Started by user <a href='/jenkins/user/huebler' class='jenkins-table__link model-link model-link--float'>Gunther Huebler</a>
Obtained jenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfile from git <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
<span class="pipeline-new-node" nodeId="2" startId="2">[Pipeline] Start of Pipeline
</span><span class="pipeline-new-node" nodeId="3" startId="3" enclosingId="2">[Pipeline] node
</span><span class="pipeline-node-3">Running on <a href='/jenkins/computer/mitch/' class='jenkins-table__link model-link model-link--float'>mitch</a> in /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
</span><span class="pipeline-new-node" nodeId="4" startId="4" enclosingId="3">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="5" startId="5" enclosingId="4">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="6" startId="6" enclosingId="5" label="Declarative: Checkout SCM">[Pipeline] { (Declarative: Checkout SCM)
</span><span class="pipeline-new-node" nodeId="7" enclosingId="6">[Pipeline] checkout
</span><span class="pipeline-node-7">The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git init /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test # timeout=10
Fetching upstream changes from <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.34.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision abccbb5bc06909c50b6645028674a3461f0bf0ab (refs/remotes/origin/master)
Commit message: "Fixing python api and python/jax driver. Also fixing bug that caused non-BFBness in stats outputs (only upwp_cl/vpwp_cl) when using l_predict_upwp_vpwp=.false., and adding ulimit -s 8388608 to fix GPU test (though it's unclear why exactly we need this all of a sudden for this test). RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b"
 &gt; git config remote.origin.url <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f abccbb5bc06909c50b6645028674a3461f0bf0ab # timeout=10
 &gt; git rev-list --no-walk f146255f50732c445ccbd012ca45888a9ce44d0b # timeout=10
</span><span class="pipeline-new-node" nodeId="8" startId="6">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="9" startId="5">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="10" startId="10" enclosingId="4">[Pipeline] withEnv
</span><span class="pipeline-new-node" nodeId="11" startId="11" enclosingId="10">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="12" startId="12" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="13" startId="13" enclosingId="12" label="Update sys_admin Repo">[Pipeline] { (Update sys_admin Repo)
</span><span class="pipeline-new-node" nodeId="14" enclosingId="13">[Pipeline] sh
</span><span class="pipeline-node-14">+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
</span><span class="pipeline-new-node" nodeId="15" startId="13">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="16" startId="12">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="17" startId="17" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="18" startId="18" enclosingId="17" label="Run Python Test">[Pipeline] { (Run Python Test)
</span><span class="pipeline-new-node" nodeId="19" enclosingId="18">[Pipeline] sh
</span><span class="pipeline-node-19">+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl,
netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config
Directory 1 is abccbb5bc06909c50b6645028674a3461f0bf0ab
Directory 2 is f146255f50732c445ccbd012ca45888a9ce44d0b
Using reporting threshold:  0.0 


The following cases will be compared: ['bomex', 'dycoms2_rf01']


================================================ bomex ================================================
&gt;The linux diff detected differences in bomex_stats.nc&lt;
&gt;&gt;Differences above threshold were detected in the common fields in file bomex_stats.nc&lt;&lt;
&gt;&gt;&gt;Differences in common variables detected for case bomex&lt;&lt;&lt;

=====================================================================================================

================================================ dycoms2_rf01 ================================================
&gt;No differences detected by the linux diff in dycoms2_rf01_stats.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.&lt;&lt;&lt;

=====================================================================================================

SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 1 cases ['dycoms2_rf01']
Fail: 1 cases ['bomex']
Directory 1 is abccbb5bc06909c50b6645028674a3461f0bf0ab
Directory 2 is f146255f50732c445ccbd012ca45888a9ce44d0b
Using reporting threshold:  0.0 


The following cases will be compared: ['bomex', 'dycoms2_rf01']


================================================ bomex ================================================
&gt;The linux diff detected differences in bomex_stats.nc&lt;
&gt;&gt;Differences above threshold were detected in the common fields in file bomex_stats.nc&lt;&lt;
&gt;&gt;&gt;Differences in common variables detected for case bomex&lt;&lt;&lt;

=====================================================================================================

================================================ dycoms2_rf01 ================================================
&gt;No differences detected by the linux diff in dycoms2_rf01_stats.nc&lt;
&gt;&gt;&gt;The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.&lt;&lt;&lt;

=====================================================================================================

SUMMARY:
There were differences detected in the common variables in netCDF (*.nc) files.
Pass: 1 cases ['dycoms2_rf01']
Fail: 1 cases ['bomex']

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test

Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin <a href='https://github.com/larson-group/clubb.git'>https://github.com/larson-group/clubb.git</a>

Output Save Mode: none

Using branch: master

Making list from 'UnresolvedCommits':
	- 643d128a5613019595aecd643f1028e937ad4b76

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\ncp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters', '\npython run_scripts/run_scm.py bomex', '\npython run_scripts/run_scm.py dycoms2_rf01']

Diffing command: python3 run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: abccbb5bc06909c50b6645028674a3461f0bf0ab
	Found: RESOLVED:643d128a5613019595aecd643f1028e937ad4b76
	Found: RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b

Checking Commit: abccbb5bc06909c50b6645028674a3461f0bf0ab
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out abccbb5bc06909c50b6645028674a3461f0bf0ab
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
	Running: 'python run_scripts/run_scm.py bomex'
	Running: 'python run_scripts/run_scm.py dycoms2_rf01'
	Checking out f146255f50732c445ccbd012ca45888a9ce44d0b
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters'
	Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters'
	Running: 'python run_scripts/run_scm.py bomex'
	Running: 'python run_scripts/run_scm.py dycoms2_rf01'
	Diffing: 'python3 run_scripts/run_bindiff_all.py abccbb5bc06909c50b6645028674a3461f0bf0ab f146255f50732c445ccbd012ca45888a9ce44d0b'
	ISSUE WITH COMMIT DETECTED: abccbb5bc06909c50b6645028674a3461f0bf0ab differs from f146255f50732c445ccbd012ca45888a9ce44d0b

Finding all BIT_CHANGING commits in range: f146255f50732c445ccbd012ca45888a9ce44d0b...abccbb5bc06909c50b6645028674a3461f0bf0ab
	Output from abccbb5bc06909c50b6645028674a3461f0bf0ab already saved
	Output from f146255f50732c445ccbd012ca45888a9ce44d0b already saved
	Diffing: 'python3 run_scripts/run_bindiff_all.py abccbb5bc06909c50b6645028674a3461f0bf0ab f146255f50732c445ccbd012ca45888a9ce44d0b'
	Found:
		abccbb5bc06909c50b6645028674a3461f0bf0ab

=============================== Test Results ===============================

Commit Range Checked = f146255f50732c445ccbd012ca45888a9ce44d0b...abccbb5bc06909c50b6645028674a3461f0bf0ab

New Unresolved Commits:
	abccbb5bc06909c50b6645028674a3461f0bf0ab

No fake BIT_CHANGING commits found.

Resolved: 643d128a5613019595aecd643f1028e937ad4b76

WARNING: f146255f50732c445ccbd012ca45888a9ce44d0b labelled as RESOLVED,
	 but was not listed as unresolved.

Remaining Unresolved Commits (oldest commit is listed first):
	abccbb5bc06909c50b6645028674a3461f0bf0ab

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: abccbb5bc06909c50b6645028674a3461f0bf0ab


Saving into BaselineCommit: abccbb5bc06909c50b6645028674a3461f0bf0ab

=============================== Cleanup ===============================

Removing all generated output
	REMOVING: f146255f50732c445ccbd012ca45888a9ce44d0b
	REMOVING: abccbb5bc06909c50b6645028674a3461f0bf0ab

================== Unresolved Commit Status ==================

Remaining Unresolved Commits (oldest commit is listed first):
	abccbb5bc06909c50b6645028674a3461f0bf0ab

Exiting with code: 1
</span><span class="pipeline-new-node" nodeId="20" startId="18">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="21" startId="17">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="22" startId="22" enclosingId="11">[Pipeline] stage
</span><span class="pipeline-new-node" nodeId="23" startId="23" enclosingId="22" label="Declarative: Post Actions">[Pipeline] { (Declarative: Post Actions)
</span><span class="pipeline-new-node" nodeId="24" startId="24" enclosingId="23">[Pipeline] script
</span><span class="pipeline-new-node" nodeId="25" startId="25" enclosingId="24">[Pipeline] {
</span><span class="pipeline-new-node" nodeId="26" enclosingId="25">[Pipeline] emailext
</span><span class="pipeline-node-26">Sending email to: messnermet@uwm.edu
</span><span class="pipeline-new-node" nodeId="27" startId="25">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="28" startId="24">[Pipeline] // script
</span><span class="pipeline-new-node" nodeId="29" startId="23">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="30" startId="22">[Pipeline] // stage
</span><span class="pipeline-new-node" nodeId="31" startId="11">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="32" startId="10">[Pipeline] // withEnv
</span><span class="pipeline-new-node" nodeId="33" startId="4">[Pipeline] }
</span><span class="pipeline-new-node" nodeId="34" startId="3">[Pipeline] // node
</span><span class="pipeline-new-node" nodeId="35" startId="2">[Pipeline] End of Pipeline
</span>ERROR: script returned exit code 1
Finished: FAILURE