Started by user Gunther HueblerhueblerGunther Huebler590350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.githttp://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/artifacthttp://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/changeshttp://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/pipeline-overviewhttp://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/testReportfalseUpdate sys_admin RepoRun Python Testfalse#59010275999030clubb_BFB_r8029_flags_gfortran_test #590590false59010069SUCCESS1791308898372http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreplyfalseStarted by an SCM change00011369481359550.9919638963859104ff5df702bc2ad372325353ee19dde5a2fc3fc104ff5df702bc2ad372325353ee19dde5a2fc3fc1refs/remotes/origin/master04ff5df702bc2ad372325353ee19dde5a2fc3fc104ff5df702bc2ad372325353ee19dde5a2fc3fc1refs/remotes/origin/master04ff5df702bc2ad372325353ee19dde5a2fc3fc104ff5df702bc2ad372325353ee19dde5a2fc3fc1refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#59113694899030clubb_BFB_r8029_flags_gfortran_test #591591false59110121SUCCESS1791361630943http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/591/clubb_jax/src/clubb_case_initalization.pyclubb_jax/src/clubb_standalone.pyclubb_jax/src/CLUBB_core/parameters_tunable.pyclubb_jax/src/Input_fields/namelist.pytests/pytests/auto_llm_generated_pytests/test_scm_jax_driver_test.pyclubb_jax/pytests/auto_llm_generated_pytests/test_driver_test_frontend.pyclubb_jax/run_jax.pytests/run_jax_comparison_mutation_test.pyLLM_prompts/jenkins_workflow.mdclubb_jax/tests/run_driver_extensions_test.pyrun_scripts/run_scm.pyclubb_jax/pytests/auto_llm_generated_pytests/test_driver_lifecycle.pyclubb_jax/pytests/auto_llm_generated_pytests/test_driver_error_window.pyjenkins_tests/clubb_driver/Jenkinsfileclubb_jax/src/advance_clubb_to_end.pyclubb_jax/README.mdclubb_jax/src/clubb_driver_test.pyLLM_prompts/pytest_workflow.md56e1502fbdd1be881a4c3ae1a2a9570dfc8615ab1791322777000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comSupport reusable JAX driver initialization and runtime batches (#1380) This is just getting the jax driver to be more in line with fortran. It was lacking features like being able to start/stop at a certain timestep. Certain driver tests were also missing, which got added and included in the driver jenkins test. * Support reusable JAX driver state and runtime batches * Keep JAX lifecycle coverage with native driver tests and document its origins * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading 2026-10-06 16:39:37 -050056e1502fbdd1be881a4c3ae1a2a9570dfc8615abSupport reusable JAX driver initialization and runtime batches (#1380)editLLM_prompts/pytest_workflow.mdeditclubb_jax/run_jax.pyeditclubb_jax/src/Input_fields/namelist.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_driver_test_frontend.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_driver_lifecycle.pyeditclubb_jax/src/clubb_standalone.pyeditrun_scripts/run_scm.pyeditjenkins_tests/clubb_driver/JenkinsfileeditLLM_prompts/jenkins_workflow.mdeditclubb_jax/README.mdeditclubb_jax/src/advance_clubb_to_end.pyeditclubb_jax/src/clubb_case_initalization.pyaddclubb_jax/tests/run_driver_extensions_test.pyaddtests/pytests/auto_llm_generated_pytests/test_scm_jax_driver_test.pyedittests/run_jax_comparison_mutation_test.pyeditclubb_jax/src/CLUBB_core/parameters_tunable.pyaddclubb_jax/src/clubb_driver_test.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_driver_error_window.pytests/README.mdclubb_jax/src/clubb_case_initalization.pyclubb_jax/pytests/auto_llm_generated_pytests/test_restart.pytests/pytests/auto_llm_generated_pytests/test_run_restart_test.pyclubb_jax/pytests/auto_llm_generated_pytests/test_unsupported_config_guards.pyclubb_jax/src/Input_fields/input_fields.pyclubb_jax/README.mdclubb_jax/pytests/auto_llm_generated_pytests/test_restart_input_validation.pyjenkins_tests/clubb_restart/Jenkinsfiletests/run_restart_test.pyclubb_jax/RESTART_PORT_NOTES.md7666fd0f4e1bf2c8c46194dcbaa31fedf8f3c8241791325897000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPort JAX restart initialization and test normal and SILHS continuation (#1381) This makes jax restarts work. Also adding jax restart test stages in the existing jenkins restart test. * Port JAX restart initialization and exercise native and SILHS restarts * Describe restart validation and dependencies for the focused PR * Describe JAX restart scenarios and their native source equivalents * Keep JAX restart validation in the shared harness and exercise distinct columns 2026-10-06 17:31:37 -05007666fd0f4e1bf2c8c46194dcbaa31fedf8f3c824Port JAX restart initialization and test normal and SILHS continuation (#1381)addclubb_jax/pytests/auto_llm_generated_pytests/test_restart.pyaddclubb_jax/src/Input_fields/input_fields.pyeditjenkins_tests/clubb_restart/Jenkinsfileedittests/README.mdeditclubb_jax/src/clubb_case_initalization.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_restart_input_validation.pyaddtests/pytests/auto_llm_generated_pytests/test_run_restart_test.pyeditclubb_jax/README.mdaddclubb_jax/RESTART_PORT_NOTES.mdeditclubb_jax/pytests/auto_llm_generated_pytests/test_unsupported_config_guards.pyedittests/run_restart_test.pyclubb_python_api/tests/clubb_loss_driver_test.pyclubb_python_api/README.mdclubb_jax/run_jax.pytuner/clubb_loss_driver.pytests/README.mdclubb_python_api/pytests/auto_llm_generated_pytests/test_loss_frontend.pyrun_scripts/run_scm_loss.pytuner/pytests/auto_llm_generated_pytests/test_case_window_overrides.pyclubb_jax/tests/test_loss_driver.pyclubb_jax/src/clubb_standalone_loss.pyclubb_jax/pytests/auto_llm_generated_pytests/test_loss_port_structure.pyclubb_python_api/clubb_python/clubb_standalone_loss.pyclubb_python_api/CMakeLists.txttuner/clubb_loss_driver_test.pyutilities/README.mdjenkins_tests/clubb_stats_output_consistency/Jenkinsfileutilities/loss_metrics.pyclubb_jax/src/clubb_loss_driver.pyclubb_jax/TUNER_PORT.mdutilities/pytests/auto_llm_generated_pytests/test_loss_cli.pytests/pytests/auto_llm_generated_pytests/test_run_loss_output_consistency.pyclubb_jax/tests/test_silhs_loss_driver.pyclubb_jax/pytests/auto_llm_generated_pytests/test_loss_driver.pytuner/README.mdclubb_jax/README.mdtuner/case_defaults.pytests/run_loss_output_consistency.py04ff5df702bc2ad372325353ee19dde5a2fc3fc11791344832000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPort standalone JAX loss evaluation and consistency checks (#1382) This adds the capability for the jax to run and compute loss vs les data the same as fortran does. Fortran uses the "loss driver" which does this, and has some additional testing code and a clubb_standalone_loss program that supports that, so this was basically just porting more of the high level fortran code to jax and hooking it up with some of the high level python scripts the tuner uses. * Support reusable JAX driver state and runtime batches * Add standalone JAX loss evaluation and consistency coverage * Keep standalone loss CLI coverage separate from tuning * Remove trailing whitespace from extracted loss CLI tests * Run JAX loss help checks in the JAX pytest suite * Keep JAX lifecycle coverage with native driver tests and document its origins * Document loss test scenarios, native counterparts and JAX extensions * Keep the native loss executable path intact in the test description * Mirror the native driver lifecycle test and compare complete JAX statistics * Run JAX driver extensions as an independent step in the lifecycle stage * Update the C8 comparison mutation for indexed parameter loading * Reject unsupported loss restarts before opening model resources * Clean up merged loss launcher state and document early restart rejection * Move loss frontends and tests out of the tuner package Call the existing Fortran Python API directly from its installed standalone loss frontend, and keep the JAX standalone frontend with its source port. Share unchanged table formatting, relocate lifecycle and CLI coverage, and update runners and documentation. 2026-10-06 22:47:12 -050004ff5df702bc2ad372325353ee19dde5a2fc3fc1Port standalone JAX loss evaluation and consistency checks (#1382)addtuner/pytests/auto_llm_generated_pytests/test_case_window_overrides.pyeditclubb_jax/run_jax.pyaddclubb_jax/tests/test_loss_driver.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_loss_driver.pyaddclubb_jax/src/clubb_loss_driver.pyedittuner/case_defaults.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_loss_port_structure.pyeditjenkins_tests/clubb_stats_output_consistency/Jenkinsfileeditclubb_python_api/README.mddeletetuner/clubb_loss_driver.pyaddclubb_jax/TUNER_PORT.mdaddclubb_python_api/clubb_python/clubb_standalone_loss.pyedittuner/README.mdaddtests/pytests/auto_llm_generated_pytests/test_run_loss_output_consistency.pydeletetuner/clubb_loss_driver_test.pyaddclubb_jax/tests/test_silhs_loss_driver.pyeditclubb_jax/README.mdaddclubb_python_api/pytests/auto_llm_generated_pytests/test_loss_frontend.pyaddutilities/pytests/auto_llm_generated_pytests/test_loss_cli.pyaddclubb_python_api/tests/clubb_loss_driver_test.pyeditrun_scripts/run_scm_loss.pyeditutilities/README.mdaddclubb_jax/src/clubb_standalone_loss.pyeditclubb_python_api/CMakeLists.txtedittests/run_loss_output_consistency.pyeditutilities/loss_metrics.pyedittests/README.mdgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse592http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/592/590http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/590/Started by user Gunther HueblerhueblerGunther Huebler589350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/master350a98e42b5a193c8471cc67c288bce95e7f7ac0350a98e42b5a193c8471cc67c288bce95e7f7ac0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#58978790299030clubb_BFB_r8029_flags_gfortran_test #589589false58910037FAILURE1791306240225http://carson.math.uwm.edu/jenkins/job/clubb_BFB_r8029_flags_gfortran_test/589/utilities/convert_acc_to_omp.bashe83e7d62179dd6c710b77216aea55df37600f8201791236009000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFix OpenMP GPU host_data conversion 2026-10-05 16:33:29 -0500e83e7d62179dd6c710b77216aea55df37600f820Fix OpenMP GPU host_data conversioneditutilities/convert_acc_to_omp.bashclubb_jax/backends/cpu.pyclubb_jax/pytests/auto_llm_generated_pytests/test_backends.pyclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pytests/pytests/auto_llm_generated_pytests/test_compile_compiler_selection.pyclubb_jax/pytests/auto_llm_generated_pytests/test_rocm_runtime.pyBUILD.mdclubb_jax/backends/metal.pyclubb_jax/run_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_portable_cholesky.pyclubb_jax/backends/__init__.pyclubb_jax/backends/rocm.pyclubb_jax/backends/cuda.pyclubb_jax/src/CLUBB_core/matrix_operations.pyclubb_jax/README.mdclubb_jax/requirements-rocm.txtclubb_jax/backends/common.pytests/run_jax_vs_fortran_cases.pycompile.pyclubb_jax/pytests/auto_llm_generated_pytests/test_runtime_info.pyclubb_jax/runtime_info.pyda614f85c180af844a77e80ddd4b61a94ce716b91791238822000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAMD/ROCM Support for Jax (#1376) This does 2 things: adds support for running on ROCM systems, this is the AMD GPU equivalent of cuda organize specific-device backend setup files, e.g GPU on nvidia needs cuda jax libraries, Apple needs metal, AMD needs rocm The only complication was the jax cholesky not working on AMD GPUs. Seems like a bug that's out of our control, so I left en environment flag to switch between the jax linalg call and a custom "portable" one. The portable one still passes the jax_vs_fortran comparison tests. Commits --- * Support native AMD ROCm JAX on CachyOS * Keep ROCm crash fixes and remove Morrison rounding workarounds * Separate JAX launcher and inspection backend policies 2026-10-05 17:20:22 -0500da614f85c180af844a77e80ddd4b61a94ce716b9AMD/ROCM Support for Jax (#1376)addclubb_jax/pytests/auto_llm_generated_pytests/test_backends.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_portable_cholesky.pyaddclubb_jax/pytests/auto_llm_generated_pytests/test_rocm_runtime.pyeditclubb_jax/runtime_info.pyeditclubb_jax/src/CLUBB_core/matrix_operations.pyaddclubb_jax/backends/metal.pyaddclubb_jax/backends/__init__.pyeditBUILD.mdedittests/run_jax_vs_fortran_cases.pyaddclubb_jax/backends/cpu.pyaddtests/pytests/auto_llm_generated_pytests/test_compile_compiler_selection.pyeditclubb_jax/README.mdeditclubb_jax/run_jax.pyeditcompile.pyaddclubb_jax/backends/common.pyaddclubb_jax/backends/rocm.pyeditclubb_jax/pytests/auto_llm_generated_pytests/test_jax_cli_options.pyaddclubb_jax/requirements-rocm.txteditclubb_jax/pytests/auto_llm_generated_pytests/test_runtime_info.pyaddclubb_jax/backends/cuda.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compute_sigma_sqd_w.pyclubb_jax/pytests/auto_llm_generated_pytests/test_component_corr_ip.pyclubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_correlations.pyclubb_jax/pytests/auto_llm_generated_pytests/test_limits_f_x_responder.pyclubb_jax/pytests/auto_llm_generated_pytests/test_kk_autoconversion.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compute_uv_tndcy.pyclubb_jax/pytests/auto_llm_generated_pytests/test_trivar_NNL_covar_eq.pyclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_binormal_moments.pyclubb_jax/pytests/auto_llm_generated_pytests/test_Nc_Ncn_eqns.pyclubb_jax/pytests/auto_llm_generated_pytests/test_radiation_port_structure.pyclubb_jax/pytests/auto_llm_generated_pytests/test_liq_water_path.pyclubb_jax/pytests/auto_llm_generated_pytests/test_jit_compile.pyclubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad.pyclubb_jax/pytests/auto_llm_generated_pytests/test_sunray_sw.pyclubb_jax/pytests/auto_llm_generated_pytests/test_comp_corr_norm.pyclubb_jax/pytests/auto_llm_generated_pytests/test_windm_edsclrm_rhs.pyclubb_jax/pytests/auto_llm_generated_pytests/test_remapping_ppm.pyclubb_jax/pytests/auto_llm_generated_pytests/test_simple_rad_lba.pyclubb_jax/tests/run_morrison_interface_test.pyclubb_jax/pytests/auto_llm_generated_pytests/test_ice_dfsn.pyclubb_jax/pytests/auto_llm_generated_pytests/test_clip_variance.pyclubb_jax/pytests/auto_llm_generated_pytests/test_adg1_adg2_responder_params.pyclubb_jax/pytests/auto_llm_generated_pytests/test_calc_ice_cloud_frac_component.pyclubb_jax/pytests/auto_llm_generated_pytests/test_sfc_varnce.pyclubb_jax/pytests/auto_llm_generated_pytests/test_rad_extended_atmosphere.pyclubb_jax/pytests/auto_llm_generated_pytests/test_compute_rtp2_from_chi.pyclubb_jax/pytests/auto_llm_generated_pytests/test_KK_Nrm_tendencies.pyclubb_jax/pytests/auto_llm_generated_pytests/test_max_cubic_root.pyclubb_jax/pytests/auto_llm_generated_pytests/test_param_names.pyclubb_jax/pytests/auto_llm_generated_pytests/test_pvertinterp.pyclubb_jax/pytests/auto_llm_generated_pytests/test_no_dead_functions.pyclubb_jax/pytests/auto_llm_generated_pytests/test_silhs_port_structure.pyclubb_jax/pytests/auto_llm_generated_pytests/test_denorm_transform_corr.pyclubb_jax/pytests/auto_llm_generated_pytests/test_microphysics_integration.pyclubb_jax/pytests/auto_llm_generated_pytests/test_pdf_params_pack_roundtrip.pyclubb_jax/pytests/auto_llm_generated_pytests/test_NNL_covar_const_vs_MM.pyclubb_jax/pytests/auto_llm_generated_pytests/test_clip_skewness.pyclubb_jax/pytests/auto_llm_generated_pytests/test_interpolation.pyclubb_jax/pytests/auto_llm_generated_pytests/test_xp2_xpyp_terms.pyclubb_jax/pytests/auto_llm_generated_pytests/test_constants.pyclubb_jax/pytests/auto_llm_generated_pytests/test_penta_faithful.pyclubb_jax/pytests/auto_llm_generated_pytests/test_mpace_b_lba_tndcy.pyclubb_jax/pytests/auto_llm_generated_pytests/test_T_in_K.pyclubb_jax/pytests/auto_llm_generated_pytests/test_config_flags_complete.pyclubb_jax/pytests/auto_llm_generated_pytests/test_update_xp2_mc.pyclubb_jax/README.mdclubb_jax/pytests/auto_llm_generated_pytests/test_calculate_w_responder_params.pyclubb_jax/pytests/auto_llm_generated_pytests/test_setter_var_params.pyclubb_jax/pytests/auto_llm_generated_pytests/test_diagnose_upxp.pyclubb_jax/pytests/auto_llm_generated_pytests/test_rcm_sat_adj.pyclubb_jax/pytests/auto_llm_generated_pytests/test_no_dead_imports.pyclubb_jax/pytests/auto_llm_generated_pytests/test_bivar_LL_covar_partial.pyclubb_jax/pytests/auto_llm_generated_pytests/test_mixed_moment_pdf_integrals.pyclubb_jax/pytests/auto_llm_generated_pytests/test_hydrometp2_zt.pyclubb_jax/pytests/auto_llm_generated_pytests/test_calc_wp3_on_wp2.pyclubb_jax/pytests/auto_llm_generated_pytests/test_sponge_damp_xp23.pyclubb_jax/pytests/auto_llm_generated_pytests/test_inverse_hydrostatic.pyclubb_jax/pytests/auto_llm_generated_pytests/test_diagnostic_cache.pyclubb_jax/pytests/auto_llm_generated_pytests/test_standalone_jax.pyclubb_jax/pytests/auto_llm_generated_pytests/test_kk_local_means.pyclubb_jax/pytests/auto_llm_generated_pytests/test_calc_roots.pyclubb_jax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inherited JAX pytests and remove binding dependencies (#1379) This just prunes lots of outdated and unneccesary pytests. These are all LLM generated and I just never went through them before. Probably still needs cleanup. 2026-10-05 18:50:16 -0500350a98e42b5a193c8471cc67c288bce95e7f7ac0Prune inherited JAX pytests and remove binding dependencies 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