Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl,
netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config
--config directory does not exist: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test/compatible_r8029
create_case_namelist failed (exit 1). Command was:
/usr/bin/python /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test/run_scripts/../utilities/create_case_namelist.py -out_dir /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test/output -config compatible_r8029 bomex
--config directory does not exist: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test/compatible_r8029
create_case_namelist failed (exit 1). Command was:
/usr/bin/python /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test/run_scripts/../utilities/create_case_namelist.py -out_dir /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test/output -config compatible_r8029 dycoms2_rf01
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: none
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\npython run_scripts/run_scm.py -config compatible_r8029 bomex', '\npython run_scripts/run_scm.py -config compatible_r8029 dycoms2_rf01']
Diffing command: python3 run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 95d5d12aef49035170773f0714a97f4109bcccdd
Checking Commit: 95d5d12aef49035170773f0714a97f4109bcccdd
Running: final commit to check, not labelled BIT_CHANGING
Checking out 95d5d12aef49035170773f0714a97f4109bcccdd
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm.py -config compatible_r8029 bomex'
Running: 'python run_scripts/run_scm.py -config compatible_r8029 dycoms2_rf01'
Checking out 31446891daef22d1f1ac63262df21583933565b9
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'python run_scripts/run_scm.py -config compatible_r8029 bomex'
Running: 'python run_scripts/run_scm.py -config compatible_r8029 dycoms2_rf01'
================== WARNING ==================
Commit: 31446891daef22d1f1ac63262df21583933565b9
There was a problem copying the output.
Did the run complete?
Is the output path correct? output
The run will continue, and this commit will be
considered unresolved.
===========================================
ISSUE WITH COMMIT DETECTED: 95d5d12aef49035170773f0714a97f4109bcccdd differs from 31446891daef22d1f1ac63262df21583933565b9
Finding all BIT_CHANGING commits in range: 31446891daef22d1f1ac63262df21583933565b9...95d5d12aef49035170773f0714a97f4109bcccdd
Output from 95d5d12aef49035170773f0714a97f4109bcccdd already saved
Commit 31446891daef22d1f1ac63262df21583933565b9 already failed. Will not run again
Found:
95d5d12aef49035170773f0714a97f4109bcccdd
=============================== Test Results ===============================
Commit Range Checked = 31446891daef22d1f1ac63262df21583933565b9...95d5d12aef49035170773f0714a97f4109bcccdd
New Unresolved Commits:
95d5d12aef49035170773f0714a97f4109bcccdd
No fake BIT_CHANGING commits found.
Remaining Unresolved Commits (oldest commit is listed first):
95d5d12aef49035170773f0714a97f4109bcccdd
=============================== Updating Config File ===============================
Saving into UnresolvedCommits: 95d5d12aef49035170773f0714a97f4109bcccdd
Saving into BaselineCommit: 95d5d12aef49035170773f0714a97f4109bcccdd
=============================== Cleanup ===============================
Removing all generated output
REMOVING: 95d5d12aef49035170773f0714a97f4109bcccdd
================== Unresolved Commit Status ==================
Remaining Unresolved Commits (oldest commit is listed first):
95d5d12aef49035170773f0714a97f4109bcccdd
================== FAILED Commits ==================
These are the commits which entirely failed to produce output:
31446891daef22d1f1ac63262df21583933565b9
Exiting with code: 1
