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+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config
Directory 1 is 5e3cfdd6efddf098dbddb41a5848e3ef4189aac8
Directory 2 is f146255f50732c445ccbd012ca45888a9ce44d0b
Using reporting threshold:  0.0 


The following cases will be compared: ['bomex', 'dycoms2_rf01']


================================================ bomex ================================================
>The linux diff detected differences in bomex_stats.nc<
>>Differences above threshold were detected in the common fields in file bomex_stats.nc<<
>>>Differences in common variables detected for case bomex<<<

=====================================================================================================

================================================ dycoms2_rf01 ================================================
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<

=====================================================================================================

SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 1 cases ['dycoms2_rf01']
Fail: 1 cases ['bomex']

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test

Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin https://github.com/larson-group/clubb.git

Output Save Mode: none

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\ncp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters', '\npython run_scripts/run_scm.py bomex', '\npython run_scripts/run_scm.py dycoms2_rf01']

Diffing command: python3 run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 5e3cfdd6efddf098dbddb41a5848e3ef4189aac8
	Found: BIT_CHANGING
	Found: RESOLVED:643d128a5613019595aecd643f1028e937ad4b76
	Found: RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b

Checking Commit: 5e3cfdd6efddf098dbddb41a5848e3ef4189aac8
	Checking out 5e3cfdd6efddf098dbddb41a5848e3ef4189aac8
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
	Running: 'python run_scripts/run_scm.py bomex'
	Running: 'python run_scripts/run_scm.py dycoms2_rf01'
	Checking out f146255f50732c445ccbd012ca45888a9ce44d0b
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
	Running: 'python run_scripts/run_scm.py bomex'
	Running: 'python run_scripts/run_scm.py dycoms2_rf01'
	Diffing: 'python3 run_scripts/run_bindiff_all.py 5e3cfdd6efddf098dbddb41a5848e3ef4189aac8 f146255f50732c445ccbd012ca45888a9ce44d0b'
	Commit '5e3cfdd6efddf098dbddb41a5848e3ef4189aac8' is BIT_CHANGING and properly labelled as such.

=============================== Test Results ===============================

Commit Range Checked = f146255f50732c445ccbd012ca45888a9ce44d0b...5e3cfdd6efddf098dbddb41a5848e3ef4189aac8

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

WARNING: 643d128a5613019595aecd643f1028e937ad4b76 labelled as RESOLVED,
	 but was not listed as unresolved.

WARNING: f146255f50732c445ccbd012ca45888a9ce44d0b labelled as RESOLVED,
	 but was not listed as unresolved.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: 5e3cfdd6efddf098dbddb41a5848e3ef4189aac8

=============================== Cleanup ===============================

Removing all generated output
	REMOVING: f146255f50732c445ccbd012ca45888a9ce44d0b
	REMOVING: 5e3cfdd6efddf098dbddb41a5848e3ef4189aac8

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0