_app/tab_multicol.pyeditdash_app/app.pyadddash_app/plot_tab/state.pyadddash_app/run_tab/callbacks_settings.pyadddash_app/plot_tab/case_definitions.pydeletedash_app/tab_compare.pyadddash_app/assets/34_run_param_clientside.jsadddash_app/assets/35_plots_keyboard.jsadddash_app/run_tab/discovery.pyadddash_app/assets/12_tab_plots_theme.cssdeletedash_app/case_definitions.pyadddash_app/plot_tab/__init__.pyadddash_app/plot_tab/tab.pyeditsrc/CLUBB_core/stats_netcdf.F90adddash_app/plot_tab/benchmark_overlay.pyadddash_app/assets/31_plots_ui_resize.jsadddash_app/plot_tab/plot_types/specs.pyeditdash_app/assets/10_theme.cssadddash_app/assets/33_run_param_rows.jsadddash_app/assets/32_plots_constant_param_rows.jsadddash_app/plot_tab/callbacks_controls.pyadddash_app/run_tab/layout.pyadddash_app/run_tab/__init__.pyadddash_app/run_tab/callbacks_selection.pyadddash_app/plot_tab/plot_types/shared.pyadddash_app/plot_tab/plot_types/timeheight_plot.pyadddash_app/run_tab/namelist.pyadddash_app/run_tab/tab.pyeditrun_scripts/run_scm.pyadddash_app/run_tab/runtime.pyadddash_app/plot_tab/plot_types/profile_plot.pyadddash_app/plot_tab/plot_types/__init__.pyadddash_app/plot_tab/callbacks_params.pyadddash_app/plot_tab/plot_types/base_plot.pyadddash_app/run_tab/callbacks_runs.pyadddash_app/plot_tab/callbacks_grid.pyadddash_app/plot_tab/callbacks_case.pyadddash_app/plot_tab/plot_types/subcolumn_plot.pyadddash_app/plot_tab/layout.pysrc/G_unit_test_types/spurious_source_test.F90d3c5a22e8d71e7224d34ffe7c7d2276679df74921773882901000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduNow that the adg1_ routines prevent below threshold wp2 and xp2 values, we also need these max statements in this unit test too 2026-03-18 20:15:01 -0500d3c5a22e8d71e7224d34ffe7c7d2276679df7492Now that the adg1_ routines prevent below threshold wp2 and xp2 values, we also need these max statements in this unit test tooeditsrc/G_unit_test_types/spurious_source_test.F90run_scripts/run_bindiff_all.pyd20fd1daad5e5d921607794e258bfde151fd3c891773884674000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPrevious commit (49bd72c6b6ee57f27c7694b25facd1b0eb91bd09) fixed a stats bug that caused parameter names to not be stored in the netcdf file - so now run_bindiff_all.py has to ignore those. Fixed by ignoring all non-numeric variables. 2026-03-18 20:44:34 -0500d20fd1daad5e5d921607794e258bfde151fd3c89Previous commit (49bd72c6b6ee57f27c7694b25facd1b0eb91bd09) fixed a stats bug that caused parameter names to not be stored in the netcdf file - so now run_bindiff_all.py has to ignore those. Fixed by ignoring all non-numeric variables.editrun_scripts/run_bindiff_all.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse513http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/513/511http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/511/Started by an SCM change511bdee6e6dbac76a996cdf73a88522c47affdd4d90bdee6e6dbac76a996cdf73a88522c47affdd4d90refs/remotes/origin/masterbdee6e6dbac76a996cdf73a88522c47affdd4d90bdee6e6dbac76a996cdf73a88522c47affdd4d90refs/remotes/origin/masterbdee6e6dbac76a996cdf73a88522c47affdd4d90bdee6e6dbac76a996cdf73a88522c47affdd4d90refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5111549324107644clubb_BFB_r8029_flags_gfortran_test #511511false5112210SUCCESS1773822428423http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/511/jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfilejenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile02123793194ca95295bbd90c35129faf395b95251773771251000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduToolchain names were changed, so the references to them should've changed in the jenkins tests. 2026-03-17 13:14:11 -050002123793194ca95295bbd90c35129faf395b9525Toolchain names were changed, so the references to them should've changed in the jenkins tests.editjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileeditjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfilerun_scripts/test_monoflux_limiter_GPU.py36ca61e3203b201832c5ca74ce764fc7e97786a81773771352000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduToolchain names were changed, so the references to them should've changed in this test too. 2026-03-17 13:15:52 -050036ca61e3203b201832c5ca74ce764fc7e97786a8Toolchain names were changed, so the references to them should've changed in this test too.editrun_scripts/test_monoflux_limiter_GPU.pysrc/G_unit_test_types/pdf_parameter_tests.F90src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90src/G_unit_tests.F90src/G_unit_test_types/spurious_source_test.F90c15b1d3c005fdffa76902e976acdb5db5dbde0121773804486000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comADG1_w_closure consistency fix (#1282) * G_unit_test / ADG1_w_closure fix. A recent commit (bff619bdb2836f83ac658be8b8c258d41aaa6e14) introduced a change to ADG1_ADG2_responder_params that caused an inconsistency in the pdf calculations that the G_unit tests picked up on. This corrects it, but is also BIT_CHANGING, since it changes the calculation slightly when wp2 is exactly tolerance. * Adding test to ensure err_info is correctly set by adg1 routines when calling with bad inputs - also moving wp2 check to ADG1_w_closure because it makes more sense there 2026-03-17 22:28:06 -0500c15b1d3c005fdffa76902e976acdb5db5dbde012ADG1_w_closure consistency fix (#1282)editsrc/G_unit_test_types/pdf_parameter_tests.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90editsrc/G_unit_tests.F90src/CLUBB_core/matrix_solver_wrapper.F90jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfilerun_scripts/test_fatal_error_handling.pysrc/CLUBB_core/lapack_wrap.F90bdee6e6dbac76a996cdf73a88522c47affdd4d901773805495000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixing clubb_error_handling_gfortran_test (#1281) * Fixing error test by making the code check for NaNs in all solver cases - before it was only checking in Lapack. Also making a python version of the test and updating jenkins script to use it. * A little cleanup * Adding more comments and making a little data structure for the tests 2026-03-17 22:44:55 -0500bdee6e6dbac76a996cdf73a88522c47affdd4d90Fixing clubb_error_handling_gfortran_test (#1281)editjenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfileeditsrc/CLUBB_core/matrix_solver_wrapper.F90addrun_scripts/test_fatal_error_handling.pyeditsrc/CLUBB_core/lapack_wrap.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse512http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/512/510http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/510/Started by an SCM change5103ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f93ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9refs/remotes/origin/master3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f93ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9refs/remotes/origin/master3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f93ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#510226884107644clubb_BFB_r8029_flags_gfortran_test #510510false5102120SUCCESS1773736029031http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/510/run_scripts/run_scm.pysrc/clubb_driver.F902108b26241ca7695b3358c5f905385e79189cdc21773679567000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduForgot to add the changes to make concurrency safe - which caused random failures when using the new parallel run_scm_all.py with options like -out_dir or -ngrdcol 2026-03-16 11:46:07 -05002108b26241ca7695b3358c5f905385e79189cdc2Forgot to add the changes to make concurrency safe - which caused random failures when using the new parallel run_scm_all.py with options like -out_dir or -ngrdcoleditrun_scripts/run_scm.pyeditsrc/clubb_driver.F90cmake/toolchains/linux_x86_64_gfortran.cmakecmake/toolchains/linux_x86_64_nvfortran.cmakecmake/toolchains/linux_x86_64_gcc.cmakecmake/toolchains/linux_x86_64_ifx.cmakecmake/toolchains/linux_x86_64_nvhpc.cmakecmake/toolchains/linux_x86_64_intel.cmakecompile.pycmake/toolchains/linux_x86_64_cce.cmake6b49cb739e4c6970da64b808e791b85a227b44b31773718458000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comSlightly more general compile setup (#1277) * Making compiler lookup a little more general, this allows us to compile on Derecho too. Now it uses LMOD_FAMILY_COMPILER by default, then tries FC as a backup, and has a map of names so that things like intel/intel-oneapi map to the same things. Also adding a toolchain for the cray compiler (cce). * Removing old toolchains 2026-03-16 22:34:18 -05006b49cb739e4c6970da64b808e791b85a227b44b3Slightly more general compile setup (#1277)deletecmake/toolchains/linux_x86_64_gfortran.cmakedeletecmake/toolchains/linux_x86_64_nvfortran.cmakedeletecmake/toolchains/linux_x86_64_ifx.cmakeeditcompile.pyaddcmake/toolchains/linux_x86_64_nvhpc.cmakeaddcmake/toolchains/linux_x86_64_gcc.cmakeaddcmake/toolchains/linux_x86_64_intel.cmakeaddcmake/toolchains/linux_x86_64_cce.cmakecmake/deps/GPTLDependency.cmake3ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f91773718471000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGPTL cmake update (#1279) * Making compiling with gptl more robust. Before it could only compile when we used openmp too, but that's been worked around, and now it can compile on nvhpc too thanks to the static and disabled-shared flags that were added. Also works with gcc now. * Adding comment * Small cleanup and a better comment 2026-03-16 22:34:31 -05003ebd14c5ba84fb2caf021b7f96b1d5b7ddba93f9GPTL cmake update (#1279)editcmake/deps/GPTLDependency.cmakegithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse511http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/511/509http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/509/Started by an SCM change509bff619bdb2836f83ac658be8b8c258d41aaa6e14bff619bdb2836f83ac658be8b8c258d41aaa6e14refs/remotes/origin/masterbff619bdb2836f83ac658be8b8c258d41aaa6e14bff619bdb2836f83ac658be8b8c258d41aaa6e14refs/remotes/origin/masterbff619bdb2836f83ac658be8b8c258d41aaa6e14bff619bdb2836f83ac658be8b8c258d41aaa6e14refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5091390318107644clubb_BFB_r8029_flags_gfortran_test #509509false5091960SUCCESS1773649628126http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/509/jenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfilesrc/CLUBB_core/pdf_closure_module.F90src/G_unit_test_types/pdf_parameter_tests.F90src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90run_scripts/run_scm_all.pyjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfilejenkins_tests/clubb_driver_test/Jenkinsfilebff619bdb2836f83ac658be8b8c258d41aaa6e141773630552000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comStability fix (#1276) * Adding multiprocesses to run_scm_all.py, making the GPU jenkins tests only use 1 thread though, otherwise the different processes will fight for GPU usage * Making the if statement in ADG1_ADG2_responder_params use a strict inequality - this was causing numerical issues when fields were close to tolerance. This will be slightly BIT_CHANGING for most cases. * Adding comments to run_scm_all.py and removing the if-case in ADG1_ADG2_responder_params in favor of an explicit error check * Changing nprocs to nproc and updating jenkins tests 2026-03-15 22:09:12 -0500bff619bdb2836f83ac658be8b8c258d41aaa6e14Stability fix (#1276)editsrc/CLUBB_core/pdf_closure_module.F90editjenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfileeditsrc/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90editjenkins_tests/clubb_driver_test/Jenkinsfileeditrun_scripts/run_scm_all.pyeditjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileeditsrc/G_unit_test_types/pdf_parameter_tests.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse510http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/510/508http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/508/Started by an SCM change50802e8b46e176338e0beae7ab6fe3bb4ab2c11a7f202e8b46e176338e0beae7ab6fe3bb4ab2c11a7f2refs/remotes/origin/master02e8b46e176338e0beae7ab6fe3bb4ab2c11a7f202e8b46e176338e0beae7ab6fe3bb4ab2c11a7f2refs/remotes/origin/master02e8b46e176338e0beae7ab6fe3bb4ab2c11a7f202e8b46e176338e0beae7ab6fe3bb4ab2c11a7f2refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5082186294107644clubb_BFB_r8029_flags_gfortran_test #508508false5081869SUCCESS1773476826877http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/508/src/CLUBB_core/calendar.F90e589c52f0d3f735c8a1f4206fce09e7e4b0f75781773445654000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduAdded blank line 2026-03-13 18:47:34 -0500e589c52f0d3f735c8a1f4206fce09e7e4b0f7578Added blank lineeditsrc/CLUBB_core/calendar.F90src/CLUBB_core/LY93_pdf.F90a1dd370ac9a7d03023289b7025c7e30eca0184d11773453517000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove Id tag from LY93_pdf.F90 in order to trigger git update scripts larson-group/sys_admin#848 2026-03-13 20:58:37 -0500a1dd370ac9a7d03023289b7025c7e30eca0184d1Remove Id tag from LY93_pdf.F90 in order to trigger git update scriptseditsrc/CLUBB_core/LY93_pdf.F90src/SILHS/est_kessler_microphys_module.F9002e8b46e176338e0beae7ab6fe3bb4ab2c11a7f21773453655000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRemove unnecessary comments from est_kessler_microphys_module in order to trigger git update scripts. larson-group/sys_admin#848 2026-03-13 21:00:55 -050002e8b46e176338e0beae7ab6fe3bb4ab2c11a7f2Remove unnecessary comments from est_kessler_microphys_moduleeditsrc/SILHS/est_kessler_microphys_module.F90githttp://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse509http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/509/507http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/507/Started by an SCM change5079c1d5ca661f3fc39810d025db84985e8a5bd0c0e9c1d5ca661f3fc39810d025db84985e8a5bd0c0erefs/remotes/origin/master9c1d5ca661f3fc39810d025db84985e8a5bd0c0e9c1d5ca661f3fc39810d025db84985e8a5bd0c0erefs/remotes/origin/master9c1d5ca661f3fc39810d025db84985e8a5bd0c0e9c1d5ca661f3fc39810d025db84985e8a5bd0c0erefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#507301981107644clubb_BFB_r8029_flags_gfortran_test #507507false5071785SUCCESS1773390427021http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/507/src/CLUBB_core/CMakeLists.txt9c1d5ca661f3fc39810d025db84985e8a5bd0c0e1773317100000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line in order to trigger git updates (issue #848) 2026-03-12 07:05:00 -05009c1d5ca661f3fc39810d025db84985e8a5bd0c0eAdd blank line in order to trigger git updates (issue #848)editsrc/CLUBB_core/CMakeLists.txtgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse508http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/508/506http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/506/Started by an SCM change506983e04d547b71018dee5ec635ceb7e166b7ce8f8983e04d547b71018dee5ec635ceb7e166b7ce8f8refs/remotes/origin/master983e04d547b71018dee5ec635ceb7e166b7ce8f8983e04d547b71018dee5ec635ceb7e166b7ce8f8refs/remotes/origin/master983e04d547b71018dee5ec635ceb7e166b7ce8f8983e04d547b71018dee5ec635ceb7e166b7ce8f8refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#506463714107644clubb_BFB_r8029_flags_gfortran_test #506506false5061708SUCCESS1773217627943http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/506/input/tunable_parameters/configurable_model_flags.insrc/CLUBB_core/model_flags.F90983e04d547b71018dee5ec635ceb7e166b7ce8f81773197406000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comNew solvers by default (#1275) - BIT_CHANGING * Setting our solvers to use the new LU solvers by default instead of Lapack. 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#505505false5051610SUCCESS1772530027521http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/505/src/Microphys/Morrison_microphys/README.MICRO_M2005967e4c00c3609874bf0c9eecbd93781724252ce91772483936000http://carson.math.uwm.edu/jenkins/user/rootrootlarsongroupgithub@gmail.comForce-sync README to match SAM 2026-03-02 14:38:56 -0600967e4c00c3609874bf0c9eecbd93781724252ce9Force-sync README to match SAMeditsrc/Microphys/Morrison_microphys/README.MICRO_M2005src/CLUBB_core/CMakeLists.txt6340e0a542105e3612b9709f3192cdf3b88a55ec1772502018000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line to test python scripts Testing python scripts from crontab 2026-03-02 19:40:18 -06006340e0a542105e3612b9709f3192cdf3b88a55ecAdd blank line to test python scriptseditsrc/CLUBB_core/CMakeLists.txtChanges_M20058cb40c6a054a81383415a640c91d5effcc187d281772502096000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdded blank line to test python update scripts Testing python update scripts from crontab 2026-03-02 19:41:36 -06008cb40c6a054a81383415a640c91d5effcc187d28Added blank line to test python update scriptseditChanges_M2005githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/rootrootfalse506http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/506/504http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/504/Started by an SCM change5041d2996e43e6b32cb4cbc77931302a225c442888e1d2996e43e6b32cb4cbc77931302a225c442888erefs/remotes/origin/master1d2996e43e6b32cb4cbc77931302a225c442888e1d2996e43e6b32cb4cbc77931302a225c442888erefs/remotes/origin/master1d2996e43e6b32cb4cbc77931302a225c442888e1d2996e43e6b32cb4cbc77931302a225c442888erefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5041709925107644clubb_BFB_r8029_flags_gfortran_test 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-0600d803a85c7b95b15d1a2236266152af312c1826c0Fixed space to match Clubb spacingeditREADME.MICRO_M2005src/Microphys/Morrison_microphys/README.MICRO_M20053031280ec54f8f86ac2603f8948447348f98a4571771888823000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduReverting accidental changes 2026-02-23 17:20:23 -06003031280ec54f8f86ac2603f8948447348f98a457Reverting accidental changeseditsrc/Microphys/Morrison_microphys/README.MICRO_M2005run_scripts/run_tuner.pyrun_scripts/run_silhs_test.pyinput_misc/tuner/error_atex.ininput_misc/tuner/error_rico.ininput_misc/tuner/error_gabls3_night.ininput_misc/tuner/error_nov11_altocu.ininput_misc/tuner/error_four_cases.ininput_misc/tuner/error_dycoms2_rf01.ininput_misc/tuner/error_dycoms2_rf02_ds.ininput_misc/tuner/error_wangara.inpostprocessing/pyplotgen/config/Case_definitions.pyinput_misc/tuner/error_dycoms2_rf02_do.ininput/case_setups/READMEinput_misc/tuner/error_dycoms2_rf02_nd.ininput_misc/tuner/error_arm.ininput_misc/tuner/error_bomex.inpostprocessing/check_budgets_balance/checkBudget.pysrc/Input_fields/input_fields.F90input_misc/tuner/error_bomex_fire.inrun_scripts/run_restart_test.pyrun_scripts/run_scm.bashpostprocessing/check_budgets_balance/futurizedReadBinaryData.pyrun_scripts/run_scm.pyrun_scripts/run_bindiff_all.pyinput_misc/tuner/error_all.ininput_misc/tuner/error_arm_97.ininput_misc/tuner/error_lba.inpostprocessing/pyplotgen/src/DataReader.pypostprocessing/check_budgets_balance/readBinaryData.pypostprocessing/pyplotgen/README.mdpostprocessing/pyplotgen/pyplotgen.pyinput_misc/tuner/error_fire.inrun_scripts/run_clubb_conv_test.pysrc/error.F90input_misc/tuner/error_gabls2.ininput_misc/tuner/error_ticket_756.inpostprocessing/pyplotgen/src/VariableGroup.py52de37f932acbfdda066610e31a8eacff0e4eb721771904124000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comLegacy stats removal (#1273) * First commit in removing legacy stats * Removing accidentally added plots * Updates to fix and improve various things. Removing grads handling from lots of test scripts * Reverting old scripts to leave untouched * More reversions * More reversions * Simplifications * More reversions * Simplifications * Simplifications * Simplification * Simplification * Simplification * Simplification * Small pyplotgen improvement * Reverting case defs to use old scripts, removing need to unify old ones 2026-02-23 21:35:24 -060052de37f932acbfdda066610e31a8eacff0e4eb72Legacy stats removal (#1273)editrun_scripts/run_bindiff_all.pyeditinput_misc/tuner/error_dycoms2_rf02_do.ineditinput_misc/tuner/error_bomex.ineditinput_misc/tuner/error_dycoms2_rf01.indeletepostprocessing/check_budgets_balance/futurizedReadBinaryData.pyeditrun_scripts/run_restart_test.pyeditinput_misc/tuner/error_fire.ineditinput_misc/tuner/error_lba.ineditinput_misc/tuner/error_wangara.ineditpostprocessing/pyplotgen/config/Case_definitions.pyeditpostprocessing/pyplotgen/src/DataReader.pyeditinput_misc/tuner/error_gabls2.ineditpostprocessing/pyplotgen/README.mdeditsrc/Input_fields/input_fields.F90editinput/case_setups/READMEeditinput_misc/tuner/error_atex.ineditrun_scripts/run_clubb_conv_test.pydeletepostprocessing/check_budgets_balance/readBinaryData.pyeditinput_misc/tuner/error_dycoms2_rf02_nd.ineditpostprocessing/pyplotgen/pyplotgen.pyeditrun_scripts/run_silhs_test.pyeditinput_misc/tuner/error_arm.ineditsrc/error.F90editpostprocessing/check_budgets_balance/checkBudget.pyeditinput_misc/tuner/error_ticket_756.ineditinput_misc/tuner/error_four_cases.ineditinput_misc/tuner/error_all.ineditinput_misc/tuner/error_bomex_fire.ineditrun_scripts/run_scm.pyeditinput_misc/tuner/error_nov11_altocu.ineditinput_misc/tuner/error_arm_97.ineditinput_misc/tuner/error_dycoms2_rf02_ds.ineditinput_misc/tuner/error_gabls3_night.ineditrun_scripts/run_scm.basheditinput_misc/tuner/error_rico.ineditrun_scripts/run_tuner.pyeditpostprocessing/pyplotgen/src/VariableGroup.pypostprocessing/pyplotgen/config/Case_definitions.py1d2996e43e6b32cb4cbc77931302a225c442888e1771918969000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMissed some wrf changes 2026-02-24 01:42:49 -06001d2996e43e6b32cb4cbc77931302a225c442888eMissed some wrf changeseditpostprocessing/pyplotgen/config/Case_definitions.pygithttp://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse505http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/505/503http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/503/Started by user Gunther HueblerhueblerGunther Huebler503b622e32ad405141f1bb36bd9ef41b5e066c95061b622e32ad405141f1bb36bd9ef41b5e066c95061refs/remotes/origin/masterb622e32ad405141f1bb36bd9ef41b5e066c95061b622e32ad405141f1bb36bd9ef41b5e066c95061refs/remotes/origin/masterb622e32ad405141f1bb36bd9ef41b5e066c95061b622e32ad405141f1bb36bd9ef41b5e066c95061refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#503292672107644clubb_BFB_r8029_flags_gfortran_test 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kins_tests/clubb_fire_tuning_gfortran_test/Jenkinsfileinput/stats/nightly_stats_scalars.insrc/Benchmark_cases/CMakeLists.txtjenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfilesrc/Input_fields/input_netcdf.F90src/CLUBB_core/stats_clubb_utilities.F90src/Microphys/microphys_interface.incinput/stats/host_budgets_stats.indash_app/tab_run.pysrc/CLUBB_core/mono_flux_limiter.F90dash_app/assets/11_tab_run_theme.csssrc/CLUBB_core/advance_helper_module.F90src/CLUBB_core/stats_lh_sfc_module.F90dash_app/tab_multicol.pyjenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfilejenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfiledash_app/assets/10_theme.csssrc/Microphys/mixed_moment_PDF_integrals.F90src/input_interpret.F90src/Input_fields/input_fields.F90src/clubb_thread_test.F90run_scripts/run_restart_test.pysrc/soil_vegetation.F90run_scripts/run_scm.pysrc/CLUBB_core/stats_sfc_module.F90run_scripts/run_bindiff_all.pysrc/sounding.F90run_scripts/run_thread_test.pysrc/Microphys/silhs_category_variance_module.F90jenkins_tests/clubb_nvhpc_gpu_multi_col_avg_test/Jenkinsfilerun_scripts/test_monoflux_limiter_GPU.pysrc/CLUBB_core/stats_zt_module.F90src/CMakeLists.txtsrc/error.F903d4d74a0d0295936253484c54693f9eac230f6041771386880000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comNew stats system (#1270) * Initial commit for the new stats system * Adding helper scripts * Fixes and another script * Updates * Improvements * Fixed bug in all_stats.in * Updates * Adding dash app * Updates, also including new dash app since I'm finding it quite useful * Improvements/fixes and adding missing variable to all_stats.in * Updates * Moving wp2sclrp, wpsclrp2, wpsclrprtp, and wpsclrpthlp to the zt netcdf output file, since those are zt variables. Also adding a missing variable, rcm_in_cloud, to all_stats.in and correcting a missing comma bug. This is technically BIT_CHANGING because the variables are moving files, but the stored data is identical from 1:nzt - the nzm level just had garbage for those variables and is now gone. * Updates * Updates * The big stats pull, only new stats remains now * Some cleanup * Lot's of core rework, new index caching system speeds things up * Missed files * Small improvements a bug fix to the grid remapped output * Fixing up logic and ordering things a bit better * Little improvements * Cleanup and simplications to new stats core * Little improvements, mostly to dash app * Mostly cleanup * Making GPU code work * Making more scripts work * Fixing line lengths * Bug fixes * Bug fixes * Bug fixes * Bug fixes * Bug fixes and script updates * Jenkins script update * Jenkins script update * Jenkins script update * Jenkins script update * Jenkins script update * Jenkins script update * Script update * Script update * Script update * Script update * Script update * Script update * Script update * Test update * Jenkins script update * Test update * Fixing bug * Fixing bug * Fixing up comments * Small fixes * Jenkins script update * CMake update * Little fix for cmake * Jenkins script update * Jenkins script updateS * Cmake update * Jenkins script update * Jenkins script update * Jenkins script updates * Adding new stats input * Small fixes * Fixing old compile scripts * Jenkins script updates * Jenkins script updates * Jenkins script updates * Little fixes * Little cmake fix * Little jenkins fix * Mono flux test update and _api renamings * Small Jenkins fix * Adding missing comments back * Even more comments * stats updates * Even more comments * Various small improvements * Removing test statsd * Adding some things back to _api and adding structure explaining comment in stats files. * Many more comments * Removing plan file * Spelling fix 2026-02-17 21:54:40 -06003d4d74a0d0295936253484c54693f9eac230f604New stats system (#1270)editsrc/CLUBB_core/advance_helper_module.F90editcompile/file_list/clubb_model_filesdeletesrc/stat_file_utils.F90editinput/stats/tuning_stats.ineditsrc/clubb_driver.F90editsrc/Benchmark_cases/CMakeLists.txteditsrc/Microphys/silhs_category_variance_module.F90editsrc/G_unit_test_types/spurious_source_test.F90editrun_scripts/create_multi_col_params.pyadddash_app/assets/10_theme.csseditinput/stats/scalars_stats.ineditjenkins_tests/clubb_ifort_build/Jenkinsfiledeletesrc/hydrostatic_module.F90editsrc/SILHS/silhs_api_module.F90editsrc/CLUBB_core/CMakeLists.txtaddrun_scripts/fire_tuner.pyeditsrc/CLUBB_core/advance_xp2_xpyp_module.F90editjenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfileeditjenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfileeditsrc/CLUBB_core/clip_explicit.F90editsrc/SILHS/latin_hypercube_driver_module.F90editrun_scripts/run_bindiff_all.basheditsrc/CLUBB_core/clubb_api_module.F90addsrc/Input_fields/hydrostatic_module.F90editsrc/Microphys/morrison_microphys_module.F90addsrc/Input_fields/input_names.F90deletesrc/CLUBB_core/stats_rad_zm_module.F90editsrc/Microphys/KK_microphys_module.F90deletesrc/CLUBB_core/recl.inceditjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfileeditsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editjenkins_tests/clubb_gfortran_build/Jenkinsfileeditsrc/CLUBB_core/matrix_solver_wrapper.F90editjenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfileeditjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/JenkinsfileeditREADMEeditinput/stats/all_stats.inadddash_app/assets/20_autoscroll.jseditinput/stats/standard_stats.ineditsrc/error.F90editsrc/CLUBB_core/stats_clubb_utilities.F90addsrc/Input_fields/corr_varnce_input_reader.F90adddash_app/assets/30_run_ui_resize.jseditsrc/Radiation/BUGSrad/variables_radiation_module.F90editjenkins_tests/clubb_nvhpc_debug_build/Jenkinsfiledeletesrc/CLUBB_core/input_reader.F90editsrc/Microphys/Microphys_utils/microphys_stats_vars_module.F90deletesrc/CLUBB_core/stats_lh_zt_module.F90editsrc/clubb_driver_test.F90editsrc/Microphys/microphys_driver.F90editsrc/clubb_standalone.F90editsrc/Microphys/KK_microphys/KK_upscaled_turbulent_sed.F90editsrc/Microphys/KK_microphys/KK_upscaled_covariances.F90deletesrc/Benchmark_cases/cloud_sed_module.F90editsrc/Microphys/mixed_moment_PDF_integrals.F90addutilities/split_stats_to_legacy.pyeditsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/advance_xp3_module.F90editsrc/Microphys/microphys_init_cleanup.F90addinput/stats/fire_stats.ineditpostprocessing/check_budgets_balance/checkBudget.pyeditsrc/CLUBB_core/pdf_closure_module.F90editsrc/Radiation/simple_rad_module.F90deletejenkins_tests/clubb_nvhpc_gpu_multi_col_avg_test/Jenkinsfileaddrun_scripts/run_restart_test.pyadddash_app/tab_compare.pydeletesrc/CLUBB_core/input_names.F90editsrc/CLUBB_core/numerical_check.F90editsrc/G_unit_test_types/CMakeLists.txteditjenkins_tests/clubb_plot_ifort_debug/Jenkinsfileaddrun_scripts/check_budget_balance.pyeditrun_scripts/run_scm.pyeditsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/Benchmark_cases/prescribe_forcings.F90deletesrc/input_interpret.F90deletesrc/CLUBB_core/stats_type.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editjenkins_tests/clubb_openmp_gfortran_test/Jenkinsfileaddsrc/Input_fields/CMakeLists.txtaddsrc/Input_fields/extrapolation.F90deletesrc/sounding.F90editsrc/clubb_thread_test.F90editjenkins_tests/clubb_nvhpc_single_prec_build/Jenkinsfiledeletesrc/CLUBB_core/stats_type_utilities.F90deletesrc/input_fields.F90editsrc/generalized_grid_test.F90editsrc/int2txt.F90deleterun_scripts/run_restart_test.basheditsrc/Microphys/Morrison_microphys/README.MICRO_M2005adddash_app/tab_multicol.pyeditjenkins_tests/clubb_gfortran_debug_run/Jenkinsfileeditinput/stats/nobudgets_nomicro_stats.ineditsrc/CLUBB_core/corr_varnce_module.F90deletesrc/CLUBB_core/stats_sfc_module.F90editsrc/CLUBB_core/fill_holes.F90editinput/stats/nobudgets_stats.ineditjenkins_tests/clubb_restart_silhs_gfortran_test/Jenkinsfileeditsrc/CLUBB_core/advance_windm_edsclrm_module.F90deletesrc/CLUBB_core/stat_file_module.F90addsrc/Microphys/cloud_sed_module.F90editjenkins_tests/clubb_fire_tuning_gfortran_test/Jenkinsfileeditjenkins_tests/clubb_restart_gfortran_test/Jenkinsfileeditsrc/Microphys/estimate_scm_microphys_module.F90editjenkins_tests/clubb_release_intel_build/Jenkinsfileeditrun_scripts/run_bindiff_all.pydeletesrc/CLUBB_core/stats_zt_module.F90addsrc/Input_fields/sounding.F90addsrc/Input_fields/stat_file_module.F90editsrc/CLUBB_core/precipitation_fraction.F90editsrc/CLUBB_core/remapping_module.F90addsrc/Input_fields/input_reader.F90editrun_scripts/check_mirrored_multi_col_output.pyeditsrc/CLUBB_core/mixing_length.F90deleterun_scripts/check_multi_col_avg.pyeditsrc/Microphys/advance_microphys_module.F90editjenkins_tests/clubb_mac_gfortran_test/Jenkinsfileadddash_app/case_definitions.pyaddsrc/Input_fields/input_fields.F90addsrc/Input_fields/recl.inceditjenkins_tests/clubb_silhs_convergence_gfortran/Jenkinsfileeditrun_scripts/run_thr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Hueblerhuebler@uwm.eduFixing fire tuner 2026-02-17 22:23:17 -0600b622e32ad405141f1bb36bd9ef41b5e066c95061Fixing fire tunereditsrc/CLUBB_core/stats_netcdf.F90editrun_scripts/fire_tuner.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse504http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/504/502http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/502/Started by an SCM change50240c5d0b7724ed353d1cca476ade7b6f8569e263c40c5d0b7724ed353d1cca476ade7b6f8569e263crefs/remotes/origin/master40c5d0b7724ed353d1cca476ade7b6f8569e263c40c5d0b7724ed353d1cca476ade7b6f8569e263crefs/remotes/origin/master40c5d0b7724ed353d1cca476ade7b6f8569e263c40c5d0b7724ed353d1cca476ade7b6f8569e263crefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5021553453107644clubb_BFB_r8029_flags_gfortran_test #502502false502802SUCCESS1770888428240http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/502/src/CLUBB_core/CMakeLists.txt92dfde364177231829c86e739a48ac23bef836961770849785000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduRemoved blank line to test python update scripts 2026-02-11 16:43:05 -060092dfde364177231829c86e739a48ac23bef83696Removed blank line to test python update scriptseditsrc/CLUBB_core/CMakeLists.txtREADME.MICRO_M20055a252b6bad0b47ba5418cb6475a2ee5ab104328d1770858267000http://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockhancoct@uwm.eduFixed double space to test updateClubbMorrison.py python script 2026-02-11 19:04:27 -06005a252b6bad0b47ba5418cb6475a2ee5ab104328dFixed double space to test updateClubbMorrison.py python scripteditREADME.MICRO_M2005githttp://carson.math.uwm.edu/jenkins/user/hancockTrevor Hancockfalse503http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/503/501http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/501/Started by an SCM change501ff3d91fcabb2248cc86aabf4b585f489281db237ff3d91fcabb2248cc86aabf4b585f489281db237refs/remotes/origin/masterff3d91fcabb2248cc86aabf4b585f489281db237ff3d91fcabb2248cc86aabf4b585f489281db237refs/remotes/origin/masterff3d91fcabb2248cc86aabf4b585f489281db237ff3d91fcabb2248cc86aabf4b585f489281db237refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5011801227107644clubb_BFB_r8029_flags_gfortran_test #501501false501711SUCCESS1770715629509http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/501/src/CLUBB_core/CMakeLists.txtff3d91fcabb2248cc86aabf4b585f489281db2371770687739000http://carson.math.uwm.edu/jenkins/user/pickettCole Pickettlarsongroupgithub@gmail.comAdded empty line to test update scripts 2026-02-09 19:42:19 -0600ff3d91fcabb2248cc86aabf4b585f489281db237Added empty line to test update scriptseditsrc/CLUBB_core/CMakeLists.txtgithttp://carson.math.uwm.edu/jenkins/user/pickettCole Pickettfalse502http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/502/500http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/500/Started by an SCM change500678d409e86486e7b6b7f241893c3d325e2310a55678d409e86486e7b6b7f241893c3d325e2310a55refs/remotes/origin/master678d409e86486e7b6b7f241893c3d325e2310a55678d409e86486e7b6b7f241893c3d325e2310a55refs/remotes/origin/master678d409e86486e7b6b7f241893c3d325e2310a55678d409e86486e7b6b7f241893c3d325e2310a55refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#5001582019107644clubb_BFB_r8029_flags_gfortran_test #500500false500614SUCCESS1770370026525http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/500/src/CLUBB_core/stats_zt_module.F90input/stats/scalars_stats.insrc/CLUBB_core/stats_clubb_utilities.F90input/stats/all_stats.insrc/CLUBB_core/stats_zm_module.F90678d409e86486e7b6b7f241893c3d325e2310a551770322192000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMoving wp2sclrp, wpsclrp2, wpsclrprtp, and wpsclrpthlp to the zt netcdf output file, since those are zt variables. Also adding a missing variable, rcm_in_cloud, to all_stats.in and correcting a missing comma bug. This is technically BIT_CHANGING because the variables are moving files, but the stored data is identical from 1:nzt - the nzm level just had garbage for those variables and is now gone. (#1271) 2026-02-05 14:09:52 -0600678d409e86486e7b6b7f241893c3d325e2310a55Moving wp2sclrp, wpsclrp2, wpsclrprtp, and wpsclrpthlp to the zt netcdf output file, since those are zt variables. Also adding a missing variable, rcm_in_cloud, to all_stats.in and correcting a missing comma bug. This is technically BIT_CHANGING because the variables are moving files, but the stored data is identical from 1:nzt - the nzm level just had garbage for those variables and is now gone. (#1271)editinput/stats/all_stats.ineditinput/stats/scalars_stats.ineditsrc/CLUBB_core/stats_zt_module.F90editsrc/CLUBB_core/stats_zm_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse501http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/501/499http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/499/Started by an SCM change499f1b6cfe91fd5c120333991b2386dd7e7845ae2e3f1b6cfe91fd5c120333991b2386dd7e7845ae2e3refs/remotes/origin/masterf1b6cfe91fd5c120333991b2386dd7e7845ae2e3f1b6cfe91fd5c120333991b2386dd7e7845ae2e3refs/remotes/origin/masterf1b6cfe91fd5c120333991b2386dd7e7845ae2e3f1b6cfe91fd5c120333991b2386dd7e7845ae2e3refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#499619808107644clubb_BFB_r8029_flags_gfortran_test #499499false499521SUCCESS1768037228188http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/499/input/case_setups/cgils_s6_model.insrc/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp2_xpyp_module.F908033a1492b3b2ce6c8d314942d2fba00669188c31767951630000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduGPU fixed and cgils_s6 fix 2026-01-09 03:40:30 -06008033a1492b3b2ce6c8d314942d2fba00669188c3GPU fixed and cgils_s6 fixeditsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editinput/case_setups/cgils_s6_model.insrc/clubb_driver.F901c7c6ce6eaba598c7e10dc276e152a825a0642ac1767953771000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding deallocation for fcor_y 2026-01-09 04:16:11 -06001c7c6ce6eaba598c7e10dc276e152a825a0642acAdding deallocation for fcor_yeditsrc/clubb_driver.F90src/clubb_driver.F90d93dd4e58f75626f8b70b6e631d463aed4ed53fa1767954031000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore small bug fixes 2026-01-09 04:20:31 -0600d93dd4e58f75626f8b70b6e631d463aed4ed53faMore small bug fixeseditsrc/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/pdf_closure_module.F90src/clubb_driver.F90ba709f78476c6e1868009855327c1d42cbb904101767981713000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore small bug fixes 2026-01-09 12:01:53 -0600ba709f78476c6e1868009855327c1d42cbb90410More small bug fixeseditsrc/CLUBB_core/clubb_api_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/clubb_driver.F90src/clubb_driver.F90ba5dd963b14b0238fc5e8b358390af68a66aa3a01767985840000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAnother small gpu bug fix 2026-01-09 13:10:40 -0600ba5dd963b14b0238fc5e8b358390af68a66aa3a0Another small gpu bug fixeditsrc/clubb_driver.F90src/CLUBB_core/clubb_api_module.F90f1b6cfe91fd5c120333991b2386dd7e7845ae2e31767993114000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving extra acc end statement 2026-01-09 15:11:54 -0600f1b6cfe91fd5c120333991b2386dd7e7845ae2e3Removing extra acc end statementeditsrc/CLUBB_core/clubb_api_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse500http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/500/498http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/498/Started by an SCM change4984902a5ccf6c0da1bf588ea853aaadbc9a776dfa24902a5ccf6c0da1bf588ea853aaadbc9a776dfa2refs/remotes/origin/master4902a5ccf6c0da1bf588ea853aaadbc9a776dfa24902a5ccf6c0da1bf588ea853aaadbc9a776dfa2refs/remotes/origin/master4902a5ccf6c0da1bf588ea853aaadbc9a776dfa24902a5ccf6c0da1bf588ea853aaadbc9a776dfa2refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#498383905107644clubb_BFB_r8029_flags_gfortran_test #498498false498358SUCCESS1767950827216http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/498/input/case_setups/atex_long_edsclr_sounding.insrc/CLUBB_core/advance_wp2_wp3_module.F90input/stats/standard_stats.ininput/case_setups/coriolis_test_edsclr_sounding.insrc/CLUBB_core/pdf_closure_module.F90input/case_setups/atex_long_sfc.ininput/tunable_parameters_coriolis_cases/ekman_parameters.ininput/tunable_parameters_coriolis_cases/atex_long_parameters.insrc/clubb_tuner.F90input/case_setups/coriolis_test_sfc.insrc/CLUBB_core/output_netcdf.F90src/CLUBB_core/model_flags.F90input/case_setups/cgils_s6_model.ininput/case_setups/coriolis_test_sounding.insrc/G_unit_test_types/pdf_parameter_tests.F90input/case_setups/ekman_sfc.ininput/stats/scalars_stats.insrc/generalized_grid_test.F90input/case_setups/coriolis_test_sclr_sounding.ininput/case_setups/ekman_edsclr_sounding.ininput/stats/all_stats.insrc/Benchmark_cases/ekman.F90src/CLUBB_core/advance_xp2_xpyp_module.F90input/case_setups/ekman_sclr_sounding.insrc/CLUBB_core/advance_xm_wpxp_module.F90input/tunable_parameters_coriolis_cases/coriolis_test_parameters.ininput/case_setups/coriolis_test_model.insrc/CLUBB_core/clubb_api_module.F90input/stats/nobudgets_nomicro_stats.insrc/Benchmark_cases/prescribe_forcings.F90input/tunable_parameters/configurable_model_flags.insrc/Benchmark_cases/atex_long.F90src/CLUBB_core/stats_variables.F90src/CLUBB_core/grid_adaptation_module.F90run_scripts/run_bindiff_w_flags_config_core_flags.jsoninput/case_setups/ekman_model.insrc/Benchmark_cases/CMakeLists.txtpostprocessing/pyplotgen/config/Case_definitions.pyinput/stats/host_budgets_stats.insrc/CLUBB_core/stats_clubb_utilities.F90input/case_setups/atex_long_model.ininput/stats/nobudgets_stats.insrc/input_fields.F90src/G_unit_test_types/spurious_source_test.F90input/case_setups/atex_long_sounding.insrc/CLUBB_core/numerical_check.F90compile/file_list/clubb_model_filessrc/CLUBB_core/stats_zm_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/constants_clubb.F90src/clubb_driver.F90src/CLUBB_core/stats_zt_module.F90input/case_setups/ekman_sounding.ininput/stats/nightly_stats.ininput/case_setups/atex_long_sclr_sounding.in4902a5ccf6c0da1bf588ea853aaadbc9a776dfa21767903824000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comNon trad coriolis (#1267) * Updating the clubb core and silhs version files * Fixing bug. qclvar copying is handled by the api, but we were deleting it with an unstructured data statement. I added this due as a fix before thinking qclvar was a local variable, which happened because I mixed up the CLUBB_CAM and CLUBBND_CAM flags. https://github.com/larson-group/cam/issues/175 * Fixing GPU bug. There is a vertical dependency with wpxp. This is what was breaking the ECT test, see larson-group/cam#175 * Moving pdf_params copying to copyin. This is the data structure that contains pointers, and these pointers will be different on the host and device, so it is bad in theory to copy the structure back to the CPU as it might overwrite cpu memory pointers with gpu memory pointers. In practice though I've seen no problems caused by this, I'm just making this commit preemptively, and it has already been tested with the ECT test. * Moving PosInf to clubb_model_settings.F90 * Updating the clubb core and silhs version files * Add flags for the Coriolis terms. * Pass fcory from api module into advance module * Implement the traditional Coriolis terms * Implement the nontraditional Coriolis terms * Add stats variables for the Coriolis terms * Compute Coriolis parameters from namelist latitude * Create the coriolis_test case * Tune the coriolis_test case. However, oscillation frequency is too slow * Correct a coefficient in Coriolis. "coriolis_test" matches analytical * Update advance_clubb_core_module.F90 Rename fcory as fcor_y and add description * Update advance_wp2_wp3_module.F90 Rename fcory as fcor_y and add description * Update advance_xm_wpxp_module.F90 Rename fcory as fcor_y and add description * Update advance_xp2_xpyp_module.F90 Rename fcory as fcor_y and add description * Update clubb_api_module.F90 Rename fcory as fcor_y and add description * Update spurious_source_test.F90 Rename fcory as fcor_y and add description * Update clubb_driver.F90 Rename fcor as fcor_y and add description. Also, add description for the coriolis_test * Update generalized_grid_test.F90 Rename fcory as fcor_y and add description. * Update coriolis_test_model.in Add description for the Coriolis test case * Stablize the cgils_s6 case with smaller time step * Create the ekman case * Tune the ekman case to match LES * Compute wp2up with PDF and pass along with wp2thvp * Implement the nontraditional Coriolis term for wp3 * Fine-tune parameters for the ekman case * Create the atex_long case * Retune ekman case with l_vary_convect_depth = .true. * Fine-tune the atex_long case * Add atex_long case to pyplotgen * Fine-tune atex_long case with less radical changes * Updating the clubb core and silhs version files * Small bug fix in the wp2up flip and adding new files to the cmakelist * Renmaing, moving some files, and reverting change to cgils_s6 timestep * Adding new flags to flag test file * Updating comment for fcor_y calculation explanation * Removing accidentally added file --------- Co-authored-by: pickett <larsongroupgithub@gmail.com> Co-authored-by: Hing Ong <hing.ong@anl.gov> Co-authored-by: Hing Ong <36782452+HingOng@users.noreply.github.com> 2026-01-08 14:23:44 -06004902a5ccf6c0da1bf588ea853aaadbc9a776dfa2Non trad coriolis (#1267)editsrc/CLUBB_core/stats_variables.F90addinput/case_setups/coriolis_test_sfc.ineditpostprocessing/pyplotgen/config/Case_definitions.pyaddinput/case_setups/ekman_sfc.ineditsrc/CLUBB_core/numerical_check.F90editsrc/CLUBB_core/stats_zt_module.F90editcompile/file_list/clubb_model_filesaddinput/case_setups/ekman_edsclr_sounding.ineditsrc/CLUBB_core/constants_clubb.F90editsrc/CLUBB_core/model_flags.F90editinput/case_setups/cgils_s6_model.inaddinput/case_setups/coriolis_test_model.ineditsrc/G_unit_test_types/pdf_parameter_tests.F90editinput/stats/host_budgets_stats.ineditsrc/CLUBB_core/grid_adaptation_module.F90editsrc/Benchmark_cases/prescribe_forcings.F90addinput/case_setups/atex_long_edsclr_sounding.inaddinput/tunable_parameters_coriolis_cases/atex_long_parameters.inaddinput/case_setups/atex_long_sfc.ineditrun_scripts/run_bindiff_w_flags_config_core_flags.jsonaddinput/case_setups/coriolis_test_edsclr_sounding.ineditsrc/generalized_grid_test.F90editsrc/CLUBB_core/clubb_api_module.F90addinput/case_setups/atex_long_sclr_sounding.ineditsrc/CLUBB_core/advance_xp2_xpyp_module.F90addinput/tunable_parameters_coriolis_cases/ekman_parameters.inaddinput/case_setups/coriolis_test_sounding.inaddinput/tunable_parameters_coriolis_cases/coriolis_test_parameters.ineditsrc/CLUBB_core/stats_zm_module.F90editsrc/input_fields.F90editsrc/Benchmark_cases/CMakeLists.txteditinput/tunable_parameters/configurable_model_flags.inaddinput/case_setups/atex_long_sounding.inaddinput/case_setups/ekman_sclr_sounding.inaddinput/case_setups/atex_long_model.inaddsrc/Benchmark_cases/ekman.F90addinput/case_setups/ekman_sounding.inaddinput/case_setups/coriolis_test_sclr_sounding.ineditinput/stats/nobudgets_nomicro_stats.ineditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/output_netcdf.F90editinput/stats/nightly_stats.ineditsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editsrc/G_unit_test_types/spurious_source_test.F90editinput/stats/nobudgets_stats.inaddsrc/Benchmark_cases/atex_long.F90editsrc/CLUBB_core/advance_wp2_wp3_module.F90editinput/stats/scalars_stats.inaddinput/case_setups/ekman_model.ineditinput/stats/all_stats.ineditsrc/clubb_driver.F90editinput/stats/standard_stats.ineditsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/clubb_tuner.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse499http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/499/497http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/497/Started by an SCM change497418c202a9b0512fc8c4f421918cc978164db852d418c202a9b0512fc8c4f421918cc978164db852drefs/remotes/origin/master418c202a9b0512fc8c4f421918cc978164db852d418c202a9b0512fc8c4f421918cc978164db852drefs/remotes/origin/master418c202a9b0512fc8c4f421918cc978164db852d418c202a9b0512fc8c4f421918cc978164db852drefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#497275039107644clubb_BFB_r8029_flags_gfortran_test #497497false497251SUCCESS1766050027721http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/497/src/CLUBB_core/fill_holes.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/grid_class.F90run_scripts/run_bindiff_w_flags_config_core_flags.jsoninput/case_setups/arm_97_model.ininput/case_setups/arm_97_edsclr_sounding.in418c202a9b0512fc8c4f421918cc978164db852d1766005108000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixes for fill_holes and edsclr code (#1266) * Fixing bugs in new hole fillers that caused error when ran in descending mode, the issue was that dz is negative in descending mode, so we need abs() around it when calculating the normalized mass. Also fixing a related bug in the way edsclr code calls the hole filler - it was not using the generalized bounds. Also removing the ifdef in favor of normal ifs * Copying the rtm and thm values from arm_97_sounding.in to the edsclr_sounding file. This still allows arm_97 to catch the bugs we want it to. 2025-12-17 14:58:28 -0600418c202a9b0512fc8c4f421918cc978164db852dFixes for fill_holes and edsclr code (#1266)editinput/case_setups/arm_97_model.ineditinput/case_setups/arm_97_edsclr_sounding.ineditsrc/CLUBB_core/fill_holes.F90editrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/grid_class.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse498http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/498/496http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/496/Started by an SCM change4960959bb14d6f748501bee53902e484166d501923c0959bb14d6f748501bee53902e484166d501923crefs/remotes/origin/master0959bb14d6f748501bee53902e484166d501923c0959bb14d6f748501bee53902e484166d501923crefs/remotes/origin/master0959bb14d6f748501bee53902e484166d501923c0959bb14d6f748501bee53902e484166d501923crefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#496587743107644clubb_BFB_r8029_flags_gfortran_test #496496false496148SUCCESS1765445230080http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/496/jenkins_tests/clubb_rev_grid_matrix_solve_test/Jenkinsfilerun_scripts/run_clubb_w_varying_flags.pysrc/CLUBB_core/advance_wp2_wp3_module.F90src/generalized_grid_test.F90run_scripts/run_bindiff_w_flags_config_core_flags.jsonjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfilesrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/clubb_driver.F90src/CLUBB_core/model_flags.F90jenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfilesrc/CLUBB_core/mono_flux_limiter.F90run_scripts/run_scm_all.py0959bb14d6f748501bee53902e484166d501923c1765406071000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comGrid reverse matrix test (#1265) * Making new flag l_force_descending_solves that forces us to use descending solves. Having it true keeps results BFB between ascending and descending when using -O0. * renaming test * Moving flag * test fix * test fix * test fix * Removing iteration limit on script and adding test error * Removing test error, it was correctly caught * Adding max statement to aid in single precision runs and removing accidentally commited file. 2025-12-10 16:34:31 -06000959bb14d6f748501bee53902e484166d501923cGrid reverse matrix test (#1265)editsrc/clubb_driver.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditsrc/CLUBB_core/model_flags.F90editsrc/generalized_grid_test.F90editjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfileeditrun_scripts/run_scm_all.pyeditsrc/CLUBB_core/advance_wp2_wp3_module.F90editjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfileeditsrc/CLUBB_core/advance_windm_edsclrm_module.F90addjenkins_tests/clubb_rev_grid_matrix_solve_test/Jenkinsfileeditrun_scripts/run_clubb_w_varying_flags.pyeditsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/mono_flux_limiter.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse497http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/497/495http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/495/Started by an SCM change495988ea0f2cc24e424e0a204b65bfd59bd4e9eee5b988ea0f2cc24e424e0a204b65bfd59bd4e9eee5brefs/remotes/origin/master988ea0f2cc24e424e0a204b65bfd59bd4e9eee5b988ea0f2cc24e424e0a204b65bfd59bd4e9eee5brefs/remotes/origin/master988ea0f2cc24e424e0a204b65bfd59bd4e9eee5b988ea0f2cc24e424e0a204b65bfd59bd4e9eee5brefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#495192499107644clubb_BFB_r8029_flags_gfortran_test #495495false49547SUCCESS1765013231139http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/495/READMEa5597665ed8bdd21902000712f8ad2685276eec01764639088000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd blank line to README. 2025-12-01 19:31:28 -0600a5597665ed8bdd21902000712f8ad2685276eec0Add blank line to README.editREADMEsrc/CLUBB_core/penta_lu_solver.F90bba14c86a748da7993af72c056a9f6505cf43f1b1764747200000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING bug fix for the penta_lu solver, only BC when using penta_solve_method=2 (#1264) 2025-12-03 01:33:20 -0600bba14c86a748da7993af72c056a9f6505cf43f1bBIT_CHANGING bug fix for the penta_lu solver, only BC when using penta_solve_method=2 (#1264)editsrc/CLUBB_core/penta_lu_solver.F90src/CLUBB_core/advance_xm_wpxp_module.F90jenkins_tests/clubb_plot_solver_compare/Jenkinsfilesrc/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/matrix_solver_wrapper.F90src/CLUBB_core/penta_bicgstab_solver.F90src/CLUBB_core/CMakeLists.txt14f5e6e323b11dc9e5fff8ca5982c6ab7f92f8c11764884961000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBicgstab addition (#1261) * Adding 'initial' bicgstab solver * Currently working, lots of diagnostic code still present * Pruning everything unneccesary, adding lots of comments, making names good. * Adding jenkins test to plot results with different solvers * jenkins script update * jenkins script update * jenkins script update * jenkins script update * jenkins script update * jenkins script update * jenkins script update * Removing print statement * Improved naming and comments * Removing print statement * A couple more comments. 2025-12-04 15:49:21 -060014f5e6e323b11dc9e5fff8ca5982c6ab7f92f8c1Bicgstab addition (#1261)editsrc/CLUBB_core/advance_wp2_wp3_module.F90addsrc/CLUBB_core/penta_bicgstab_solver.F90editsrc/CLUBB_core/CMakeLists.txteditsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/matrix_solver_wrapper.F90addjenkins_tests/clubb_plot_solver_compare/Jenkinsfilesrc/CLUBB_core/penta_bicgstab_solver.F90988ea0f2cc24e424e0a204b65bfd59bd4e9eee5b1764902874000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall bug fix to make gfortran+debug happy, without the _core_rknd this could be a potential type error 2025-12-04 20:47:54 -0600988ea0f2cc24e424e0a204b65bfd59bd4e9eee5bSmall bug fix to make gfortran+debug happy, without the _core_rknd this could be a potential type erroreditsrc/CLUBB_core/penta_bicgstab_solver.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse496http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/496/494http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/494/Started by an SCM change494040e9961b5b422803a0aa816c5921be9576aa4a8040e9961b5b422803a0aa816c5921be9576aa4a8refs/remotes/origin/master040e9961b5b422803a0aa816c5921be9576aa4a8040e9961b5b422803a0aa816c5921be9576aa4a8refs/remotes/origin/master040e9961b5b422803a0aa816c5921be9576aa4a8040e9961b5b422803a0aa816c5921be9576aa4a8refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#4941192895107644clubb_BFB_r8029_flags_gfortran_test #494494false49412339SUCCESS1763976430592http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/494/src/CLUBB_core/advance_xp2_xpyp_module.F90d5703f0d199f44b4fb66df14b4ebfcdb14b57c191763924788000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMaking update_xp2_mc work with either grid mode (#1263) 2025-11-23 13:06:28 -0600d5703f0d199f44b4fb66df14b4ebfcdb14b57c19Making update_xp2_mc work with either grid mode (#1263)editsrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/fill_holes.F90src/CLUBB_core/clip_explicit.F90src/CLUBB_core/advance_wp2_wp3_module.F900da744a4b04f078044dcee08c614ad2a479167511763952429000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduImproving variable name 2025-11-23 20:47:09 -06000da744a4b04f078044dcee08c614ad2a47916751Improving variable nameeditsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/CLUBB_core/clip_explicit.F90editsrc/CLUBB_core/fill_holes.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/stats_clubb_utilities.F90040e9961b5b422803a0aa816c5921be9576aa4a81763952752000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSmall bug fix, but this is BIT_CHANGING because it affects stats output. Some zm fields (w_1_zm, w_2_zm, varnce_w_1_zm, varnce_w_2_zm, and mixt_frac_zm) were all nan in the netcdf output when l_call_pdf_closure_twice=.false., because those come from pdf_params_zm. 2025-11-23 20:52:32 -0600040e9961b5b422803a0aa816c5921be9576aa4a8Small bug fix, but this is BIT_CHANGING because it affects stats output. Some zm fields (w_1_zm, w_2_zm, varnce_w_1_zm, varnce_w_2_zm, and mixt_frac_zm) were all nan in the netcdf output when l_call_pdf_closure_twice=.false., because those come from pdf_params_zm.editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse495http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/495/493http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/493/Started by an SCM change49361aa970643913037e2766554210e4527bb5e817161aa970643913037e2766554210e4527bb5e8171refs/remotes/origin/master61aa970643913037e2766554210e4527bb5e817161aa970643913037e2766554210e4527bb5e8171refs/remotes/origin/master61aa970643913037e2766554210e4527bb5e817161aa970643913037e2766554210e4527bb5e8171refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#4931380342107644clubb_BFB_r8029_flags_gfortran_test #493493false49312232SUCCESS1763458027955http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/493/src/CLUBB_core/model_flags.modsrc/CLUBB_core/error_code.mod61aa970643913037e2766554210e4527bb5e81711763408615000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving accidentally added files 2025-11-17 13:43:35 -060061aa970643913037e2766554210e4527bb5e8171Removing accidentally added filesdeletesrc/CLUBB_core/model_flags.moddeletesrc/CLUBB_core/error_code.modgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse494http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/494/492http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/492/blueStarted by user Gunther HueblerhueblerGunther Huebler10fdf13cc3bb83ae86ffc8d99d1783085c54968ef0fdf13cc3bb83ae86ffc8d99d1783085c54968efrefs/remotes/origin/master0fdf13cc3bb83ae86ffc8d99d1783085c54968ef0fdf13cc3bb83ae86ffc8d99d1783085c54968efrefs/remotes/origin/master0fdf13cc3bb83ae86ffc8d99d1783085c54968ef0fdf13cc3bb83ae86ffc8d99d1783085c54968efrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#16793107644clubb_BFB_r8029_flags_gfortran_test #11false19635FAILURE1634250011373http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/1/false2http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/2/Build stability: 2 out of the last 5 builds failed.icon-health-40to59health-40to59.png60falseStarted by an SCM change000183224822370.99190809080592e92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#59283224107644clubb_BFB_r8029_flags_gfortran_test #592592false59210228SUCCESS1791448030655http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/592/tuner/loss_backend.pytuner/job_runtime.pytuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyjenkins_tests/clubb_tuner/Jenkinsfileclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pydash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyrun_scripts/README.mddash_app/pytests/test_jax_device.pydash_app/shared/activity.pyclubb_jax/run_jax.pydash_app/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pytuner/request.pydash_app/compile_tab/callbacks.pydash_app/shared/actions.pydash_app/shared/jax_device.pyutilities/create_case_namelist.pydash_app/profile_tab/runtime.pydash_app/tune_tab/runtime.pytuner/tune_clubb.pyclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pytuner/tuning_worker.pydash_app/run_tab/runtime.pytuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pytuner/status.pyclubb_jax/backends/cuda.pydash_app/services/models.pydash_app/pytests/test_agent_services.pydash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pydash_app/tune_tab/callbacks_runs.pytuner/tuning_scheduler.pydash_app/DEVELOPMENT.mddash_app/pytests/test_run_broker_simplification.pydash_app/compile_tab/build_selector.pytuner/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyclubb_jax/README.mdrun_scripts/run_tuner_job.py9a1b8b23408d3a5abe78ebae7dd1390755fa4fec1791407526000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUse JAX in tuner (#1383) This makes the JAX work through the new tuner, same sort of way the fortran does. Probably needs a little more testing but seems to be working properly now. * Support reusable JAX driver state and runtime batches * Add standalone JAX loss evaluation and consistency coverage * Keep standalone loss CLI coverage separate from tuning * Integrate JAX with managed tuner jobs and add bounded Jenkins coverage * Remove trailing whitespace from extracted loss CLI tests * Run JAX loss help checks in the JAX pytest suite * Keep JAX lifecycle coverage with native driver tests and document its origins * Document loss test scenarios, native counterparts and JAX extensions * Keep the native loss executable path intact in the test description * Explain managed tuning test ownership and native backend contracts * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Refresh JAX tuner integration for merged loss frontends Use the relocated standalone loss entry point and retain CLI checks only in their shared owner. Give each Jenkins tuning run a separate job directory so repeated builds can succeed. * Record invalid direct tuner requests as terminal errors Let the existing request and launcher error handlers report malformed JSON and non-string JAX options instead of crashing during bootstrap before writing job results. * Preserve winning parameter columns in tuner reruns Retain request physics overrides while excluding initialized values for tuned parameters. Window and full-case reruns now use the winning candidate values, including multiple columns and grouped override names. * Use the selected JAX runtime throughout Dash tuning Persist backend and per-job device settings through native and typed broker requests, saved revisions, continuation and result reruns. Reuse the launcher, shared device controls and rerun override resolver; supervise browser replay processes in the broker. * Allow run IDs in broker replay completion metadata Avoid a selector argument collision that killed the replay watcher before recording terminal state. Preserve run IDs and cancellation metadata while reporting completed jobs accurately. * Keep JAX device setup inside the launcher and backends Expose a standard-library selection interface and forward per-job device and preallocation settings through the SCM and tuner launch paths. Use the same backend configuration for discovery, provenance, and execution; remove GPU environment handling from Dash and the tuner. Validate with Dash/shared suites, focused launcher checks, a CPU tuning and replay workflow, and synthetic two-GPU discovery. * Forward device settings through the existing JAX selection option Extend the launcher-owned -options grammar with device=UUID and prealloc_gpu_mem=true|false, while retaining xla_prealloc compatibility. Remove the transient device-specific options from SCM and tuner scripts so they forward one opaque -jax value. Validate saved settings, discovery and replays through the same public interface; verify CPU tuning metrics remain identical. 2026-10-07 16:12:06 -05009a1b8b23408d3a5abe78ebae7dd1390755fa4fecUse JAX in tuner (#1383)editjenkins_tests/clubb_tuner/Jenkinsfileedittuner/README.mdeditclubb_jax/run_jax.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pyeditdash_app/pytests/test_run_broker_simplification.pyaddtuner/loss_backend.pyedittuner/job_runtime.pyeditdash_app/tune_tab/callbacks_runs.pyeditutilities/create_case_namelist.pyedittuner/tuning_worker.pydeletedash_app/shared/jax_device.pyedittuner/tuning_scheduler.pyeditdash_app/pytests/test_agent_services.pyeditclubb_jax/backends/cuda.pyedittuner/tune_clubb.pyeditdash_app/DEVELOPMENT.mdeditdash_app/run_tab/runtime.pyeditclubb_jax/README.mdeditdash_app/compile_tab/build_selector.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyedittuner/request.pyeditrun_scripts/run_tuner_job.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pyeditdash_app/shared/actions.pyedittuner/status.pyeditdash_app/profile_tab/runtime.pyeditdash_app/pytests/test_jax_device.pyaddtuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyaddtuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pyeditdash_app/services/models.pyadddash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyeditrun_scripts/README.mdadddash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pyeditdash_app/tune_tab/runtime.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pyeditdash_app/README.mdeditdash_app/compile_tab/callbacks.pyeditdash_app/shared/activity.pyrun_scripts/run_tuner.pydash_app/run_tab/tab.pydash_app/persistence.pyutilities/README.md.gitignoredash_app/run_tab/callbacks_selection.pyutilities/case_json_to_namelist.pydash_app/run_tab/layout.pydash_app/pytests/auto_llm_generated_pytests/test_case_editor.pydash_app/README.mdinput/case_setups/case_definitions.jsondash_app/assets/34_case_editor.jsdash_app/shared/actions.pyrun_scripts/run_scm_loss.pyutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pydash_app/run_tab/discovery.pydash_app/assets/12_case_editor.cssdash_app/assets/11_tab_run_theme.cssutilities/create_case_namelist.pytuner/case_defaults.pydash_app/profile_tab/runtime.pyinput/case_setups/READMEdash_app/run_tab/cases.py5f8b57f69c01c59fc3c4457178ae85d57894c1d91791415324000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd JSON case definitions and Dash case editor (#1389) This is mainly a dash update right now, but it adds json versions of our model files. Basically just 2 new files for that - each json stores default values then one entry for each case with overrides it is not default yet and the current system of defining cases is unchanged. * Add JSON case definitions and Dash case editor * Simplify named case lookup and remove queued snapshots * Remove model validation from JSON case conversion 2026-10-07 18:22:04 -05005f8b57f69c01c59fc3c4457178ae85d57894c1d9Add JSON case definitions and Dash case editor (#1389)editdash_app/run_tab/tab.pyadddash_app/assets/34_case_editor.jseditdash_app/run_tab/discovery.pyaddutilities/case_json_to_namelist.pyaddinput/case_setups/case_definitions.jsoneditutilities/create_case_namelist.pyadddash_app/pytests/auto_llm_generated_pytests/test_case_editor.pyedittuner/case_defaults.pyeditdash_app/shared/actions.pyeditdash_app/run_tab/layout.pyeditrun_scripts/run_scm_loss.pyeditdash_app/run_tab/callbacks_selection.pyadddash_app/assets/12_case_editor.csseditrun_scripts/run_tuner.pyeditdash_app/README.mdeditdash_app/assets/11_tab_run_theme.csseditdash_app/persistence.pyeditdash_app/profile_tab/runtime.pyeditutilities/README.mdadddash_app/run_tab/cases.pyeditinput/case_setups/READMEaddutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pyedit.gitignoretests/README.mdjenkins_tests/clubb_stats_output_consistency/Jenkinsfiletests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/run_stats_output_consistency.py166ec211468128c37d8bb4b917ffac337bf802471791416548000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun JAX statistics consistency with an explicit rounding tolerance (#1385) This adds a jax jenkins stage for the statistics consistency test. This is the test that runs clubb with different batches sizes and averaging methods, e.g - start by: run once with 60s output intervals all the way through - test: running with 300s output intervals should give the same stats as manually averaging 5 steps of 60s output - test: outputing only a "window" of stats data (like from timesteps 100-200 instead of whole run), should produce a window idendical to the 60s full output run - test: running 16 columns at once should produce the same as running 16 columns in batches of 4 at a time In fortran these comparisons should be BFB (other than the manually averaging one, which is only close), but in jax, changing things like the batch size can cause optimizations to happen differently, which breaks BFBness and seems to cause differences larger than expected by fortran. For example, the threshold for the manual averaging test in fortran is 1e-12, but for the jax we need 1e-9 even for the batch test. I added a tolerance, `jax_tolerance`, that I left named after jax for now since that is the only current reason that flag exists. This difficulty with jax wasn't unexpected - we also have to compile the fortran with `-O0` to get this test working, also to disable optimizations. There just seems to be less control over how jax does that, so I went with a "relax the tolerance for this specific instance" approach. * Support reusable JAX driver state and runtime batches * Expose JAX in the strict statistics consistency workflow * Keep JAX lifecycle coverage with native driver tests and document its origins * Reference native driver and statistics owners in the JAX test workflow * Keep full Fortran statistics source paths in the test description * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Keep statistics windows within the capped native case duration * Allow explicit JAX statistics tolerance for JIT rounding differences 2026-10-07 18:42:28 -0500166ec211468128c37d8bb4b917ffac337bf80247Run JAX statistics consistency with an explicit rounding tolerance (#1385)edittests/run_stats_output_consistency.pyedittests/README.mdeditjenkins_tests/clubb_stats_output_consistency/Jenkinsfileaddtests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/README.mdtests/run_timestep_tests.pyjenkins_tests/clubb_timestep/Jenkinsfileclubb_jax/README.mdclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pytests/run_timestep_sweep.pytests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.py341cac040a0d352fd5a4da6a5938a86d7d06e3321791417082000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun timestep sweep tests with JAX (#1384) Adding a jax run to the timestep test (now renamed timestep sweep because it's more descriptive). This was really slow on JAX at first - one trick was to add a compilation cache, so that different runs that only use different timesteps didn't need to be recompiled. From my undestanding this is super easy with jax, basically just set `JAX_COMPILATION_CACHE_DIR` to a directory the process can save compiled parts is all it takes, then the compiled parts can live there even after the processes dies, and future ones can reuse it. * Run existing timestep sweeps with the JAX runner * Explain the shared native and JAX timestep sweep behavior * Keep timestep checks aligned with current launcher and CLI conventions Select CPU explicitly in the bounded JAX stage and resolve optional output roots through the shared owner. Support standard single-dash help, reject ambiguous option abbreviations, and cover opaque runtime forwarding while preserving native defaults and exploratory status. Validate with 373 shared checks and four eight-step BOMEX/ATEX runs per backend at 60 and 600 seconds. * Rename the timestep sweep and run shared JAX cases at native defaults Select the 18 cases shared by the native sweep and JAX/Fortran comparison list. Remove Jenkins timestep and iteration overrides, update stage names and documentation, and preserve the sweep's stability-reporting behavior. Validate the selection and rename with 374 shared checks before live branch testing. * Reuse JAX compilations and parallelize case timestep sweeps Keep a backend-specific persistent cache outside the checkout and preserve explicit cache overrides. Run four isolated case sweeps, prioritize measured expensive cases, and print each completed report as a block while preserving timestep order and first-failure semantics. Validate cache reuse across fresh processes and cache clearing, scheduling/overlap/interruption contracts, 379 shared checks, and full 90-run cold-cache JAX/native matrices. 2026-10-07 18:51:22 -0500341cac040a0d352fd5a4da6a5938a86d7d06e332Run timestep sweep tests with JAX (#1384)edittests/README.mddeletetests/run_timestep_tests.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pyeditjenkins_tests/clubb_timestep/Jenkinsfileeditclubb_jax/README.mdeditclubb_jax/run_jax.pyaddtests/run_timestep_sweep.pyaddtests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.pyjenkins_tests/clubb_plots/JenkinsfileLLM_prompts/jenkins_workflow.mde92c2f24486a32610935ff4eede3512c67e313ea1791427833000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdd JAX comparison plots 2026-10-07 21:50:33 -0500e92c2f24486a32610935ff4eede3512c67e313eaAdd JAX comparison plotseditLLM_prompts/jenkins_workflow.mdeditjenkins_tests/clubb_plots/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse591http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/591/Started by an SCM change000183224822370.99190809080592e92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#59283224107644clubb_BFB_r8029_flags_gfortran_test #592592false59210228SUCCESS1791448030655http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/592/tuner/loss_backend.pytuner/job_runtime.pytuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyjenkins_tests/clubb_tuner/Jenkinsfileclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pydash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyrun_scripts/README.mddash_app/pytests/test_jax_device.pydash_app/shared/activity.pyclubb_jax/run_jax.pydash_app/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pytuner/request.pydash_app/compile_tab/callbacks.pydash_app/shared/actions.pydash_app/shared/jax_device.pyutilities/create_case_namelist.pydash_app/profile_tab/runtime.pydash_app/tune_tab/runtime.pytuner/tune_clubb.pyclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pytuner/tuning_worker.pydash_app/run_tab/runtime.pytuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pytuner/status.pyclubb_jax/backends/cuda.pydash_app/services/models.pydash_app/pytests/test_agent_services.pydash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pydash_app/tune_tab/callbacks_runs.pytuner/tuning_scheduler.pydash_app/DEVELOPMENT.mddash_app/pytests/test_run_broker_simplification.pydash_app/compile_tab/build_selector.pytuner/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyclubb_jax/README.mdrun_scripts/run_tuner_job.py9a1b8b23408d3a5abe78ebae7dd1390755fa4fec1791407526000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUse JAX in tuner (#1383) This makes the JAX work through the new tuner, same sort of way the fortran does. Probably needs a little more testing but seems to be working properly now. * Support reusable JAX driver state and runtime batches * Add standalone JAX loss evaluation and consistency coverage * Keep standalone loss CLI coverage separate from tuning * Integrate JAX with managed tuner jobs and add bounded Jenkins coverage * Remove trailing whitespace from extracted loss CLI tests * Run JAX loss help checks in the JAX pytest suite * Keep JAX lifecycle coverage with native driver tests and document its origins * Document loss test scenarios, native counterparts and JAX extensions * Keep the native loss executable path intact in the test description * Explain managed tuning test ownership and native backend contracts * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Refresh JAX tuner integration for merged loss frontends Use the relocated standalone loss entry point and retain CLI checks only in their shared owner. Give each Jenkins tuning run a separate job directory so repeated builds can succeed. * Record invalid direct tuner requests as terminal errors Let the existing request and launcher error handlers report malformed JSON and non-string JAX options instead of crashing during bootstrap before writing job results. * Preserve winning parameter columns in tuner reruns Retain request physics overrides while excluding initialized values for tuned parameters. Window and full-case reruns now use the winning candidate values, including multiple columns and grouped override names. * Use the selected JAX runtime throughout Dash tuning Persist backend and per-job device settings through native and typed broker requests, saved revisions, continuation and result reruns. Reuse the launcher, shared device controls and rerun override resolver; supervise browser replay processes in the broker. * Allow run IDs in broker replay completion metadata Avoid a selector argument collision that killed the replay watcher before recording terminal state. Preserve run IDs and cancellation metadata while reporting completed jobs accurately. * Keep JAX device setup inside the launcher and backends Expose a standard-library selection interface and forward per-job device and preallocation settings through the SCM and tuner launch paths. Use the same backend configuration for discovery, provenance, and execution; remove GPU environment handling from Dash and the tuner. Validate with Dash/shared suites, focused launcher checks, a CPU tuning and replay workflow, and synthetic two-GPU discovery. * Forward device settings through the existing JAX selection option Extend the launcher-owned -options grammar with device=UUID and prealloc_gpu_mem=true|false, while retaining xla_prealloc compatibility. Remove the transient device-specific options from SCM and tuner scripts so they forward one opaque -jax value. Validate saved settings, discovery and replays through the same public interface; verify CPU tuning metrics remain identical. 2026-10-07 16:12:06 -05009a1b8b23408d3a5abe78ebae7dd1390755fa4fecUse JAX in tuner (#1383)editjenkins_tests/clubb_tuner/Jenkinsfileedittuner/README.mdeditclubb_jax/run_jax.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pyeditdash_app/pytests/test_run_broker_simplification.pyaddtuner/loss_backend.pyedittuner/job_runtime.pyeditdash_app/tune_tab/callbacks_runs.pyeditutilities/create_case_namelist.pyedittuner/tuning_worker.pydeletedash_app/shared/jax_device.pyedittuner/tuning_scheduler.pyeditdash_app/pytests/test_agent_services.pyeditclubb_jax/backends/cuda.pyedittuner/tune_clubb.pyeditdash_app/DEVELOPMENT.mdeditdash_app/run_tab/runtime.pyeditclubb_jax/README.mdeditdash_app/compile_tab/build_selector.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyedittuner/request.pyeditrun_scripts/run_tuner_job.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pyeditdash_app/shared/actions.pyedittuner/status.pyeditdash_app/profile_tab/runtime.pyeditdash_app/pytests/test_jax_device.pyaddtuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyaddtuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pyeditdash_app/services/models.pyadddash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyeditrun_scripts/README.mdadddash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pyeditdash_app/tune_tab/runtime.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pyeditdash_app/README.mdeditdash_app/compile_tab/callbacks.pyeditdash_app/shared/activity.pyrun_scripts/run_tuner.pydash_app/run_tab/tab.pydash_app/persistence.pyutilities/README.md.gitignoredash_app/run_tab/callbacks_selection.pyutilities/case_json_to_namelist.pydash_app/run_tab/layout.pydash_app/pytests/auto_llm_generated_pytests/test_case_editor.pydash_app/README.mdinput/case_setups/case_definitions.jsondash_app/assets/34_case_editor.jsdash_app/shared/actions.pyrun_scripts/run_scm_loss.pyutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pydash_app/run_tab/discovery.pydash_app/assets/12_case_editor.cssdash_app/assets/11_tab_run_theme.cssutilities/create_case_namelist.pytuner/case_defaults.pydash_app/profile_tab/runtime.pyinput/case_setups/READMEdash_app/run_tab/cases.py5f8b57f69c01c59fc3c4457178ae85d57894c1d91791415324000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd JSON case definitions and Dash case editor (#1389) This is mainly a dash update right now, but it adds json versions of our model files. Basically just 2 new files for that - each json stores default values then one entry for each case with overrides it is not default yet and the current system of defining cases is unchanged. * Add JSON case definitions and Dash case editor * Simplify named case lookup and remove queued snapshots * Remove model validation from JSON case conversion 2026-10-07 18:22:04 -05005f8b57f69c01c59fc3c4457178ae85d57894c1d9Add JSON case definitions and Dash case editor (#1389)editdash_app/run_tab/tab.pyadddash_app/assets/34_case_editor.jseditdash_app/run_tab/discovery.pyaddutilities/case_json_to_namelist.pyaddinput/case_setups/case_definitions.jsoneditutilities/create_case_namelist.pyadddash_app/pytests/auto_llm_generated_pytests/test_case_editor.pyedittuner/case_defaults.pyeditdash_app/shared/actions.pyeditdash_app/run_tab/layout.pyeditrun_scripts/run_scm_loss.pyeditdash_app/run_tab/callbacks_selection.pyadddash_app/assets/12_case_editor.csseditrun_scripts/run_tuner.pyeditdash_app/README.mdeditdash_app/assets/11_tab_run_theme.csseditdash_app/persistence.pyeditdash_app/profile_tab/runtime.pyeditutilities/README.mdadddash_app/run_tab/cases.pyeditinput/case_setups/READMEaddutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pyedit.gitignoretests/README.mdjenkins_tests/clubb_stats_output_consistency/Jenkinsfiletests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/run_stats_output_consistency.py166ec211468128c37d8bb4b917ffac337bf802471791416548000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun JAX statistics consistency with an explicit rounding tolerance (#1385) This adds a jax jenkins stage for the statistics consistency test. This is the test that runs clubb with different batches sizes and averaging methods, e.g - start by: run once with 60s output intervals all the way through - test: running with 300s output intervals should give the same stats as manually averaging 5 steps of 60s output - test: outputing only a "window" of stats data (like from timesteps 100-200 instead of whole run), should produce a window idendical to the 60s full output run - test: running 16 columns at once should produce the same as running 16 columns in batches of 4 at a time In fortran these comparisons should be BFB (other than the manually averaging one, which is only close), but in jax, changing things like the batch size can cause optimizations to happen differently, which breaks BFBness and seems to cause differences larger than expected by fortran. For example, the threshold for the manual averaging test in fortran is 1e-12, but for the jax we need 1e-9 even for the batch test. I added a tolerance, `jax_tolerance`, that I left named after jax for now since that is the only current reason that flag exists. This difficulty with jax wasn't unexpected - we also have to compile the fortran with `-O0` to get this test working, also to disable optimizations. There just seems to be less control over how jax does that, so I went with a "relax the tolerance for this specific instance" approach. * Support reusable JAX driver state and runtime batches * Expose JAX in the strict statistics consistency workflow * Keep JAX lifecycle coverage with native driver tests and document its origins * Reference native driver and statistics owners in the JAX test workflow * Keep full Fortran statistics source paths in the test description * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Keep statistics windows within the capped native case duration * Allow explicit JAX statistics tolerance for JIT rounding differences 2026-10-07 18:42:28 -0500166ec211468128c37d8bb4b917ffac337bf80247Run JAX statistics consistency with an explicit rounding tolerance (#1385)edittests/run_stats_output_consistency.pyedittests/README.mdeditjenkins_tests/clubb_stats_output_consistency/Jenkinsfileaddtests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/README.mdtests/run_timestep_tests.pyjenkins_tests/clubb_timestep/Jenkinsfileclubb_jax/README.mdclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pytests/run_timestep_sweep.pytests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.py341cac040a0d352fd5a4da6a5938a86d7d06e3321791417082000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun timestep sweep tests with JAX (#1384) Adding a jax run to the timestep test (now renamed timestep sweep because it's more descriptive). This was really slow on JAX at first - one trick was to add a compilation cache, so that different runs that only use different timesteps didn't need to be recompiled. From my undestanding this is super easy with jax, basically just set `JAX_COMPILATION_CACHE_DIR` to a directory the process can save compiled parts is all it takes, then the compiled parts can live there even after the processes dies, and future ones can reuse it. * Run existing timestep sweeps with the JAX runner * Explain the shared native and JAX timestep sweep behavior * Keep timestep checks aligned with current launcher and CLI conventions Select CPU explicitly in the bounded JAX stage and resolve optional output roots through the shared owner. Support standard single-dash help, reject ambiguous option abbreviations, and cover opaque runtime forwarding while preserving native defaults and exploratory status. Validate with 373 shared checks and four eight-step BOMEX/ATEX runs per backend at 60 and 600 seconds. * Rename the timestep sweep and run shared JAX cases at native defaults Select the 18 cases shared by the native sweep and JAX/Fortran comparison list. Remove Jenkins timestep and iteration overrides, update stage names and documentation, and preserve the sweep's stability-reporting behavior. Validate the selection and rename with 374 shared checks before live branch testing. * Reuse JAX compilations and parallelize case timestep sweeps Keep a backend-specific persistent cache outside the checkout and preserve explicit cache overrides. Run four isolated case sweeps, prioritize measured expensive cases, and print each completed report as a block while preserving timestep order and first-failure semantics. Validate cache reuse across fresh processes and cache clearing, scheduling/overlap/interruption contracts, 379 shared checks, and full 90-run cold-cache JAX/native matrices. 2026-10-07 18:51:22 -0500341cac040a0d352fd5a4da6a5938a86d7d06e332Run timestep sweep tests with JAX (#1384)edittests/README.mddeletetests/run_timestep_tests.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pyeditjenkins_tests/clubb_timestep/Jenkinsfileeditclubb_jax/README.mdeditclubb_jax/run_jax.pyaddtests/run_timestep_sweep.pyaddtests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.pyjenkins_tests/clubb_plots/JenkinsfileLLM_prompts/jenkins_workflow.mde92c2f24486a32610935ff4eede3512c67e313ea1791427833000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdd JAX comparison plots 2026-10-07 21:50:33 -0500e92c2f24486a32610935ff4eede3512c67e313eaAdd JAX comparison plotseditLLM_prompts/jenkins_workflow.mdeditjenkins_tests/clubb_plots/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse591http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/591/Started by user Gunther HueblerhueblerGunther Huebler589350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#589787902107644clubb_BFB_r8029_flags_gfortran_test #589589false58910037FAILURE1791306240225http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/589/utilities/convert_acc_to_omp.bashe83e7d62179dd6c710b77216aea55df37600f8201791236009000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFix OpenMP GPU host_data conversion 2026-10-05 16:33:29 -0500e83e7d62179dd6c710b77216aea55df37600f820Fix OpenMP GPU host_data conversioneditutilities/convert_acc_to_omp.bashclubb_jax/backends/cpu.pyclubb_jax/pytests/auto_llm_generated_pytests/test_backends.pyclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pytests/pytests/auto_llm_generated_pytests/test_compile_compiler_selection.pyclubb_jax/pytests/auto_llm_generated_pytests/test_rocm_runtime.pyBUILD.mdclubb_jax/backends/metal.pyclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_portable_cholesky.pyclubb_jax/backends/__init__.pyclubb_jax/backends/rocm.pyclubb_jax/backends/cuda.pyclubb_jax/src/CLUBB_core/matrix_operations.pyclubb_jax/README.mdclubb_jax/requirements-rocm.txtclubb_jax/backends/common.pytests/run_jax_vs_fortran_cases.pycompile.pyclubb_jax/pytests/auto_llm_generated_pytests/test_runtime_info.pyclubb_jax/runtime_info.pyda614f85c180af844a77e80ddd4b61a94ce716b91791238822000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAMD/ROCM Support for Jax (#1376) This does 2 things: adds support for running on ROCM systems, this is the AMD GPU equivalent of cuda organize specific-device backend setup files, e.g GPU on nvidia needs cuda jax libraries, Apple needs metal, AMD needs rocm The only complication was the jax cholesky not working on AMD GPUs. Seems like a bug that's out of our control, so I left en environment flag to switch between the jax linalg call and a custom "portable" one. The portable one still passes the jax_vs_fortran comparison tests. Commits --- * Support native AMD ROCm JAX on CachyOS * Keep ROCm crash fixes and remove Morrison rounding workarounds * Separate JAX launcher and inspection backend policies 2026-10-05 17:20:22 -0500da614f85c180af844a77e80ddd4b61a94ce716b9AMD/ROCM Support for Jax 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inherited JAX pytests and remove binding dependencies (#1379) This just prunes lots of outdated and unneccesary pytests. These are all LLM generated and I just never went through them before. Probably still needs cleanup. 2026-10-05 18:50:16 -0500350a98e42b5a193c8471cc67c288bce95e7f7ac0Prune inherited JAX pytests and remove binding dependencies (#1379)deleteclubb_jax/pytests/auto_llm_generated_pytests/test_diagnostic_cache.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_liquid_cloud_frac_component.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_penta_solver.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_compute_sigma_sqd_w.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_jit_compile.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_forcing_port_structure.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_set_sfc_value_of_flux_profiles.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_remapping_ppm.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_splatting_autodiff.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_w_hm_n.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_integration.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_silhs_port_structure.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial_rr_Nr.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_mono_flux_limiter.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_new_hybrid_pdf_main.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_pvertinterp.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_cloud_feedback_sfclyr.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_denorm_transform_corr.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_binormal_moments.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_mean_const.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_numerical_check_setters.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_interpolation.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calendar.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_constants.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_compute_rtp2_from_chi.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_rcm_sat_adj.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_upxp.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_index_mapping.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_mixed_moment_pdf_integrals.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_kk_local_means.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_xm_correction_wpxp_cl.pyaddclubb_jax/tests/run_standalone_no_bindings_test.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_smooth_heaviside.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_mean_adv.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_Nc_Ncn_eqns.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_lba_sfclyr.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_coefs_semiimpl.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_component_corr_ip.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_KK_Nrm_tendencies.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_cos_solar_zen.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_comp_mu_sigma_hm.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_compute_uv_tndcy.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_luhar_3d_driver.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_validation_checks.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_cholesky_corr_mtx_approx.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_vs_MM.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_windm_edsclrm_lhs.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_radiation_port_structure.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_quadrivar_NNLL_covar_eq_swap.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_calculate_thvm.pyeditclubb_jax/README.mdeditclubb_jax/pytests/auto_llm_generated_pytests/test_stats_writer.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_comp_corr_norm.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_limits_f_x_responder.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_binormal_moments.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_close_luhar_pdf.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_ly93_pdf.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_max_cubic_root.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_penta_faithful.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_ice_dfsn.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_corr_norm_cholesky.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_rad_extended_atmosphere.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_spurious_source.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_cloud_correlate.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_luhar_params.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_utilities.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_setter_var_params.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_adg2_driver.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_component_precip_frac_specify.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_kk_autoconversion.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_stats_output_time.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_sfc_varnce.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_error_paths.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_differentiability.pyeditjenkins_tests/clubb_jax/Jenkinsfileeditclubb_jax/pytests/auto_llm_generated_pytests/test_saturation.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_calc_wp3_on_wp2.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_hydrometp2_zt.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_comp_corrs_binormal.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_correlations.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_spec_hum_to_mixing_ratio.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_const_limits.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_mirror_lower_triangular.pyedittests/run_pytests.sheditclubb_jax/pytests/auto_llm_generated_pytests/test_adg1_adg2_responder_params.pyaddclubb_jax/tests/run_morrison_interface_test.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad_lba.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_trivar_NNL_covar_eq.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_precip_fraction.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_mpace_b_lba_tndcy.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_new_pdf_main.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_kk_upscaled_variances.pyedittests/README.mdeditclubb_jax/pytests/auto_llm_generated_pytests/test_gabls3_night_stability.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_params_pack_roundtrip.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_hydrostatic.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_moment_integrals.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_cholesky_factor.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_update_xp2_mc.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_standalone_jax.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_hydrometeor_mixed_moments.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_remapping_module.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_silhs_surface_schemes.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_roots.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_xpthvp_terms.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_liq_water_path.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_clip_variance.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_responder_params.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_bivar_NL_mean_eq.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_no_dead_functions.pyeditLLM_prompts/pytest_workflow.mdeditclubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_autodiff.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_soil_vegetation.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_ice_cloud_frac_component.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_diffusion.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_advance_helper_extras.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_xpyp_term_ta_pdf.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_grid_operators.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_param_names.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_no_dead_imports.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_const_vs_MM.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_new_pdf.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_transform_pdf_chi_eta_component.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_covar_KK_mixt_frac_linearity.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_new_tsdadg_pdf.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_port_structure.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_clip_covar.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_routine_placement.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_xm_wpxp_terms.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_clip_skewness.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_compute_xp3.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_pos_definite.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pressure_sounding_z.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_sponge_damp_xp23.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_sunray_sw.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_config_flags_complete.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_params_init.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_calc_xprcp_component.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_xp2_xpyp_terms.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_skx_func.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_bugsrad.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_inverse_hydrostatic.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_wpxpyp_pdf.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_w_up_in_cloud.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_xpyp_term_ta_godunov.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_compute_gamma_skw.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_mean.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_sliding_window.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_wp2_wp3_lhs_terms.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_T_in_K.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_numerics_autodiff.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_kk_covariance_batch.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_quadrivar_covar_const_limits.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_mean_vert_vel_up_down.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_solver.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_hydromet_pdf_parameter.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_sfc_flux.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_cloud_drop_sed.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_integrals_all_mm.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calc_wp4_pdf.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_wp2_wp3_terms.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_windm_edsclrm_rhs.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_corr_varnce.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_fill_holes_global.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_calculate_w_responder_params.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_time_select.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_trivar_NLL_mean_eq.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_advance_xp3_simplified.pyaddclubb_jax/tests/run_pdf_monte_carlo_test.pydeleteclubb_jax/pytests/auto_llm_generated_pytests/test_mixing_length.pygithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse590http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/588http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/588/Started by an SCM change000183224822370.99190809080592e92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#59283224107644clubb_BFB_r8029_flags_gfortran_test #592592false59210228SUCCESS1791448030655http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/592/tuner/loss_backend.pytuner/job_runtime.pytuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyjenkins_tests/clubb_tuner/Jenkinsfileclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pydash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyrun_scripts/README.mddash_app/pytests/test_jax_device.pydash_app/shared/activity.pyclubb_jax/run_jax.pydash_app/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pytuner/request.pydash_app/compile_tab/callbacks.pydash_app/shared/actions.pydash_app/shared/jax_device.pyutilities/create_case_namelist.pydash_app/profile_tab/runtime.pydash_app/tune_tab/runtime.pytuner/tune_clubb.pyclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pytuner/tuning_worker.pydash_app/run_tab/runtime.pytuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pytuner/status.pyclubb_jax/backends/cuda.pydash_app/services/models.pydash_app/pytests/test_agent_services.pydash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pydash_app/tune_tab/callbacks_runs.pytuner/tuning_scheduler.pydash_app/DEVELOPMENT.mddash_app/pytests/test_run_broker_simplification.pydash_app/compile_tab/build_selector.pytuner/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyclubb_jax/README.mdrun_scripts/run_tuner_job.py9a1b8b23408d3a5abe78ebae7dd1390755fa4fec1791407526000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUse JAX in tuner (#1383) This makes the JAX work through the new tuner, same sort of way the fortran does. Probably needs a little more testing but seems to be working properly now. * Support reusable JAX driver state and runtime batches * Add standalone JAX loss evaluation and consistency coverage * Keep standalone loss CLI coverage separate from tuning * Integrate JAX with managed tuner jobs and add bounded Jenkins coverage * Remove trailing whitespace from extracted loss CLI tests * Run JAX loss help checks in the JAX pytest suite * Keep JAX lifecycle coverage with native driver tests and document its origins * Document loss test scenarios, native counterparts and JAX extensions * Keep the native loss executable path intact in the test description * Explain managed tuning test ownership and native backend contracts * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Refresh JAX tuner integration for merged loss frontends Use the relocated standalone loss entry point and retain CLI checks only in their shared owner. Give each Jenkins tuning run a separate job directory so repeated builds can succeed. * Record invalid direct tuner requests as terminal errors Let the existing request and launcher error handlers report malformed JSON and non-string JAX options instead of crashing during bootstrap before writing job results. * Preserve winning parameter columns in tuner reruns Retain request physics overrides while excluding initialized values for tuned parameters. Window and full-case reruns now use the winning candidate values, including multiple columns and grouped override names. * Use the selected JAX runtime throughout Dash tuning Persist backend and per-job device settings through native and typed broker requests, saved revisions, continuation and result reruns. Reuse the launcher, shared device controls and rerun override resolver; supervise browser replay processes in the broker. * Allow run IDs in broker replay completion metadata Avoid a selector argument collision that killed the replay watcher before recording terminal state. Preserve run IDs and cancellation metadata while reporting completed jobs accurately. * Keep JAX device setup inside the launcher and backends Expose a standard-library selection interface and forward per-job device and preallocation settings through the SCM and tuner launch paths. Use the same backend configuration for discovery, provenance, and execution; remove GPU environment handling from Dash and the tuner. Validate with Dash/shared suites, focused launcher checks, a CPU tuning and replay workflow, and synthetic two-GPU discovery. * Forward device settings through the existing JAX selection option Extend the launcher-owned -options grammar with device=UUID and prealloc_gpu_mem=true|false, while retaining xla_prealloc compatibility. Remove the transient device-specific options from SCM and tuner scripts so they forward one opaque -jax value. Validate saved settings, discovery and replays through the same public interface; verify CPU tuning metrics remain identical. 2026-10-07 16:12:06 -05009a1b8b23408d3a5abe78ebae7dd1390755fa4fecUse JAX in tuner (#1383)editjenkins_tests/clubb_tuner/Jenkinsfileedittuner/README.mdeditclubb_jax/run_jax.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pyeditdash_app/pytests/test_run_broker_simplification.pyaddtuner/loss_backend.pyedittuner/job_runtime.pyeditdash_app/tune_tab/callbacks_runs.pyeditutilities/create_case_namelist.pyedittuner/tuning_worker.pydeletedash_app/shared/jax_device.pyedittuner/tuning_scheduler.pyeditdash_app/pytests/test_agent_services.pyeditclubb_jax/backends/cuda.pyedittuner/tune_clubb.pyeditdash_app/DEVELOPMENT.mdeditdash_app/run_tab/runtime.pyeditclubb_jax/README.mdeditdash_app/compile_tab/build_selector.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyedittuner/request.pyeditrun_scripts/run_tuner_job.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pyeditdash_app/shared/actions.pyedittuner/status.pyeditdash_app/profile_tab/runtime.pyeditdash_app/pytests/test_jax_device.pyaddtuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyaddtuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pyeditdash_app/services/models.pyadddash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyeditrun_scripts/README.mdadddash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pyeditdash_app/tune_tab/runtime.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pyeditdash_app/README.mdeditdash_app/compile_tab/callbacks.pyeditdash_app/shared/activity.pyrun_scripts/run_tuner.pydash_app/run_tab/tab.pydash_app/persistence.pyutilities/README.md.gitignoredash_app/run_tab/callbacks_selection.pyutilities/case_json_to_namelist.pydash_app/run_tab/layout.pydash_app/pytests/auto_llm_generated_pytests/test_case_editor.pydash_app/README.mdinput/case_setups/case_definitions.jsondash_app/assets/34_case_editor.jsdash_app/shared/actions.pyrun_scripts/run_scm_loss.pyutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pydash_app/run_tab/discovery.pydash_app/assets/12_case_editor.cssdash_app/assets/11_tab_run_theme.cssutilities/create_case_namelist.pytuner/case_defaults.pydash_app/profile_tab/runtime.pyinput/case_setups/READMEdash_app/run_tab/cases.py5f8b57f69c01c59fc3c4457178ae85d57894c1d91791415324000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd JSON case definitions and Dash case editor (#1389) This is mainly a dash update right now, but it adds json versions of our model files. Basically just 2 new files for that - each json stores default values then one entry for each case with overrides it is not default yet and the current system of defining cases is unchanged. * Add JSON case definitions and Dash case editor * Simplify named case lookup and remove queued snapshots * Remove model validation from JSON case conversion 2026-10-07 18:22:04 -05005f8b57f69c01c59fc3c4457178ae85d57894c1d9Add JSON case definitions and Dash case editor (#1389)editdash_app/run_tab/tab.pyadddash_app/assets/34_case_editor.jseditdash_app/run_tab/discovery.pyaddutilities/case_json_to_namelist.pyaddinput/case_setups/case_definitions.jsoneditutilities/create_case_namelist.pyadddash_app/pytests/auto_llm_generated_pytests/test_case_editor.pyedittuner/case_defaults.pyeditdash_app/shared/actions.pyeditdash_app/run_tab/layout.pyeditrun_scripts/run_scm_loss.pyeditdash_app/run_tab/callbacks_selection.pyadddash_app/assets/12_case_editor.csseditrun_scripts/run_tuner.pyeditdash_app/README.mdeditdash_app/assets/11_tab_run_theme.csseditdash_app/persistence.pyeditdash_app/profile_tab/runtime.pyeditutilities/README.mdadddash_app/run_tab/cases.pyeditinput/case_setups/READMEaddutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pyedit.gitignoretests/README.mdjenkins_tests/clubb_stats_output_consistency/Jenkinsfiletests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/run_stats_output_consistency.py166ec211468128c37d8bb4b917ffac337bf802471791416548000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun JAX statistics consistency with an explicit rounding tolerance (#1385) This adds a jax jenkins stage for the statistics consistency test. This is the test that runs clubb with different batches sizes and averaging methods, e.g - start by: run once with 60s output intervals all the way through - test: running with 300s output intervals should give the same stats as manually averaging 5 steps of 60s output - test: outputing only a "window" of stats data (like from timesteps 100-200 instead of whole run), should produce a window idendical to the 60s full output run - test: running 16 columns at once should produce the same as running 16 columns in batches of 4 at a time In fortran these comparisons should be BFB (other than the manually averaging one, which is only close), but in jax, changing things like the batch size can cause optimizations to happen differently, which breaks BFBness and seems to cause differences larger than expected by fortran. For example, the threshold for the manual averaging test in fortran is 1e-12, but for the jax we need 1e-9 even for the batch test. I added a tolerance, `jax_tolerance`, that I left named after jax for now since that is the only current reason that flag exists. This difficulty with jax wasn't unexpected - we also have to compile the fortran with `-O0` to get this test working, also to disable optimizations. There just seems to be less control over how jax does that, so I went with a "relax the tolerance for this specific instance" approach. * Support reusable JAX driver state and runtime batches * Expose JAX in the strict statistics consistency workflow * Keep JAX lifecycle coverage with native driver tests and document its origins * Reference native driver and statistics owners in the JAX test workflow * Keep full Fortran statistics source paths in the test description * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Keep statistics windows within the capped native case duration * Allow explicit JAX statistics tolerance for JIT rounding differences 2026-10-07 18:42:28 -0500166ec211468128c37d8bb4b917ffac337bf80247Run JAX statistics consistency with an explicit rounding tolerance (#1385)edittests/run_stats_output_consistency.pyedittests/README.mdeditjenkins_tests/clubb_stats_output_consistency/Jenkinsfileaddtests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/README.mdtests/run_timestep_tests.pyjenkins_tests/clubb_timestep/Jenkinsfileclubb_jax/README.mdclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pytests/run_timestep_sweep.pytests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.py341cac040a0d352fd5a4da6a5938a86d7d06e3321791417082000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun timestep sweep tests with JAX (#1384) Adding a jax run to the timestep test (now renamed timestep sweep because it's more descriptive). This was really slow on JAX at first - one trick was to add a compilation cache, so that different runs that only use different timesteps didn't need to be recompiled. From my undestanding this is super easy with jax, basically just set `JAX_COMPILATION_CACHE_DIR` to a directory the process can save compiled parts is all it takes, then the compiled parts can live there even after the processes dies, and future ones can reuse it. * Run existing timestep sweeps with the JAX runner * Explain the shared native and JAX timestep sweep behavior * Keep timestep checks aligned with current launcher and CLI conventions Select CPU explicitly in the bounded JAX stage and resolve optional output roots through the shared owner. Support standard single-dash help, reject ambiguous option abbreviations, and cover opaque runtime forwarding while preserving native defaults and exploratory status. Validate with 373 shared checks and four eight-step BOMEX/ATEX runs per backend at 60 and 600 seconds. * Rename the timestep sweep and run shared JAX cases at native defaults Select the 18 cases shared by the native sweep and JAX/Fortran comparison list. Remove Jenkins timestep and iteration overrides, update stage names and documentation, and preserve the sweep's stability-reporting behavior. Validate the selection and rename with 374 shared checks before live branch testing. * Reuse JAX compilations and parallelize case timestep sweeps Keep a backend-specific persistent cache outside the checkout and preserve explicit cache overrides. Run four isolated case sweeps, prioritize measured expensive cases, and print each completed report as a block while preserving timestep order and first-failure semantics. Validate cache reuse across fresh processes and cache clearing, scheduling/overlap/interruption contracts, 379 shared checks, and full 90-run cold-cache JAX/native matrices. 2026-10-07 18:51:22 -0500341cac040a0d352fd5a4da6a5938a86d7d06e332Run timestep sweep tests with JAX (#1384)edittests/README.mddeletetests/run_timestep_tests.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pyeditjenkins_tests/clubb_timestep/Jenkinsfileeditclubb_jax/README.mdeditclubb_jax/run_jax.pyaddtests/run_timestep_sweep.pyaddtests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.pyjenkins_tests/clubb_plots/JenkinsfileLLM_prompts/jenkins_workflow.mde92c2f24486a32610935ff4eede3512c67e313ea1791427833000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdd JAX comparison plots 2026-10-07 21:50:33 -0500e92c2f24486a32610935ff4eede3512c67e313eaAdd JAX comparison plotseditLLM_prompts/jenkins_workflow.mdeditjenkins_tests/clubb_plots/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse591http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/591/Started by an SCM change000183224822370.99190809080592e92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/mastere92c2f24486a32610935ff4eede3512c67e313eae92c2f24486a32610935ff4eede3512c67e313earefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#59283224107644clubb_BFB_r8029_flags_gfortran_test #592592false59210228SUCCESS1791448030655http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/592/tuner/loss_backend.pytuner/job_runtime.pytuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyjenkins_tests/clubb_tuner/Jenkinsfileclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pydash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyrun_scripts/README.mddash_app/pytests/test_jax_device.pydash_app/shared/activity.pyclubb_jax/run_jax.pydash_app/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pytuner/request.pydash_app/compile_tab/callbacks.pydash_app/shared/actions.pydash_app/shared/jax_device.pyutilities/create_case_namelist.pydash_app/profile_tab/runtime.pydash_app/tune_tab/runtime.pytuner/tune_clubb.pyclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pytuner/tuning_worker.pydash_app/run_tab/runtime.pytuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pytuner/status.pyclubb_jax/backends/cuda.pydash_app/services/models.pydash_app/pytests/test_agent_services.pydash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pydash_app/tune_tab/callbacks_runs.pytuner/tuning_scheduler.pydash_app/DEVELOPMENT.mddash_app/pytests/test_run_broker_simplification.pydash_app/compile_tab/build_selector.pytuner/README.mdtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyclubb_jax/README.mdrun_scripts/run_tuner_job.py9a1b8b23408d3a5abe78ebae7dd1390755fa4fec1791407526000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUse JAX in tuner (#1383) This makes the JAX work through the new tuner, same sort of way the fortran does. Probably needs a little more testing but seems to be working properly now. * Support reusable JAX driver state and runtime batches * Add standalone JAX loss evaluation and consistency coverage * Keep standalone loss CLI coverage separate from tuning * Integrate JAX with managed tuner jobs and add bounded Jenkins coverage * Remove trailing whitespace from extracted loss CLI tests * Run JAX loss help checks in the JAX pytest suite * Keep JAX lifecycle coverage with native driver tests and document its origins * Document loss test scenarios, native counterparts and JAX extensions * Keep the native loss executable path intact in the test description * Explain managed tuning test ownership and native backend contracts * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Refresh JAX tuner integration for merged loss frontends Use the relocated standalone loss entry point and retain CLI checks only in their shared owner. Give each Jenkins tuning run a separate job directory so repeated builds can succeed. * Record invalid direct tuner requests as terminal errors Let the existing request and launcher error handlers report malformed JSON and non-string JAX options instead of crashing during bootstrap before writing job results. * Preserve winning parameter columns in tuner reruns Retain request physics overrides while excluding initialized values for tuned parameters. Window and full-case reruns now use the winning candidate values, including multiple columns and grouped override names. * Use the selected JAX runtime throughout Dash tuning Persist backend and per-job device settings through native and typed broker requests, saved revisions, continuation and result reruns. Reuse the launcher, shared device controls and rerun override resolver; supervise browser replay processes in the broker. * Allow run IDs in broker replay completion metadata Avoid a selector argument collision that killed the replay watcher before recording terminal state. Preserve run IDs and cancellation metadata while reporting completed jobs accurately. * Keep JAX device setup inside the launcher and backends Expose a standard-library selection interface and forward per-job device and preallocation settings through the SCM and tuner launch paths. Use the same backend configuration for discovery, provenance, and execution; remove GPU environment handling from Dash and the tuner. Validate with Dash/shared suites, focused launcher checks, a CPU tuning and replay workflow, and synthetic two-GPU discovery. * Forward device settings through the existing JAX selection option Extend the launcher-owned -options grammar with device=UUID and prealloc_gpu_mem=true|false, while retaining xla_prealloc compatibility. Remove the transient device-specific options from SCM and tuner scripts so they forward one opaque -jax value. Validate saved settings, discovery and replays through the same public interface; verify CPU tuning metrics remain identical. 2026-10-07 16:12:06 -05009a1b8b23408d3a5abe78ebae7dd1390755fa4fecUse JAX in tuner (#1383)editjenkins_tests/clubb_tuner/Jenkinsfileedittuner/README.mdeditclubb_jax/run_jax.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_device_selection.pyeditdash_app/pytests/test_run_broker_simplification.pyaddtuner/loss_backend.pyedittuner/job_runtime.pyeditdash_app/tune_tab/callbacks_runs.pyeditutilities/create_case_namelist.pyedittuner/tuning_worker.pydeletedash_app/shared/jax_device.pyedittuner/tuning_scheduler.pyeditdash_app/pytests/test_agent_services.pyeditclubb_jax/backends/cuda.pyedittuner/tune_clubb.pyeditdash_app/DEVELOPMENT.mdeditdash_app/run_tab/runtime.pyeditclubb_jax/README.mdeditdash_app/compile_tab/build_selector.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_backend.pyedittuner/request.pyeditrun_scripts/run_tuner_job.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pyeditdash_app/shared/actions.pyedittuner/status.pyeditdash_app/profile_tab/runtime.pyeditdash_app/pytests/test_jax_device.pyaddtuner/pytests/auto_llm_generated_pytests/test_tuner_top_overrides.pyaddtuner/pytests/auto_llm_generated_pytests/test_runtime_device_settings.pyeditdash_app/services/models.pyadddash_app/pytests/auto_llm_generated_pytests/test_tune_replay_completion.pyeditrun_scripts/README.mdadddash_app/pytests/auto_llm_generated_pytests/test_jax_tuning_runtime.pyeditdash_app/tune_tab/runtime.pyaddtuner/pytests/auto_llm_generated_pytests/test_jax_launch_errors.pyeditdash_app/README.mdeditdash_app/compile_tab/callbacks.pyeditdash_app/shared/activity.pyrun_scripts/run_tuner.pydash_app/run_tab/tab.pydash_app/persistence.pyutilities/README.md.gitignoredash_app/run_tab/callbacks_selection.pyutilities/case_json_to_namelist.pydash_app/run_tab/layout.pydash_app/pytests/auto_llm_generated_pytests/test_case_editor.pydash_app/README.mdinput/case_setups/case_definitions.jsondash_app/assets/34_case_editor.jsdash_app/shared/actions.pyrun_scripts/run_scm_loss.pyutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pydash_app/run_tab/discovery.pydash_app/assets/12_case_editor.cssdash_app/assets/11_tab_run_theme.cssutilities/create_case_namelist.pytuner/case_defaults.pydash_app/profile_tab/runtime.pyinput/case_setups/READMEdash_app/run_tab/cases.py5f8b57f69c01c59fc3c4457178ae85d57894c1d91791415324000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd JSON case definitions and Dash case editor (#1389) This is mainly a dash update right now, but it adds json versions of our model files. Basically just 2 new files for that - each json stores default values then one entry for each case with overrides it is not default yet and the current system of defining cases is unchanged. * Add JSON case definitions and Dash case editor * Simplify named case lookup and remove queued snapshots * Remove model validation from JSON case conversion 2026-10-07 18:22:04 -05005f8b57f69c01c59fc3c4457178ae85d57894c1d9Add JSON case definitions and Dash case editor (#1389)editdash_app/run_tab/tab.pyadddash_app/assets/34_case_editor.jseditdash_app/run_tab/discovery.pyaddutilities/case_json_to_namelist.pyaddinput/case_setups/case_definitions.jsoneditutilities/create_case_namelist.pyadddash_app/pytests/auto_llm_generated_pytests/test_case_editor.pyedittuner/case_defaults.pyeditdash_app/shared/actions.pyeditdash_app/run_tab/layout.pyeditrun_scripts/run_scm_loss.pyeditdash_app/run_tab/callbacks_selection.pyadddash_app/assets/12_case_editor.csseditrun_scripts/run_tuner.pyeditdash_app/README.mdeditdash_app/assets/11_tab_run_theme.csseditdash_app/persistence.pyeditdash_app/profile_tab/runtime.pyeditutilities/README.mdadddash_app/run_tab/cases.pyeditinput/case_setups/READMEaddutilities/pytests/auto_llm_generated_pytests/test_case_json_to_namelist.pyedit.gitignoretests/README.mdjenkins_tests/clubb_stats_output_consistency/Jenkinsfiletests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/run_stats_output_consistency.py166ec211468128c37d8bb4b917ffac337bf802471791416548000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun JAX statistics consistency with an explicit rounding tolerance (#1385) This adds a jax jenkins stage for the statistics consistency test. This is the test that runs clubb with different batches sizes and averaging methods, e.g - start by: run once with 60s output intervals all the way through - test: running with 300s output intervals should give the same stats as manually averaging 5 steps of 60s output - test: outputing only a "window" of stats data (like from timesteps 100-200 instead of whole run), should produce a window idendical to the 60s full output run - test: running 16 columns at once should produce the same as running 16 columns in batches of 4 at a time In fortran these comparisons should be BFB (other than the manually averaging one, which is only close), but in jax, changing things like the batch size can cause optimizations to happen differently, which breaks BFBness and seems to cause differences larger than expected by fortran. For example, the threshold for the manual averaging test in fortran is 1e-12, but for the jax we need 1e-9 even for the batch test. I added a tolerance, `jax_tolerance`, that I left named after jax for now since that is the only current reason that flag exists. This difficulty with jax wasn't unexpected - we also have to compile the fortran with `-O0` to get this test working, also to disable optimizations. There just seems to be less control over how jax does that, so I went with a "relax the tolerance for this specific instance" approach. * Support reusable JAX driver state and runtime batches * Expose JAX in the strict statistics consistency workflow * Keep JAX lifecycle coverage with native driver tests and document its origins * Reference native driver and statistics owners in the JAX test workflow * Keep full Fortran statistics source paths in the test description * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Keep statistics windows within the capped native case duration * Allow explicit JAX statistics tolerance for JIT rounding differences 2026-10-07 18:42:28 -0500166ec211468128c37d8bb4b917ffac337bf80247Run JAX statistics consistency with an explicit rounding tolerance (#1385)edittests/run_stats_output_consistency.pyedittests/README.mdeditjenkins_tests/clubb_stats_output_consistency/Jenkinsfileaddtests/pytests/auto_llm_generated_pytests/test_run_stats_output_consistency.pytests/README.mdtests/run_timestep_tests.pyjenkins_tests/clubb_timestep/Jenkinsfileclubb_jax/README.mdclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pytests/run_timestep_sweep.pytests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.py341cac040a0d352fd5a4da6a5938a86d7d06e3321791417082000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comRun timestep sweep tests with JAX (#1384) Adding a jax run to the timestep test (now renamed timestep sweep because it's more descriptive). This was really slow on JAX at first - one trick was to add a compilation cache, so that different runs that only use different timesteps didn't need to be recompiled. From my undestanding this is super easy with jax, basically just set `JAX_COMPILATION_CACHE_DIR` to a directory the process can save compiled parts is all it takes, then the compiled parts can live there even after the processes dies, and future ones can reuse it. * Run existing timestep sweeps with the JAX runner * Explain the shared native and JAX timestep sweep behavior * Keep timestep checks aligned with current launcher and CLI conventions Select CPU explicitly in the bounded JAX stage and resolve optional output roots through the shared owner. Support standard single-dash help, reject ambiguous option abbreviations, and cover opaque runtime forwarding while preserving native defaults and exploratory status. Validate with 373 shared checks and four eight-step BOMEX/ATEX runs per backend at 60 and 600 seconds. * Rename the timestep sweep and run shared JAX cases at native defaults Select the 18 cases shared by the native sweep and JAX/Fortran comparison list. Remove Jenkins timestep and iteration overrides, update stage names and documentation, and preserve the sweep's stability-reporting behavior. Validate the selection and rename with 374 shared checks before live branch testing. * Reuse JAX compilations and parallelize case timestep sweeps Keep a backend-specific persistent cache outside the checkout and preserve explicit cache overrides. Run four isolated case sweeps, prioritize measured expensive cases, and print each completed report as a block while preserving timestep order and first-failure semantics. Validate cache reuse across fresh processes and cache clearing, scheduling/overlap/interruption contracts, 379 shared checks, and full 90-run cold-cache JAX/native matrices. 2026-10-07 18:51:22 -0500341cac040a0d352fd5a4da6a5938a86d7d06e332Run timestep sweep tests with JAX (#1384)edittests/README.mddeletetests/run_timestep_tests.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_compilation_cache.pyeditjenkins_tests/clubb_timestep/Jenkinsfileeditclubb_jax/README.mdeditclubb_jax/run_jax.pyaddtests/run_timestep_sweep.pyaddtests/pytests/auto_llm_generated_pytests/test_run_timestep_sweep.pyjenkins_tests/clubb_plots/JenkinsfileLLM_prompts/jenkins_workflow.mde92c2f24486a32610935ff4eede3512c67e313ea1791427833000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdd JAX comparison plots 2026-10-07 21:50:33 -0500e92c2f24486a32610935ff4eede3512c67e313eaAdd JAX comparison plotseditLLM_prompts/jenkins_workflow.mdeditjenkins_tests/clubb_plots/Jenkinsfilegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse591http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/591/Started by user Gunther HueblerhueblerGunther Huebler589350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#589787902107644clubb_BFB_r8029_flags_gfortran_test #589589false58910037FAILURE1791306240225http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/589/utilities/convert_acc_to_omp.bashe83e7d62179dd6c710b77216aea55df37600f8201791236009000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFix OpenMP GPU host_data conversion 2026-10-05 16:33:29 -0500e83e7d62179dd6c710b77216aea55df37600f820Fix OpenMP GPU host_data conversioneditutilities/convert_acc_to_omp.bashclubb_jax/backends/cpu.pyclubb_jax/pytests/auto_llm_generated_pytests/test_backends.pyclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pytests/pytests/auto_llm_generated_pytests/test_compile_compiler_selection.pyclubb_jax/pytests/auto_llm_generated_pytests/test_rocm_runtime.pyBUILD.mdclubb_jax/backends/metal.pyclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_portable_cholesky.pyclubb_jax/backends/__init__.pyclubb_jax/backends/rocm.pyclubb_jax/backends/cuda.pyclubb_jax/src/CLUBB_core/matrix_operations.pyclubb_jax/README.mdclubb_jax/requirements-rocm.txtclubb_jax/backends/common.pytests/run_jax_vs_fortran_cases.pycompile.pyclubb_jax/pytests/auto_llm_generated_pytests/test_runtime_info.pyclubb_jax/runtime_info.pyda614f85c180af844a77e80ddd4b61a94ce716b91791238822000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAMD/ROCM Support for Jax (#1376) This does 2 things: adds support for running on ROCM systems, this is the AMD GPU equivalent of cuda organize specific-device backend setup files, e.g GPU on nvidia needs cuda jax libraries, Apple needs metal, AMD needs rocm The only complication was the jax cholesky not working on AMD GPUs. Seems like a bug that's out of our control, so I left en environment flag to switch between the jax linalg call and a custom "portable" one. The portable one still passes the jax_vs_fortran comparison tests. Commits --- * Support native AMD ROCm JAX on CachyOS * Keep ROCm crash fixes and remove Morrison rounding workarounds * Separate JAX launcher and inspection backend policies 2026-10-05 17:20:22 -0500da614f85c180af844a77e80ddd4b61a94ce716b9AMD/ROCM Support for Jax 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inherited JAX pytests and remove binding dependencies (#1379) This just prunes lots of outdated and unneccesary pytests. These are all LLM generated and I just never went through them before. Probably still needs cleanup. 2026-10-05 18:50:16 -0500350a98e42b5a193c8471cc67c288bce95e7f7ac0Prune inherited JAX pytests and remove binding dependencies 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