Started by an SCM change Obtained jenkins_tests/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/Jenkinsfile from git https://github.com/larson-group/clubb.git Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on Jenkins in /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --progress https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision c665567bd02143fd2060282ad5cb5dea6cdf2679 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f c665567bd02143fd2060282ad5cb5dea6cdf2679 # timeout=10 Commit message: "Updating error.F90 to include the error statement about LES field being zero as a check." > git rev-list --no-walk ea5b5707470c2d942cbb7081436ede1baedde704 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin Cloning into '/home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + python3 /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/clubb_bin_diff_regression_backwards_compatibility_gfortran_test_workspace/bit_diff_clubb_bc_r8092_config ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_gfdlact.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/parameters_tunable.F90:2518:32: 2518 | subroutine init_parameters_999( & | ^ Warning: ‘init_parameters_999’ defined but not used [-Wunused-function] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/input_reader.F90:498:28: 491 | do i=1, dim_grid | 2 ...... 498 | if ( grid(i) < grid(i-1) ) then | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript] /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/CLUBB_core/advance_clubb_core_module.F90:139:23: 139 | hydromet, & ! Unused | 1 Warning: Unused dummy argument ‘hydromet’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_param.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_lapack.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libmicrophys_utils.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_parabolic.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_KK_microphys.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_importance_sample_module.F90:638:62: 633 | do category=1, num_importance_categories | 2 ...... 638 | rand_vect(sample) < category_cumulative_probs(category+1) ) then | 1 Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_coamps.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_bugsrad.a /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../src/SILHS/silhs_api_module.F90:323:13: 323 | rho_ds_zt, & ! Unused | 1 Warning: Unused dummy argument ‘rho_ds_zt’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libsilhs.a ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_morrison.a ../src/Benchmark_cases/cloud_sed_module.F90:168:44: 168 | if ( zt2zm( gr, rcm, k) > zero .AND. zt2zm( gr, Ncm, k ) > zero ) then | 1 Warning: Impure function ‘redirect_interpolated_azmk’ at (1) might not be evaluated [-Wfunction-elimination] ../src/KK_microphys_module.F90:43:35: 43 | subroutine KK_local_microphys( gr, dt, nz, l_latin_hypercube, & ! In | 1 Warning: Unused dummy argument ‘gr’ at (1) [-Wunused-dummy-argument] ar: creating /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo/compile/../lib/libclubb_other.a ../src/G_unit_test_types/w_up_in_cloud_tests.F90:24:8: 24 | use clubb_precision, only: & | 1 Warning: Unused parameter ‘core_rknd’ which has been explicitly imported at (1) [-Wunused-parameter] CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. 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Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/c665567bd02143fd2060282ad5cb5dea6cdf2679. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/ea5b5707470c2d942cbb7081436ede1baedde704. No data was found! ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/32af4729f9ff1d374e03249b1b4d8d05fd8052d6. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/ea5b5707470c2d942cbb7081436ede1baedde704. No data was found! ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. CLUBBStandardsCheck.pl has begun. CLUBBStandardsCheck.pl has finished. Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/f983171d892eb60a4d3193f71125f280169a336f. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/32af4729f9ff1d374e03249b1b4d8d05fd8052d6. No data was found! Directory 1 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/c665567bd02143fd2060282ad5cb5dea6cdf2679. Directory 2 is /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/f983171d892eb60a4d3193f71125f280169a336f. No data was found! =============================== Configuring Test =============================== Working directory set to: . Trying to clone repo... Cloned repo location: /home/jenkins/workspace/clubb_bin_diff_regression_backwards_compatibility_gfortran_test/repo Output Save Mode: none Using branch: master Commits to test vs the baseline (ea5b5707470c2d942cbb7081436ede1baedde704) 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 Making list from 'UnresolvedCommits': - fa5559b6fd09f3da30b4d4d0255c532b3dd53607 - ea5b5707470c2d942cbb7081436ede1baedde704 Run Output Path: repo/output Run commands: ['repo/compile/compile.bash', '\nrm -rf repo/output', 'mkdir repo/output', '\ncp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters', '\ncp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters', '\nrepo/run_scripts/run_scm_all.bash --min-cases'] Diffing command: repo/run_scripts/run_bindiff_all.bash =============================== Running Test =============================== Parsing message from commit: 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 Parsing message from commit: f983171d892eb60a4d3193f71125f280169a336f Parsing message from commit: c665567bd02143fd2060282ad5cb5dea6cdf2679 Checking Commit: 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: f983171d892eb60a4d3193f71125f280169a336f Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: c665567bd02143fd2060282ad5cb5dea6cdf2679 Running: final commit to check, not labelled BIT_CHANGING Checking out c665567bd02143fd2060282ad5cb5dea6cdf2679 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm_all.bash --min-cases' Checking out ea5b5707470c2d942cbb7081436ede1baedde704 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm_all.bash --min-cases' Diffing: 'repo/run_scripts/run_bindiff_all.bash c665567bd02143fd2060282ad5cb5dea6cdf2679 ea5b5707470c2d942cbb7081436ede1baedde704'  ISSUE WITH COMMIT DETECTED: c665567bd02143fd2060282ad5cb5dea6cdf2679 differs from ea5b5707470c2d942cbb7081436ede1baedde704 Finding all BIT_CHANGING commits in range: ea5b5707470c2d942cbb7081436ede1baedde704...c665567bd02143fd2060282ad5cb5dea6cdf2679 Checking out 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm_all.bash --min-cases' Output from ea5b5707470c2d942cbb7081436ede1baedde704 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 ea5b5707470c2d942cbb7081436ede1baedde704' Checking out f983171d892eb60a4d3193f71125f280169a336f Running: 'repo/compile/compile.bash' Running: ' rm -rf repo/output' Running: 'mkdir repo/output' Running: ' cp repo/input/tunable_parameters_compatible_r8029/configurable_model_flags.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/silhs_parameters.in repo/input/tunable_parameters' Running: ' cp repo/input/tunable_parameters_compatible_r8029/tunable_parameters.in repo/input/tunable_parameters' Running: ' repo/run_scripts/run_scm_all.bash --min-cases' Output from 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash f983171d892eb60a4d3193f71125f280169a336f 32af4729f9ff1d374e03249b1b4d8d05fd8052d6' Output from c665567bd02143fd2060282ad5cb5dea6cdf2679 already saved Output from f983171d892eb60a4d3193f71125f280169a336f already saved Diffing: 'repo/run_scripts/run_bindiff_all.bash c665567bd02143fd2060282ad5cb5dea6cdf2679 f983171d892eb60a4d3193f71125f280169a336f' Found: 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 =============================== Test Results =============================== Commit Range Checked = ea5b5707470c2d942cbb7081436ede1baedde704...c665567bd02143fd2060282ad5cb5dea6cdf2679 New Unresolved Commits: 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): fa5559b6fd09f3da30b4d4d0255c532b3dd53607 ea5b5707470c2d942cbb7081436ede1baedde704 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 =============================== Updating Config File =============================== Saving into UnresolvedCommits: fa5559b6fd09f3da30b4d4d0255c532b3dd53607 ea5b5707470c2d942cbb7081436ede1baedde704 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 Saving into BaselineCommit: c665567bd02143fd2060282ad5cb5dea6cdf2679 =============================== Cleanup =============================== Removed repo. Removing all generated output REMOVING: ea5b5707470c2d942cbb7081436ede1baedde704 REMOVING: 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 REMOVING: f983171d892eb60a4d3193f71125f280169a336f REMOVING: c665567bd02143fd2060282ad5cb5dea6cdf2679 ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): fa5559b6fd09f3da30b4d4d0255c532b3dd53607 ea5b5707470c2d942cbb7081436ede1baedde704 32af4729f9ff1d374e03249b1b4d8d05fd8052d6 f983171d892eb60a4d3193f71125f280169a336f c665567bd02143fd2060282ad5cb5dea6cdf2679 Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE