Started by an SCM change Obtained jenkins_tests/clubb_BFB_r8029_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task ‘condella’ is offline ‘malan’ is offline ‘overlie’ is offline Running on Jenkins in /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision f146255f50732c445ccbd012ca45888a9ce44d0b (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f f146255f50732c445ccbd012ca45888a9ce44d0b # timeout=10 Commit message: "Cmake netcdf fallback (#1294)" > git rev-list --no-walk 2bac827cd3b91b3437ca62918583938237c9fd03 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_r8029_flags_gfortran_test_config Directory 1 is f146255f50732c445ccbd012ca45888a9ce44d0b Directory 2 is 2bac827cd3b91b3437ca62918583938237c9fd03 Using reporting threshold: 0.0 The following cases will be compared: ['bomex', 'dycoms2_rf01'] ================================================ bomex ================================================ >The linux diff detected differences in bomex_stats.nc< >>Differences above threshold were detected in the common fields in file bomex_stats.nc<< >>>Differences in common variables detected for case bomex<<< ===================================================================================================== ================================================ dycoms2_rf01 ================================================ >No differences detected by the linux diff in dycoms2_rf01_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ===================================================================================================== SUMMARY: There were differences detected in the common variables in netCDF (*.nc) files. Pass: 1 cases ['dycoms2_rf01'] Fail: 1 cases ['bomex'] Directory 1 is 643d128a5613019595aecd643f1028e937ad4b76 Directory 2 is 2bac827cd3b91b3437ca62918583938237c9fd03 Using reporting threshold: 0.0 The following cases will be compared: ['bomex', 'dycoms2_rf01'] ================================================ bomex ================================================ >The linux diff detected differences in bomex_stats.nc< >>Differences above threshold were detected in the common fields in file bomex_stats.nc<< >>>Differences in common variables detected for case bomex<<< ===================================================================================================== ================================================ dycoms2_rf01 ================================================ >No differences detected by the linux diff in dycoms2_rf01_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ===================================================================================================== SUMMARY: There were differences detected in the common variables in netCDF (*.nc) files. Pass: 1 cases ['dycoms2_rf01'] Fail: 1 cases ['bomex'] Directory 1 is f146255f50732c445ccbd012ca45888a9ce44d0b Directory 2 is 643d128a5613019595aecd643f1028e937ad4b76 Using reporting threshold: 0.0 The following cases will be compared: ['bomex', 'dycoms2_rf01'] ================================================ bomex ================================================ >No differences detected by the linux diff in bomex_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case bomex.<<< ===================================================================================================== ================================================ dycoms2_rf01 ================================================ >No differences detected by the linux diff in dycoms2_rf01_stats.nc< >>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<< ===================================================================================================== SUMMARY: Linux diff did not detect any differences in the compared files. Pass: 2 cases ['bomex', 'dycoms2_rf01'] Fail: 0 cases [] =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test Using /home/jenkins/workspace/clubb_BFB_r8029_flags_gfortran_test with origin https://github.com/larson-group/clubb.git Output Save Mode: none Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['python compile.py -debug', '\nrm -rf output', 'mkdir output', '\ncp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters', '\ncp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters', '\npython run_scripts/run_scm.py bomex', '\npython run_scripts/run_scm.py dycoms2_rf01'] Diffing command: python3 run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 643d128a5613019595aecd643f1028e937ad4b76 Parsing message from commit: f146255f50732c445ccbd012ca45888a9ce44d0b Checking Commit: 643d128a5613019595aecd643f1028e937ad4b76 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: f146255f50732c445ccbd012ca45888a9ce44d0b Running: final commit to check, not labelled BIT_CHANGING Checking out f146255f50732c445ccbd012ca45888a9ce44d0b Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters' Running: 'python run_scripts/run_scm.py bomex' Running: 'python run_scripts/run_scm.py dycoms2_rf01' Checking out 2bac827cd3b91b3437ca62918583938237c9fd03 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters' Running: 'python run_scripts/run_scm.py bomex' Running: 'python run_scripts/run_scm.py dycoms2_rf01' Diffing: 'python3 run_scripts/run_bindiff_all.py f146255f50732c445ccbd012ca45888a9ce44d0b 2bac827cd3b91b3437ca62918583938237c9fd03' ISSUE WITH COMMIT DETECTED: f146255f50732c445ccbd012ca45888a9ce44d0b differs from 2bac827cd3b91b3437ca62918583938237c9fd03 Finding all BIT_CHANGING commits in range: 2bac827cd3b91b3437ca62918583938237c9fd03...f146255f50732c445ccbd012ca45888a9ce44d0b Checking out 643d128a5613019595aecd643f1028e937ad4b76 Running: 'python compile.py -debug' Running: 'rm -rf output' Running: 'mkdir output' Running: 'cp input/tunable_parameters_compatible_r8029/configurable_model_flags.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/silhs_parameters.in input/tunable_parameters' Running: 'cp input/tunable_parameters_compatible_r8029/tunable_parameters.in input/tunable_parameters' Running: 'python run_scripts/run_scm.py bomex' Running: 'python run_scripts/run_scm.py dycoms2_rf01' Output from 2bac827cd3b91b3437ca62918583938237c9fd03 already saved Diffing: 'python3 run_scripts/run_bindiff_all.py 643d128a5613019595aecd643f1028e937ad4b76 2bac827cd3b91b3437ca62918583938237c9fd03' Output from f146255f50732c445ccbd012ca45888a9ce44d0b already saved Output from 643d128a5613019595aecd643f1028e937ad4b76 already saved Diffing: 'python3 run_scripts/run_bindiff_all.py f146255f50732c445ccbd012ca45888a9ce44d0b 643d128a5613019595aecd643f1028e937ad4b76' Found: 643d128a5613019595aecd643f1028e937ad4b76 =============================== Test Results =============================== Commit Range Checked = 2bac827cd3b91b3437ca62918583938237c9fd03...f146255f50732c445ccbd012ca45888a9ce44d0b New Unresolved Commits: 643d128a5613019595aecd643f1028e937ad4b76 No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 643d128a5613019595aecd643f1028e937ad4b76 =============================== Updating Config File =============================== Saving into UnresolvedCommits: 643d128a5613019595aecd643f1028e937ad4b76 Saving into BaselineCommit: f146255f50732c445ccbd012ca45888a9ce44d0b =============================== Cleanup =============================== Removing all generated output REMOVING: 2bac827cd3b91b3437ca62918583938237c9fd03 REMOVING: 643d128a5613019595aecd643f1028e937ad4b76 REMOVING: f146255f50732c445ccbd012ca45888a9ce44d0b ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 643d128a5613019595aecd643f1028e937ad4b76 Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE